Wall clock time and date at job start Wed Apr 15 2020 11:43:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46498 * 120.00049 * 2 1 4 4 C 1.50698 * 109.47334 * 270.00425 * 3 2 1 5 5 H 1.07993 * 120.00062 * 359.97438 * 4 3 2 6 6 C 1.37880 * 120.00007 * 179.97438 * 4 3 2 7 7 N 1.31514 * 119.99848 * 359.97438 * 6 4 3 8 8 Si 1.86791 * 119.99979 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.47376 * 90.00249 * 8 6 4 10 10 H 1.48503 * 109.47425 * 210.00307 * 8 6 4 11 11 H 1.48500 * 109.47532 * 330.00081 * 8 6 4 12 12 C 1.34776 * 120.00255 * 180.02562 * 2 1 3 13 13 O 1.21594 * 120.00261 * 183.99930 * 12 2 1 14 14 C 1.47442 * 119.99714 * 3.99015 * 12 2 1 15 15 C 1.39733 * 120.21126 * 307.57904 * 14 12 2 16 16 C 1.37746 * 119.92725 * 180.22794 * 15 14 12 17 17 C 1.38615 * 120.34948 * 359.47560 * 16 15 14 18 18 N 1.48014 * 119.78461 * 180.27376 * 17 16 15 19 19 O 1.21799 * 120.00551 * 359.97438 * 18 17 16 20 20 O 1.21804 * 119.99621 * 179.97438 * 18 17 16 21 21 C 1.37956 * 120.42270 * 0.25105 * 17 16 15 22 22 C 1.38947 * 120.06534 * 0.02562 * 21 17 16 23 23 N 1.38877 * 120.17740 * 179.97438 * 22 21 17 24 24 H 1.09000 * 109.47042 * 264.54735 * 1 2 3 25 25 H 1.08999 * 109.47090 * 24.55382 * 1 2 3 26 26 H 1.09004 * 109.46820 * 144.55311 * 1 2 3 27 27 H 1.09002 * 109.46553 * 30.00013 * 3 2 1 28 28 H 1.08997 * 109.47094 * 149.99617 * 3 2 1 29 29 H 0.96996 * 119.99742 * 179.97438 * 7 6 4 30 30 H 1.07996 * 120.03549 * 359.97438 * 15 14 12 31 31 H 1.08001 * 119.82338 * 179.74617 * 16 15 14 32 32 H 1.08000 * 119.96435 * 180.02562 * 21 17 16 33 33 H 0.97003 * 119.99791 * 354.83773 * 23 22 21 34 34 H 0.97003 * 120.00177 * 174.83554 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0981 1.0959 -2.2416 6 6 3.1260 2.8781 -1.6727 7 7 3.5524 3.6186 -0.6730 8 14 3.4378 3.4170 -3.4337 9 1 2.3077 4.2594 -3.9012 10 1 4.6978 4.2005 -3.4959 11 1 3.5560 2.2198 -4.3043 12 6 2.1390 -1.1672 -0.0005 13 8 3.3527 -1.1685 0.0729 14 6 1.4044 -2.4425 -0.0899 15 6 0.3595 -2.7157 0.7966 16 6 -0.3197 -3.9110 0.7108 17 6 0.0204 -4.8418 -0.2583 18 7 -0.7218 -6.1196 -0.3431 19 8 -1.6278 -6.3507 0.4375 20 8 -0.4264 -6.9401 -1.1934 21 6 1.0459 -4.5847 -1.1446 22 6 1.7464 -3.3870 -1.0701 23 7 2.7794 -3.1260 -1.9608 24 1 -0.3633 -0.0977 1.0230 25 1 -0.3633 0.9347 -0.4270 26 1 -0.3633 -0.8372 -0.5960 27 1 1.6084 2.0283 0.5139 28 1 3.1499 1.1384 0.5139 29 1 4.0292 4.4445 -0.8502 30 1 0.0874 -1.9922 1.5509 31 1 -1.1244 -4.1221 1.3996 32 1 1.3044 -5.3150 -1.8970 33 1 3.0634 -3.8093 -2.5879 34 1 3.2170 -2.2603 -1.9557 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001626878790.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:32 Heat of formation + Delta-G solvation = -9.191919 kcal Electronic energy + Delta-G solvation = -21341.611884 eV Core-core repulsion = 17856.910034 eV Total energy + Delta-G solvation = -3484.701850 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.23991 -40.39757 -38.27958 -36.64027 -35.45835 -34.66141 -32.94300 -31.91192 -29.29570 -28.15857 -27.02479 -25.85875 -23.59040 -23.02497 -22.10500 -19.43085 -19.38400 -18.79962 -17.59349 -17.19555 -16.99164 -16.69284 -16.11836 -15.69816 -14.76216 -14.67149 -14.32283 -14.14052 -13.81404 -13.53436 -12.71819 -12.66374 -12.30679 -12.09714 -11.83008 -11.61170 -11.37971 -11.25779 -11.24265 -11.21063 -11.05479 -10.74316 -10.32840 -9.84813 -9.61875 -9.31133 -8.59198 -8.01594 -7.88974 -6.20344 -4.26701 -0.31335 1.00521 1.26523 1.31290 2.88130 3.18909 3.25485 3.27176 3.33883 3.55681 3.69471 4.28983 4.30022 4.60354 4.63607 4.81572 4.92275 5.14329 5.26654 5.44471 5.52180 5.66254 5.70896 5.85025 5.98637 6.05355 6.35416 6.81344 7.10210 7.21378 7.29347 7.51857 7.58134 7.74225 8.03371 8.09638 8.60821 8.80060 9.39156 10.87707 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.030989 B = 0.004118 C = 0.003918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.332666 B = 6797.676929 C = 7145.297613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.587 5.587 3 C 0.243 3.757 4 C -0.534 4.534 5 H 0.057 0.943 6 C 0.064 3.936 7 N -0.891 5.891 8 Si 0.899 3.101 9 H -0.279 1.279 10 H -0.284 1.284 11 H -0.275 1.275 12 C 0.547 3.453 13 O -0.532 6.532 14 C -0.148 4.148 15 C -0.040 4.040 16 C -0.126 4.126 17 C 0.016 3.984 18 N 0.029 4.971 19 O -0.159 6.159 20 O -0.165 6.165 21 C -0.148 4.148 22 C 0.267 3.733 23 N -0.847 5.847 24 H 0.049 0.951 25 H 0.080 0.920 26 H 0.058 0.942 27 H 0.037 0.963 28 H 0.048 0.952 29 H 0.265 0.735 30 H 0.152 0.848 31 H 0.152 0.848 32 H 0.153 0.847 33 H 0.403 0.597 34 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.468 -12.601 0.624 14.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.317 5.317 3 C 0.124 3.876 4 C -0.572 4.572 5 H 0.075 0.925 6 C -0.139 4.139 7 N -0.529 5.529 8 Si 0.727 3.273 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.200 1.200 12 C 0.333 3.667 13 O -0.410 6.410 14 C -0.157 4.157 15 C -0.060 4.060 16 C -0.148 4.148 17 C -0.067 4.067 18 N 0.548 4.452 19 O -0.376 6.376 20 O -0.380 6.380 21 C -0.173 4.173 22 C 0.155 3.845 23 N -0.385 5.385 24 H 0.068 0.932 25 H 0.098 0.902 26 H 0.077 0.923 27 H 0.055 0.945 28 H 0.066 0.934 29 H 0.075 0.925 30 H 0.169 0.831 31 H 0.170 0.830 32 H 0.171 0.829 33 H 0.232 0.768 34 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -6.340 -11.730 0.733 13.354 hybrid contribution 0.183 0.121 -1.265 1.284 sum -6.157 -11.609 -0.532 13.151 Atomic orbital electron populations 1.21831 0.81045 1.03329 1.00464 1.48163 1.06503 1.07502 1.69561 1.19420 0.92769 0.77567 0.97830 1.21369 1.37198 1.06673 0.91992 0.92457 1.24932 0.95168 0.96272 0.97546 1.69921 1.37918 1.14253 1.30827 0.86480 0.77835 0.78657 0.84332 1.20521 1.20972 1.19961 1.17857 0.87180 0.83049 0.78608 1.90802 1.13049 1.86903 1.50270 1.20184 0.99923 0.97134 0.98496 1.21143 0.91845 0.95649 0.97392 1.20631 1.02628 0.92800 0.98747 1.20797 0.97946 0.85779 1.02227 1.43679 0.99951 1.02433 0.99140 1.94524 1.22122 1.83281 1.37636 1.94527 1.71340 1.41999 1.30178 1.20198 0.96932 0.98199 1.01955 1.17237 0.87770 0.90841 0.88640 1.42583 1.36913 1.20517 1.38441 0.93228 0.90168 0.92306 0.94527 0.93425 0.92502 0.83087 0.82990 0.82915 0.76751 0.74756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.10 9.13 59.85 0.55 1.65 16 2 N -0.59 -11.25 2.86 -184.23 -0.53 -11.78 16 3 C 0.24 5.87 5.17 -5.20 -0.03 5.84 16 4 C -0.53 -14.06 9.39 -34.44 -0.32 -14.38 16 5 H 0.06 1.50 7.81 -52.49 -0.41 1.09 16 6 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 7 N -0.89 -25.15 13.29 55.43 0.74 -24.41 16 8 Si 0.90 20.66 29.54 -169.99 -5.02 15.64 16 9 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 12 C 0.55 10.31 6.50 -12.51 -0.08 10.22 16 13 O -0.53 -12.01 15.42 5.28 0.08 -11.93 16 14 C -0.15 -2.16 4.77 -104.80 -0.50 -2.66 16 15 C -0.04 -0.47 7.91 -39.20 -0.31 -0.78 16 16 C -0.13 -1.38 9.53 -39.62 -0.38 -1.76 16 17 C 0.02 0.20 6.85 -79.91 -0.55 -0.35 16 18 N 0.03 0.39 4.45 33.98 0.15 0.54 16 19 O -0.16 -2.20 18.43 -29.46 -0.54 -2.74 16 20 O -0.17 -2.33 18.42 -29.46 -0.54 -2.87 16 21 C -0.15 -1.75 9.39 -39.42 -0.37 -2.12 16 22 C 0.27 3.53 6.75 -83.61 -0.56 2.97 16 23 N -0.85 -10.52 8.90 32.55 0.29 -10.23 16 24 H 0.05 0.57 7.19 -51.93 -0.37 0.19 16 25 H 0.08 1.18 8.03 -51.93 -0.42 0.77 16 26 H 0.06 0.74 6.46 -51.93 -0.34 0.40 16 27 H 0.04 0.90 8.07 -51.93 -0.42 0.48 16 28 H 0.05 1.30 7.37 -51.93 -0.38 0.92 16 29 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 30 H 0.15 1.46 6.66 -52.49 -0.35 1.11 16 31 H 0.15 1.37 7.59 -52.49 -0.40 0.97 16 32 H 0.15 1.53 7.59 -52.49 -0.40 1.13 16 33 H 0.40 3.63 8.84 -40.82 -0.36 3.27 16 34 H 0.42 6.30 6.93 -40.82 -0.28 6.01 16 LS Contribution 304.29 15.07 4.59 4.59 Total: -1.00 -31.01 304.29 -6.70 -37.71 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -3.26 Total: 5.25 kcal Atomic # 6 Polarization: 2.91 SS G_CDS: -2.65 Total: 0.26 kcal Atomic # 7 Polarization: -46.54 SS G_CDS: 0.65 Total: -45.89 kcal Atomic # 8 Polarization: -16.54 SS G_CDS: -1.00 Total: -17.54 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -31.01 -6.70 -37.71 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001626878790.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.515 kcal (2) G-P(sol) polarization free energy of solvation -31.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds