Wall clock time and date at job start Wed Apr 15 2020 11:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46501 * 120.00211 * 2 1 4 4 C 1.50703 * 109.47069 * 269.99958 * 3 2 1 5 5 H 1.08006 * 120.00032 * 359.97438 * 4 3 2 6 6 C 1.37881 * 120.00295 * 180.02562 * 4 3 2 7 7 N 1.31512 * 119.99925 * 179.97438 * 6 4 3 8 8 Si 1.86794 * 119.99779 * 359.97438 * 6 4 3 9 9 H 1.48504 * 109.47115 * 90.00073 * 8 6 4 10 10 H 1.48495 * 109.47315 * 210.00226 * 8 6 4 11 11 H 1.48501 * 109.47190 * 330.00298 * 8 6 4 12 12 C 1.34782 * 120.00020 * 179.97438 * 2 1 3 13 13 O 1.21581 * 120.00076 * 179.97438 * 12 2 1 14 14 N 1.34776 * 120.00017 * 0.02562 * 12 2 1 15 15 C 1.39550 * 120.00093 * 184.63820 * 14 12 2 16 16 C 1.39347 * 120.82389 * 145.04137 * 15 14 12 17 17 C 1.38296 * 119.27773 * 180.02562 * 16 15 14 18 18 N 1.31609 * 120.99044 * 359.97438 * 17 16 15 19 19 C 1.32841 * 121.81230 * 359.72737 * 18 17 16 20 20 C 1.48085 * 119.69424 * 180.26846 * 19 18 17 21 21 O 1.21424 * 119.99372 * 180.26792 * 20 19 18 22 22 O 1.34671 * 120.00253 * 0.26560 * 20 19 18 23 23 C 1.39114 * 120.60599 * 0.53578 * 19 18 17 24 24 H 1.09003 * 109.47093 * 270.00353 * 1 2 3 25 25 H 1.08997 * 109.46898 * 29.99950 * 1 2 3 26 26 H 1.09000 * 109.47555 * 150.00331 * 1 2 3 27 27 H 1.08996 * 109.47429 * 29.99747 * 3 2 1 28 28 H 1.09005 * 109.47287 * 150.00208 * 3 2 1 29 29 H 0.97004 * 119.99467 * 179.97438 * 7 6 4 30 30 H 0.97010 * 119.99350 * 4.63930 * 14 12 2 31 31 H 1.08008 * 120.36022 * 359.97438 * 16 15 14 32 32 H 1.08000 * 119.50639 * 179.97438 * 17 16 15 33 33 H 0.96694 * 117.00189 * 179.97438 * 22 20 19 34 34 H 1.07995 * 120.51754 * 179.74966 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0981 1.0957 -2.2418 6 6 3.1270 2.8774 -1.6729 7 7 3.3466 3.2567 -2.9128 8 14 3.7340 3.9286 -0.2531 9 1 5.1071 3.5067 0.1235 10 1 3.7499 5.3552 -0.6650 11 1 2.8274 3.7596 0.9109 12 6 2.1389 -1.1672 0.0005 13 8 3.3547 -1.1673 0.0001 14 7 1.4650 -2.3344 0.0005 15 6 2.1593 -3.5410 0.0988 16 6 1.6183 -4.6216 0.7926 17 6 2.3343 -5.8023 0.8703 18 7 3.5145 -5.9179 0.2995 19 6 4.0664 -4.9165 -0.3767 20 6 5.3945 -5.1000 -1.0055 21 8 5.9062 -4.1868 -1.6208 22 8 6.0347 -6.2797 -0.8949 23 6 3.4107 -3.6954 -0.4950 24 1 -0.3633 0.0001 1.0277 25 1 -0.3633 0.8900 -0.5138 26 1 -0.3634 -0.8900 -0.5138 27 1 1.6085 2.0284 0.5138 28 1 3.1500 1.1384 0.5138 29 1 3.8235 4.0826 -3.0901 30 1 0.4973 -2.3357 -0.0678 31 1 0.6507 -4.5378 1.2652 32 1 1.9186 -6.6420 1.4075 33 1 6.8990 -6.3519 -1.3224 34 1 3.8625 -2.8809 -1.0417 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001593728179.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:29 Heat of formation + Delta-G solvation = -90.266627 kcal Electronic energy + Delta-G solvation = -21186.768974 eV Core-core repulsion = 17698.551461 eV Total energy + Delta-G solvation = -3488.217513 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.21983 -41.30943 -40.24152 -37.25344 -37.03562 -36.38619 -34.70768 -32.67040 -32.10157 -30.17098 -27.51603 -26.54744 -25.38437 -23.94736 -22.70540 -21.31459 -19.74274 -19.30167 -19.17077 -18.65913 -17.53569 -17.23887 -16.94799 -16.86868 -16.64976 -16.39179 -15.44955 -15.25846 -15.12384 -14.77272 -14.50200 -14.44787 -14.06207 -13.71397 -13.31660 -13.23757 -12.85458 -12.70738 -12.46094 -12.24272 -12.06666 -12.00396 -11.76622 -11.40695 -10.84279 -10.69052 -10.36303 -9.94959 -9.38149 -8.35039 -6.40671 -0.62578 0.07610 1.25864 1.31678 1.37883 1.43841 1.48367 1.81536 2.04866 2.30440 2.73604 2.87017 3.00521 3.30001 3.79466 3.84190 3.89266 4.22902 4.39303 4.42353 4.59171 4.69855 4.74947 4.85545 4.92589 4.97209 5.22437 5.38543 5.43166 5.47514 5.60231 5.84708 6.22653 6.61045 6.62059 6.86093 6.93174 7.20712 7.44464 8.82173 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.020083 B = 0.004703 C = 0.004022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.856088 B = 5952.468913 C = 6960.884627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.611 5.611 3 C 0.239 3.761 4 C -0.539 4.539 5 H 0.027 0.973 6 C 0.010 3.990 7 N -0.947 5.947 8 Si 0.949 3.051 9 H -0.281 1.281 10 H -0.275 1.275 11 H -0.231 1.231 12 C 0.691 3.309 13 O -0.616 6.616 14 N -0.666 5.666 15 C 0.194 3.806 16 C -0.141 4.141 17 C 0.121 3.879 18 N -0.463 5.463 19 C 0.085 3.915 20 C 0.543 3.457 21 O -0.541 6.541 22 O -0.483 6.483 23 C -0.134 4.134 24 H 0.088 0.912 25 H 0.073 0.927 26 H 0.085 0.915 27 H 0.062 0.938 28 H 0.019 0.981 29 H 0.268 0.732 30 H 0.430 0.570 31 H 0.198 0.802 32 H 0.220 0.780 33 H 0.432 0.568 34 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.317 -18.752 11.627 23.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.345 5.345 3 C 0.116 3.884 4 C -0.577 4.577 5 H 0.045 0.955 6 C -0.188 4.188 7 N -0.587 5.587 8 Si 0.771 3.229 9 H -0.207 1.207 10 H -0.200 1.200 11 H -0.153 1.153 12 C 0.392 3.608 13 O -0.496 6.496 14 N -0.319 5.319 15 C 0.089 3.911 16 C -0.163 4.163 17 C -0.039 4.039 18 N -0.176 5.176 19 C -0.050 4.050 20 C 0.386 3.614 21 O -0.431 6.431 22 O -0.295 6.295 23 C -0.158 4.158 24 H 0.106 0.894 25 H 0.092 0.908 26 H 0.104 0.896 27 H 0.080 0.920 28 H 0.037 0.963 29 H 0.077 0.923 30 H 0.273 0.727 31 H 0.215 0.785 32 H 0.237 0.763 33 H 0.294 0.706 34 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -8.188 -18.973 11.583 23.690 hybrid contribution 0.598 1.818 -0.887 2.109 sum -7.591 -17.156 10.696 21.595 Atomic orbital electron populations 1.22026 0.77074 1.04210 1.03513 1.47120 1.08319 1.04203 1.74901 1.19326 0.92688 0.81109 0.95251 1.21590 1.36939 1.06679 0.92521 0.95512 1.25875 0.95226 0.99055 0.98662 1.70058 1.42670 1.24508 1.21454 0.85706 0.79521 0.77684 0.79949 1.20675 1.20013 1.15342 1.16162 0.85061 0.81377 0.78182 1.90923 1.13948 1.86357 1.58323 1.42437 1.11142 1.01749 1.76528 1.17893 0.91821 0.86743 0.94644 1.22698 1.04432 0.91981 0.97226 1.23537 0.87969 0.97894 0.94541 1.67696 1.13121 1.29533 1.07298 1.19630 0.93485 0.90968 1.00905 1.20627 0.84777 0.79915 0.76052 1.90960 1.67415 1.43661 1.41026 1.84604 1.38313 1.34117 1.72485 1.22133 0.96799 0.97326 0.99571 0.89360 0.90768 0.89621 0.92036 0.96254 0.92288 0.72736 0.78498 0.76326 0.70593 0.86156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.79 10.24 127.77 1.31 3.10 16 2 N -0.61 -23.55 2.86 -869.32 -2.48 -26.04 16 3 C 0.24 11.35 4.23 85.63 0.36 11.71 16 4 C -0.54 -31.66 9.94 25.60 0.25 -31.41 16 5 H 0.03 1.77 8.06 -2.91 -0.02 1.74 16 6 C 0.01 0.58 5.47 84.66 0.46 1.04 16 7 N -0.95 -60.66 13.96 21.45 0.30 -60.36 16 8 Si 0.95 44.43 27.47 68.60 1.88 46.32 16 9 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 10 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 11 H -0.23 -9.41 6.54 99.48 0.65 -8.76 16 12 C 0.69 27.69 8.14 179.05 1.46 29.14 16 13 O -0.62 -31.73 13.41 -3.97 -0.05 -31.78 16 14 N -0.67 -18.10 5.22 -316.73 -1.65 -19.76 16 15 C 0.19 5.19 6.34 38.45 0.24 5.43 16 16 C -0.14 -2.13 10.06 22.55 0.23 -1.90 16 17 C 0.12 1.86 11.17 84.74 0.95 2.81 16 18 N -0.46 -11.48 10.12 -185.21 -1.87 -13.36 16 19 C 0.08 2.67 6.74 41.82 0.28 2.96 16 20 C 0.54 17.61 8.32 70.44 0.59 18.19 16 21 O -0.54 -21.91 17.11 20.08 0.34 -21.57 16 22 O -0.48 -11.18 13.24 -55.81 -0.74 -11.92 16 23 C -0.13 -4.77 8.29 22.75 0.19 -4.58 16 24 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 25 H 0.07 1.98 8.07 -2.39 -0.02 1.96 16 26 H 0.09 1.49 6.30 -2.39 -0.02 1.48 16 27 H 0.06 2.59 7.13 -2.39 -0.02 2.58 16 28 H 0.02 1.00 6.85 -2.38 -0.02 0.98 16 29 H 0.27 15.97 8.31 -92.71 -0.77 15.20 16 30 H 0.43 7.44 6.52 -92.70 -0.60 6.83 16 31 H 0.20 0.93 8.06 -2.91 -0.02 0.91 16 32 H 0.22 1.10 8.06 -2.91 -0.02 1.08 16 33 H 0.43 5.49 9.11 -74.06 -0.67 4.81 16 34 H 0.12 5.56 5.90 -2.91 -0.02 5.54 16 Total: -1.00 -92.41 303.59 1.88 -90.53 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -0.16 Total: 11.45 kcal Atomic # 6 Polarization: 30.17 SS G_CDS: 6.32 Total: 36.49 kcal Atomic # 7 Polarization: -113.80 SS G_CDS: -5.71 Total: -119.51 kcal Atomic # 8 Polarization: -64.82 SS G_CDS: -0.45 Total: -65.27 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 1.88 Total: 46.32 kcal Total: -92.41 1.88 -90.53 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001593728179.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.261 kcal (2) G-P(sol) polarization free energy of solvation -92.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds