Wall clock time and date at job start Wed Apr 15 2020 11:43:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35426 * 117.00519 * 2 1 4 4 N 1.32243 * 119.79609 * 0.02562 * 3 2 1 5 5 C 1.31872 * 121.79859 * 180.02562 * 4 3 2 6 6 C 1.38360 * 121.18952 * 359.97438 * 5 4 3 7 7 C 1.38328 * 119.45481 * 0.25624 * 6 5 4 8 8 C 1.39993 * 118.34897 * 359.50597 * 7 6 5 9 9 C 1.47527 * 120.59455 * 180.22249 * 8 7 6 10 10 O 1.21597 * 119.99974 * 180.27330 * 9 8 7 11 11 N 1.34775 * 120.00460 * 0.27321 * 9 8 7 12 12 C 1.46495 * 120.00317 * 180.02562 * 11 9 8 13 13 C 1.50694 * 109.47412 * 180.02562 * 12 11 9 14 14 O 1.21296 * 119.99798 * 359.97438 * 13 12 11 15 15 N 1.34777 * 120.00189 * 179.97438 * 13 12 11 16 16 C 1.37100 * 119.99896 * 179.97438 * 15 13 12 17 17 H 1.08000 * 120.00026 * 359.97438 * 16 15 13 18 18 C 1.38950 * 119.99884 * 180.02562 * 16 15 13 19 19 N 1.31416 * 120.00203 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00068 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47055 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47362 * 119.99586 * 20 18 16 23 23 H 1.48505 * 109.47215 * 239.99825 * 20 18 16 24 24 H 1.08993 * 109.46702 * 299.99795 * 1 2 3 25 25 H 1.08997 * 109.46749 * 59.99566 * 1 2 3 26 26 H 1.08994 * 109.47266 * 179.97438 * 1 2 3 27 27 H 1.08006 * 119.40379 * 180.02562 * 5 4 3 28 28 H 1.08002 * 120.27035 * 179.97438 * 6 5 4 29 29 H 1.08001 * 120.82512 * 179.74837 * 7 6 5 30 30 H 0.96996 * 119.99954 * 0.02562 * 11 9 8 31 31 H 1.09009 * 109.46910 * 299.99975 * 12 11 9 32 32 H 1.09004 * 109.47780 * 59.99444 * 12 11 9 33 33 H 0.97001 * 120.00103 * 359.97438 * 15 13 12 34 34 H 0.96995 * 120.00116 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0439 1.2066 0.0000 4 7 1.3199 2.3132 0.0005 5 6 1.8772 3.5083 0.0000 6 6 3.2528 3.6574 -0.0005 7 6 4.0588 2.5333 -0.0059 8 6 3.4450 1.2751 -0.0001 9 6 4.2570 0.0435 -0.0005 10 8 3.7125 -1.0438 -0.0005 11 7 5.6024 0.1232 -0.0011 12 6 6.4088 -1.0998 -0.0021 13 6 7.8714 -0.7373 -0.0018 14 8 8.2073 0.4282 -0.0014 15 7 8.8064 -1.7080 -0.0021 16 6 10.1371 -1.3781 -0.0024 17 1 10.4361 -0.3403 -0.0029 18 6 11.1010 -2.3789 -0.0033 19 7 10.7371 -3.6417 -0.0033 20 14 12.9141 -1.9294 -0.0044 21 1 13.0576 -0.4514 -0.0049 22 1 13.5638 -2.4899 1.2075 23 1 13.5622 -2.4896 -1.2175 24 1 -0.3632 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 1.2486 4.3866 0.0009 28 1 3.6935 4.6434 -0.0013 29 1 5.1350 2.6240 -0.0105 30 1 6.0368 0.9905 -0.0007 31 1 6.1801 -1.6865 0.8878 32 1 6.1794 -1.6857 -0.8922 33 1 8.5378 -2.6401 -0.0021 34 1 11.4100 -4.3403 -0.0042 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343551267.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:10 Heat of formation + Delta-G solvation = -69.066551 kcal Electronic energy + Delta-G solvation = -20691.612207 eV Core-core repulsion = 17204.313999 eV Total energy + Delta-G solvation = -3487.298208 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.99550 -39.18279 -38.03945 -37.95426 -34.47653 -33.75683 -32.74616 -31.38948 -31.01821 -27.97272 -27.19630 -24.98472 -24.05109 -22.98227 -20.52752 -19.67808 -18.66610 -18.15566 -17.55870 -17.20010 -16.20549 -15.70005 -15.39945 -15.15471 -15.04507 -14.63344 -14.28590 -14.18993 -13.93102 -13.67926 -13.35527 -13.09065 -12.75287 -12.19122 -11.94002 -11.87947 -11.64550 -11.36506 -11.15269 -10.41872 -10.33770 -10.19545 -10.14704 -9.66018 -9.61329 -8.87075 -8.65031 -8.62661 -8.11422 -6.52614 -3.94703 0.53294 1.05070 2.92792 2.95510 3.09512 3.21022 3.25521 3.32169 3.70125 3.76492 4.04998 4.11603 4.56952 4.66376 4.81583 4.87015 5.01313 5.16102 5.16158 5.18141 5.28065 5.48274 5.64500 5.84239 5.93050 5.96526 6.05999 6.11585 6.65898 7.07791 7.45131 7.52796 7.80272 7.90974 8.41905 8.46404 9.03342 9.38046 9.85574 10.64303 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.036769 B = 0.003254 C = 0.002996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.318342 B = 8601.435258 C = 9342.306332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.269 6.269 3 C 0.370 3.630 4 N -0.548 5.548 5 C 0.162 3.838 6 C -0.220 4.220 7 C -0.006 4.006 8 C -0.204 4.204 9 C 0.560 3.440 10 O -0.524 6.524 11 N -0.705 5.705 12 C 0.111 3.889 13 C 0.428 3.572 14 O -0.599 6.599 15 N -0.548 5.548 16 C -0.305 4.305 17 H 0.106 0.894 18 C 0.026 3.974 19 N -0.894 5.894 20 Si 0.933 3.067 21 H -0.267 1.267 22 H -0.280 1.280 23 H -0.280 1.280 24 H 0.058 0.942 25 H 0.058 0.942 26 H 0.098 0.902 27 H 0.164 0.836 28 H 0.144 0.856 29 H 0.150 0.850 30 H 0.408 0.592 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.396 0.604 34 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.663 10.600 -0.006 19.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.173 6.173 3 C 0.190 3.810 4 N -0.272 5.272 5 C 0.005 3.995 6 C -0.240 4.240 7 C -0.032 4.032 8 C -0.210 4.210 9 C 0.346 3.654 10 O -0.401 6.401 11 N -0.360 5.360 12 C -0.017 4.017 13 C 0.214 3.786 14 O -0.486 6.486 15 N -0.183 5.183 16 C -0.434 4.434 17 H 0.124 0.876 18 C -0.177 4.177 19 N -0.534 5.534 20 Si 0.759 3.241 21 H -0.191 1.191 22 H -0.206 1.206 23 H -0.206 1.206 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.116 0.884 27 H 0.181 0.819 28 H 0.162 0.838 29 H 0.168 0.832 30 H 0.246 0.754 31 H 0.103 0.897 32 H 0.103 0.897 33 H 0.230 0.770 34 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -17.481 9.990 -0.005 20.134 hybrid contribution 1.649 0.202 -0.003 1.662 sum -15.832 10.192 -0.008 18.829 Atomic orbital electron populations 1.22943 0.77699 1.03259 1.02145 1.86553 1.22170 1.22974 1.85629 1.19852 0.88107 0.85112 0.87942 1.67469 1.40338 0.98682 1.20753 1.22637 0.93086 0.93703 0.90082 1.21946 0.94675 1.00005 1.07413 1.21811 1.01223 0.90499 0.89699 1.20058 0.91560 0.95132 1.14222 1.17711 0.81869 0.88307 0.77541 1.90820 1.71764 1.28239 1.49312 1.45564 1.05142 1.10770 1.74522 1.20958 0.90229 0.87061 1.03441 1.19733 0.86630 0.86639 0.85606 1.90484 1.81707 1.18868 1.57516 1.41802 1.05878 1.08113 1.62501 1.19783 0.80399 0.95069 1.48185 0.87598 1.25334 1.00935 0.94687 0.96777 1.69623 1.35292 0.99181 1.49307 0.85756 0.81508 0.78976 0.77834 1.19122 1.20606 1.20611 0.92337 0.92344 0.88391 0.81934 0.83776 0.83244 0.75353 0.89668 0.89660 0.76992 0.91616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.38 101.05 1.05 1.41 16 2 O -0.27 -4.04 8.58 -39.74 -0.34 -4.38 16 3 C 0.37 5.30 7.51 -16.61 -0.12 5.17 16 4 N -0.55 -6.57 9.21 -12.98 -0.12 -6.69 16 5 C 0.16 1.45 11.17 -17.49 -0.20 1.25 16 6 C -0.22 -1.90 10.09 -39.50 -0.40 -2.30 16 7 C -0.01 -0.07 9.64 -38.89 -0.37 -0.45 16 8 C -0.20 -2.93 5.90 -104.69 -0.62 -3.55 16 9 C 0.56 9.66 7.77 -12.47 -0.10 9.56 16 10 O -0.52 -10.56 15.19 -16.49 -0.25 -10.81 16 11 N -0.70 -12.06 5.48 -62.53 -0.34 -12.40 16 12 C 0.11 2.06 6.15 -5.20 -0.03 2.03 16 13 C 0.43 9.76 7.85 -10.99 -0.09 9.67 16 14 O -0.60 -15.07 15.24 5.54 0.08 -14.98 16 15 N -0.55 -13.53 5.29 -10.96 -0.06 -13.59 16 16 C -0.30 -8.23 9.68 -14.93 -0.14 -8.38 16 17 H 0.11 2.98 7.16 -52.49 -0.38 2.60 16 18 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 19 N -0.89 -23.80 13.05 55.50 0.72 -23.07 16 20 Si 0.93 20.40 29.55 -169.99 -5.02 15.38 16 21 H -0.27 -5.82 7.11 56.52 0.40 -5.41 16 22 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 23 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 24 H 0.06 0.55 8.10 -51.93 -0.42 0.13 16 25 H 0.06 0.55 8.10 -51.93 -0.42 0.13 16 26 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 27 H 0.16 0.85 8.06 -52.48 -0.42 0.43 16 28 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 29 H 0.15 1.47 6.52 -52.49 -0.34 1.13 16 30 H 0.41 6.61 5.54 -40.82 -0.23 6.38 16 31 H 0.09 1.52 8.14 -51.92 -0.42 1.10 16 32 H 0.09 1.53 8.14 -51.93 -0.42 1.10 16 33 H 0.40 9.42 7.90 -40.82 -0.32 9.10 16 34 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 LS Contribution 306.72 15.07 4.62 4.62 Total: -1.00 -33.05 306.72 -5.18 -38.23 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: -3.36 Total: 12.70 kcal Atomic # 6 Polarization: 16.11 SS G_CDS: -1.12 Total: 14.99 kcal Atomic # 7 Polarization: -55.96 SS G_CDS: 0.20 Total: -55.75 kcal Atomic # 8 Polarization: -29.67 SS G_CDS: -0.51 Total: -30.17 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -33.05 -5.18 -38.23 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343551267.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.836 kcal (2) G-P(sol) polarization free energy of solvation -33.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds