Wall clock time and date at job start Wed Apr 15 2020 11:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46498 * 120.00049 * 2 1 4 4 C 1.50698 * 109.47334 * 270.00425 * 3 2 1 5 5 H 1.07993 * 120.00062 * 359.97438 * 4 3 2 6 6 C 1.37880 * 120.00007 * 179.97438 * 4 3 2 7 7 N 1.31514 * 119.99848 * 359.97438 * 6 4 3 8 8 Si 1.86791 * 119.99979 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.47376 * 90.00249 * 8 6 4 10 10 H 1.48503 * 109.47425 * 210.00307 * 8 6 4 11 11 H 1.48500 * 109.47532 * 330.00081 * 8 6 4 12 12 C 1.34776 * 120.00255 * 180.02562 * 2 1 3 13 13 O 1.21594 * 120.00261 * 183.99930 * 12 2 1 14 14 C 1.47442 * 119.99714 * 3.99015 * 12 2 1 15 15 C 1.39733 * 120.21126 * 307.57904 * 14 12 2 16 16 C 1.37746 * 119.92725 * 180.22794 * 15 14 12 17 17 C 1.38615 * 120.34948 * 359.47560 * 16 15 14 18 18 N 1.48014 * 119.78461 * 180.27376 * 17 16 15 19 19 O 1.21799 * 120.00551 * 359.97438 * 18 17 16 20 20 O 1.21804 * 119.99621 * 179.97438 * 18 17 16 21 21 C 1.37956 * 120.42270 * 0.25105 * 17 16 15 22 22 C 1.38947 * 120.06534 * 0.02562 * 21 17 16 23 23 N 1.38877 * 120.17740 * 179.97438 * 22 21 17 24 24 H 1.09000 * 109.47042 * 264.54735 * 1 2 3 25 25 H 1.08999 * 109.47090 * 24.55382 * 1 2 3 26 26 H 1.09004 * 109.46820 * 144.55311 * 1 2 3 27 27 H 1.09002 * 109.46553 * 30.00013 * 3 2 1 28 28 H 1.08997 * 109.47094 * 149.99617 * 3 2 1 29 29 H 0.96996 * 119.99742 * 179.97438 * 7 6 4 30 30 H 1.07996 * 120.03549 * 359.97438 * 15 14 12 31 31 H 1.08001 * 119.82338 * 179.74617 * 16 15 14 32 32 H 1.08000 * 119.96435 * 180.02562 * 21 17 16 33 33 H 0.97003 * 119.99791 * 354.83773 * 23 22 21 34 34 H 0.97003 * 120.00177 * 174.83554 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0981 1.0959 -2.2416 6 6 3.1260 2.8781 -1.6727 7 7 3.5524 3.6186 -0.6730 8 14 3.4378 3.4170 -3.4337 9 1 2.3077 4.2594 -3.9012 10 1 4.6978 4.2005 -3.4959 11 1 3.5560 2.2198 -4.3043 12 6 2.1390 -1.1672 -0.0005 13 8 3.3527 -1.1685 0.0729 14 6 1.4044 -2.4425 -0.0899 15 6 0.3595 -2.7157 0.7966 16 6 -0.3197 -3.9110 0.7108 17 6 0.0204 -4.8418 -0.2583 18 7 -0.7218 -6.1196 -0.3431 19 8 -1.6278 -6.3507 0.4375 20 8 -0.4264 -6.9401 -1.1934 21 6 1.0459 -4.5847 -1.1446 22 6 1.7464 -3.3870 -1.0701 23 7 2.7794 -3.1260 -1.9608 24 1 -0.3633 -0.0977 1.0230 25 1 -0.3633 0.9347 -0.4270 26 1 -0.3633 -0.8372 -0.5960 27 1 1.6084 2.0283 0.5139 28 1 3.1499 1.1384 0.5139 29 1 4.0292 4.4445 -0.8502 30 1 0.0874 -1.9922 1.5509 31 1 -1.1244 -4.1221 1.3996 32 1 1.3044 -5.3150 -1.8970 33 1 3.0634 -3.8093 -2.5879 34 1 3.2170 -2.2603 -1.9557 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001626878790.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:31 Heat of formation + Delta-G solvation = -29.458974 kcal Electronic energy + Delta-G solvation = -21342.490729 eV Core-core repulsion = 17856.910034 eV Total energy + Delta-G solvation = -3485.580695 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.26642 -41.60048 -39.58104 -37.68513 -36.86626 -35.83751 -34.81537 -33.10415 -30.31545 -29.83139 -28.19471 -27.26903 -25.22395 -24.04252 -23.34029 -20.76125 -20.42314 -19.82893 -18.72573 -18.61322 -18.36038 -18.14284 -17.36737 -17.05154 -16.42760 -15.99706 -15.46459 -15.25376 -15.02943 -14.65697 -14.23836 -13.98472 -13.81625 -13.53181 -13.15611 -12.91890 -12.83270 -12.64627 -12.56481 -12.30297 -12.27472 -12.25602 -12.17713 -11.75121 -10.95130 -10.66633 -10.52874 -9.53865 -8.95888 -8.24894 -6.39664 -1.35294 0.06960 0.22504 0.30590 1.37120 1.38649 1.48125 1.58057 2.10062 2.36734 2.41458 2.58478 3.05936 3.36504 3.44150 3.68981 3.85267 3.93749 4.33944 4.38481 4.48126 4.65172 4.74421 4.89426 4.92266 4.99190 5.04114 5.20864 5.37366 5.49284 5.75792 6.01316 6.08299 6.50084 6.53170 6.63020 6.69783 7.15931 7.33906 8.82273 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.030989 B = 0.004118 C = 0.003918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.332666 B = 6797.676929 C = 7145.297613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.593 5.593 3 C 0.257 3.743 4 C -0.544 4.544 5 H 0.056 0.944 6 C 0.012 3.988 7 N -0.926 5.926 8 Si 0.965 3.035 9 H -0.267 1.267 10 H -0.283 1.283 11 H -0.270 1.270 12 C 0.547 3.453 13 O -0.581 6.581 14 C -0.168 4.168 15 C -0.026 4.026 16 C -0.114 4.114 17 C 0.012 3.988 18 N 0.029 4.971 19 O -0.158 6.158 20 O -0.181 6.181 21 C -0.139 4.139 22 C 0.262 3.738 23 N -0.847 5.847 24 H 0.084 0.916 25 H 0.072 0.928 26 H 0.081 0.919 27 H 0.029 0.971 28 H 0.005 0.995 29 H 0.267 0.733 30 H 0.174 0.826 31 H 0.178 0.822 32 H 0.170 0.830 33 H 0.417 0.583 34 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.207 -13.687 0.104 16.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.322 5.322 3 C 0.136 3.864 4 C -0.582 4.582 5 H 0.074 0.926 6 C -0.188 4.188 7 N -0.565 5.565 8 Si 0.790 3.210 9 H -0.192 1.192 10 H -0.209 1.209 11 H -0.195 1.195 12 C 0.335 3.665 13 O -0.463 6.463 14 C -0.177 4.177 15 C -0.046 4.046 16 C -0.135 4.135 17 C -0.071 4.071 18 N 0.547 4.453 19 O -0.376 6.376 20 O -0.393 6.393 21 C -0.163 4.163 22 C 0.149 3.851 23 N -0.384 5.384 24 H 0.103 0.897 25 H 0.091 0.909 26 H 0.099 0.901 27 H 0.047 0.953 28 H 0.023 0.977 29 H 0.076 0.924 30 H 0.191 0.809 31 H 0.196 0.804 32 H 0.187 0.813 33 H 0.249 0.751 34 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -8.122 -12.872 0.184 15.221 hybrid contribution 0.685 0.407 -1.044 1.313 sum -7.437 -12.465 -0.859 14.540 Atomic orbital electron populations 1.22115 0.77829 1.03927 1.03132 1.48102 1.08451 1.06077 1.69618 1.18880 0.91435 0.79756 0.96308 1.21657 1.36996 1.06695 0.92873 0.92615 1.25796 0.94909 0.96425 1.01644 1.70038 1.38766 1.14750 1.32982 0.85450 0.77909 0.78310 0.79351 1.19215 1.20875 1.19501 1.18418 0.86791 0.84154 0.77116 1.90766 1.15437 1.87780 1.52278 1.19890 1.01515 0.95424 1.00839 1.21309 0.90380 0.96227 0.96667 1.20863 1.02599 0.91730 0.98311 1.20979 0.97956 0.85464 1.02739 1.43824 0.99902 1.02679 0.98944 1.94518 1.22181 1.83401 1.37480 1.94534 1.71661 1.42535 1.30550 1.20271 0.96278 0.97705 1.02053 1.17318 0.88071 0.91066 0.88630 1.42583 1.36714 1.20320 1.38775 0.89722 0.90922 0.90087 0.95301 0.97650 0.92367 0.80879 0.80447 0.81288 0.75077 0.76241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.91 9.13 127.77 1.17 3.07 16 2 N -0.59 -22.72 2.86 -855.04 -2.44 -25.17 16 3 C 0.26 12.83 5.17 85.63 0.44 13.27 16 4 C -0.54 -29.16 9.39 25.60 0.24 -28.92 16 5 H 0.06 2.93 7.81 -2.91 -0.02 2.91 16 6 C 0.01 0.64 5.46 84.66 0.46 1.11 16 7 N -0.93 -53.41 13.29 21.45 0.28 -53.13 16 8 Si 0.97 42.47 29.54 68.60 2.03 44.50 16 9 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 10 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 11 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 12 C 0.55 20.67 6.50 86.67 0.56 21.23 16 13 O -0.58 -27.20 15.42 -4.01 -0.06 -27.26 16 14 C -0.17 -4.61 4.77 -19.98 -0.10 -4.71 16 15 C -0.03 -0.53 7.91 22.51 0.18 -0.35 16 16 C -0.11 -2.05 9.53 22.24 0.21 -1.84 16 17 C 0.01 0.26 6.85 36.40 0.25 0.51 16 18 N 0.03 0.70 4.45 -46.41 -0.21 0.50 16 19 O -0.16 -3.92 18.43 18.89 0.35 -3.57 16 20 O -0.18 -4.72 18.42 18.88 0.35 -4.37 16 21 C -0.14 -2.94 9.39 22.37 0.21 -2.73 16 22 C 0.26 6.52 6.75 38.71 0.26 6.78 16 23 N -0.85 -20.58 8.90 -50.95 -0.45 -21.03 16 24 H 0.08 1.66 7.19 -2.39 -0.02 1.64 16 25 H 0.07 2.05 8.03 -2.39 -0.02 2.03 16 26 H 0.08 1.80 6.46 -2.39 -0.02 1.78 16 27 H 0.03 1.46 8.07 -2.39 -0.02 1.44 16 28 H 0.01 0.31 7.37 -2.39 -0.02 0.29 16 29 H 0.27 14.53 8.31 -92.71 -0.77 13.76 16 30 H 0.17 2.65 6.66 -2.91 -0.02 2.63 16 31 H 0.18 2.35 7.59 -2.91 -0.02 2.33 16 32 H 0.17 2.97 7.59 -2.91 -0.02 2.95 16 33 H 0.42 7.13 8.84 -92.71 -0.82 6.32 16 34 H 0.41 12.43 6.93 -92.71 -0.64 11.79 16 Total: -1.00 -68.66 304.29 3.45 -65.21 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: -0.29 Total: 16.88 kcal Atomic # 6 Polarization: 3.54 SS G_CDS: 3.89 Total: 7.43 kcal Atomic # 7 Polarization: -96.01 SS G_CDS: -2.82 Total: -98.83 kcal Atomic # 8 Polarization: -35.83 SS G_CDS: 0.63 Total: -35.20 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.50 kcal Total: -68.66 3.45 -65.21 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001626878790.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.750 kcal (2) G-P(sol) polarization free energy of solvation -68.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds