Wall clock time and date at job start Wed Apr 15 2020 11:43:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35426 * 117.00519 * 2 1 4 4 N 1.32243 * 119.79609 * 0.02562 * 3 2 1 5 5 C 1.31872 * 121.79859 * 180.02562 * 4 3 2 6 6 C 1.38360 * 121.18952 * 359.97438 * 5 4 3 7 7 C 1.38328 * 119.45481 * 0.25624 * 6 5 4 8 8 C 1.39993 * 118.34897 * 359.50597 * 7 6 5 9 9 C 1.47527 * 120.59455 * 180.22249 * 8 7 6 10 10 O 1.21597 * 119.99974 * 180.27330 * 9 8 7 11 11 N 1.34775 * 120.00460 * 0.27321 * 9 8 7 12 12 C 1.46495 * 120.00317 * 180.02562 * 11 9 8 13 13 C 1.50694 * 109.47412 * 180.02562 * 12 11 9 14 14 O 1.21296 * 119.99798 * 359.97438 * 13 12 11 15 15 N 1.34777 * 120.00189 * 179.97438 * 13 12 11 16 16 C 1.37100 * 119.99896 * 179.97438 * 15 13 12 17 17 H 1.08000 * 120.00026 * 359.97438 * 16 15 13 18 18 C 1.38950 * 119.99884 * 180.02562 * 16 15 13 19 19 N 1.31416 * 120.00203 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00068 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47055 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47362 * 119.99586 * 20 18 16 23 23 H 1.48505 * 109.47215 * 239.99825 * 20 18 16 24 24 H 1.08993 * 109.46702 * 299.99795 * 1 2 3 25 25 H 1.08997 * 109.46749 * 59.99566 * 1 2 3 26 26 H 1.08994 * 109.47266 * 179.97438 * 1 2 3 27 27 H 1.08006 * 119.40379 * 180.02562 * 5 4 3 28 28 H 1.08002 * 120.27035 * 179.97438 * 6 5 4 29 29 H 1.08001 * 120.82512 * 179.74837 * 7 6 5 30 30 H 0.96996 * 119.99954 * 0.02562 * 11 9 8 31 31 H 1.09009 * 109.46910 * 299.99975 * 12 11 9 32 32 H 1.09004 * 109.47780 * 59.99444 * 12 11 9 33 33 H 0.97001 * 120.00103 * 359.97438 * 15 13 12 34 34 H 0.96995 * 120.00116 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0439 1.2066 0.0000 4 7 1.3199 2.3132 0.0005 5 6 1.8772 3.5083 0.0000 6 6 3.2528 3.6574 -0.0005 7 6 4.0588 2.5333 -0.0059 8 6 3.4450 1.2751 -0.0001 9 6 4.2570 0.0435 -0.0005 10 8 3.7125 -1.0438 -0.0005 11 7 5.6024 0.1232 -0.0011 12 6 6.4088 -1.0998 -0.0021 13 6 7.8714 -0.7373 -0.0018 14 8 8.2073 0.4282 -0.0014 15 7 8.8064 -1.7080 -0.0021 16 6 10.1371 -1.3781 -0.0024 17 1 10.4361 -0.3403 -0.0029 18 6 11.1010 -2.3789 -0.0033 19 7 10.7371 -3.6417 -0.0033 20 14 12.9141 -1.9294 -0.0044 21 1 13.0576 -0.4514 -0.0049 22 1 13.5638 -2.4899 1.2075 23 1 13.5622 -2.4896 -1.2175 24 1 -0.3632 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 1.2486 4.3866 0.0009 28 1 3.6935 4.6434 -0.0013 29 1 5.1350 2.6240 -0.0105 30 1 6.0368 0.9905 -0.0007 31 1 6.1801 -1.6865 0.8878 32 1 6.1794 -1.6857 -0.8922 33 1 8.5378 -2.6401 -0.0021 34 1 11.4100 -4.3403 -0.0042 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343551267.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:10 Heat of formation + Delta-G solvation = -95.099943 kcal Electronic energy + Delta-G solvation = -20692.741100 eV Core-core repulsion = 17204.313999 eV Total energy + Delta-G solvation = -3488.427101 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.97143 -40.66919 -39.66665 -38.91041 -36.26037 -35.37233 -33.75677 -33.33907 -31.89325 -29.43813 -28.13821 -26.63887 -25.26071 -23.88119 -21.81767 -21.41186 -20.15446 -19.57124 -18.88640 -18.15859 -17.37281 -17.19288 -16.70902 -16.62433 -16.46689 -15.92977 -15.81144 -15.42191 -15.27500 -15.02323 -14.35637 -14.30058 -13.82011 -13.57707 -13.56827 -13.53921 -12.91332 -12.70022 -12.44320 -12.19880 -12.10362 -11.57961 -11.29405 -11.06459 -10.71580 -10.55632 -10.25779 -10.09151 -9.56668 -8.51102 -6.01402 -0.37831 0.21188 1.35365 1.43506 1.57549 1.79435 1.90817 1.91791 2.08510 2.31126 2.77778 3.09322 3.16176 3.26284 3.67396 3.78210 3.96832 4.16949 4.25368 4.39418 4.41168 4.41331 4.41847 4.51621 4.72279 4.87946 5.08556 5.21273 5.38734 5.39997 5.91551 6.19363 6.42459 6.48912 6.71744 7.03012 7.11228 7.43627 7.93110 8.66071 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.036769 B = 0.003254 C = 0.002996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.318342 B = 8601.435258 C = 9342.306332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.302 6.302 3 C 0.353 3.647 4 N -0.556 5.556 5 C 0.169 3.831 6 C -0.205 4.205 7 C -0.008 4.008 8 C -0.235 4.235 9 C 0.561 3.439 10 O -0.561 6.561 11 N -0.703 5.703 12 C 0.122 3.878 13 C 0.434 3.566 14 O -0.622 6.622 15 N -0.559 5.559 16 C -0.336 4.336 17 H 0.088 0.912 18 C -0.011 4.011 19 N -0.917 5.917 20 Si 0.998 3.002 21 H -0.268 1.268 22 H -0.272 1.272 23 H -0.272 1.272 24 H 0.064 0.936 25 H 0.064 0.936 26 H 0.112 0.888 27 H 0.208 0.792 28 H 0.184 0.816 29 H 0.158 0.842 30 H 0.413 0.587 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.399 0.601 34 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.015 12.591 -0.007 21.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.207 6.207 3 C 0.173 3.827 4 N -0.281 5.281 5 C 0.012 3.988 6 C -0.224 4.224 7 C -0.034 4.034 8 C -0.242 4.242 9 C 0.349 3.651 10 O -0.441 6.441 11 N -0.358 5.358 12 C -0.005 4.005 13 C 0.221 3.779 14 O -0.510 6.510 15 N -0.194 5.194 16 C -0.465 4.465 17 H 0.106 0.894 18 C -0.212 4.212 19 N -0.557 5.557 20 Si 0.821 3.179 21 H -0.193 1.193 22 H -0.197 1.197 23 H -0.197 1.197 24 H 0.083 0.917 25 H 0.083 0.917 26 H 0.131 0.869 27 H 0.224 0.776 28 H 0.202 0.798 29 H 0.176 0.824 30 H 0.252 0.748 31 H 0.112 0.888 32 H 0.112 0.888 33 H 0.233 0.767 34 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -17.851 11.987 -0.006 21.502 hybrid contribution 1.644 -0.286 -0.002 1.668 sum -16.207 11.702 -0.008 19.990 Atomic orbital electron populations 1.23134 0.75905 1.04485 1.02710 1.86498 1.24225 1.24115 1.85875 1.20010 0.88236 0.85648 0.88775 1.67567 1.40309 0.99053 1.21154 1.23490 0.94067 0.93856 0.87352 1.22387 0.94369 1.00763 1.04914 1.22024 1.02010 0.90107 0.89237 1.19939 0.91582 0.94933 1.17704 1.18168 0.81607 0.89052 0.76270 1.90785 1.72277 1.29896 1.51139 1.45526 1.05232 1.10313 1.74757 1.20783 0.87456 0.87999 1.04304 1.20334 0.87959 0.85948 0.83644 1.90458 1.82635 1.19856 1.58048 1.41849 1.05691 1.08535 1.63334 1.19797 0.81828 0.94649 1.50275 0.89386 1.26149 1.04822 0.94449 0.95769 1.69690 1.36776 0.99881 1.49334 0.84798 0.76314 0.78533 0.78255 1.19257 1.19694 1.19702 0.91704 0.91710 0.86949 0.77577 0.79844 0.82419 0.74800 0.88782 0.88768 0.76722 0.91078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.66 10.38 113.37 1.18 1.83 16 2 O -0.30 -9.24 8.58 -66.40 -0.57 -9.81 16 3 C 0.35 9.99 7.51 85.13 0.64 10.63 16 4 N -0.56 -12.30 9.21 -308.00 -2.84 -15.14 16 5 C 0.17 2.41 11.17 84.72 0.95 3.35 16 6 C -0.20 -2.78 10.09 22.32 0.23 -2.55 16 7 C -0.01 -0.16 9.64 22.72 0.22 0.06 16 8 C -0.24 -6.73 5.90 -19.91 -0.12 -6.85 16 9 C 0.56 19.69 7.77 86.69 0.67 20.36 16 10 O -0.56 -23.29 15.19 16.79 0.26 -23.03 16 11 N -0.70 -24.21 5.48 -470.01 -2.58 -26.78 16 12 C 0.12 4.60 6.15 85.63 0.53 5.12 16 13 C 0.43 20.03 7.85 87.65 0.69 20.72 16 14 O -0.62 -31.61 15.24 -3.08 -0.05 -31.65 16 15 N -0.56 -28.06 5.29 -306.98 -1.62 -29.69 16 16 C -0.34 -18.43 9.68 84.04 0.81 -17.62 16 17 H 0.09 5.06 7.16 -2.91 -0.02 5.04 16 18 C -0.01 -0.59 5.50 84.93 0.47 -0.12 16 19 N -0.92 -48.74 13.05 21.66 0.28 -48.45 16 20 Si 1.00 41.51 29.55 68.60 2.03 43.54 16 21 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 22 H -0.27 -10.88 7.11 99.48 0.71 -10.18 16 23 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 24 H 0.06 1.19 8.10 -2.39 -0.02 1.17 16 25 H 0.06 1.19 8.10 -2.39 -0.02 1.17 16 26 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 27 H 0.21 1.05 8.06 -2.91 -0.02 1.03 16 28 H 0.18 1.06 8.06 -2.91 -0.02 1.04 16 29 H 0.16 2.86 6.52 -2.91 -0.02 2.84 16 30 H 0.41 13.35 5.54 -92.71 -0.51 12.84 16 31 H 0.09 3.40 8.14 -2.38 -0.02 3.38 16 32 H 0.09 3.40 8.14 -2.38 -0.02 3.38 16 33 H 0.40 19.33 7.90 -92.71 -0.73 18.60 16 34 H 0.28 13.87 8.31 -92.71 -0.77 13.10 16 Total: -1.00 -72.51 306.72 1.09 -71.42 By element: Atomic # 1 Polarization: 34.74 SS G_CDS: -0.08 Total: 34.66 kcal Atomic # 6 Polarization: 28.67 SS G_CDS: 6.26 Total: 34.93 kcal Atomic # 7 Polarization: -113.31 SS G_CDS: -6.75 Total: -120.06 kcal Atomic # 8 Polarization: -64.13 SS G_CDS: -0.36 Total: -64.49 kcal Atomic # 14 Polarization: 41.51 SS G_CDS: 2.03 Total: 43.54 kcal Total: -72.51 1.09 -71.42 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343551267.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.684 kcal (2) G-P(sol) polarization free energy of solvation -72.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds