Wall clock time and date at job start Wed Apr 15 2020 11:43:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35728 * 116.99917 * 2 1 4 4 C 1.41859 * 126.78823 * 180.02562 * 3 2 1 5 5 C 1.36663 * 103.81330 * 179.74009 * 4 3 2 6 6 C 1.47536 * 126.87858 * 180.26157 * 5 4 3 7 7 O 1.21577 * 120.00241 * 354.06544 * 6 5 4 8 8 N 1.34774 * 119.99998 * 174.06395 * 6 5 4 9 9 C 1.46504 * 120.00237 * 4.33313 * 8 6 5 10 10 C 1.50697 * 109.47238 * 83.57408 * 9 8 6 11 11 H 1.07994 * 120.00025 * 0.02562 * 10 9 8 12 12 C 1.37880 * 119.99567 * 180.02562 * 10 9 8 13 13 N 1.31515 * 120.00249 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 119.99790 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.47047 * 59.99839 * 14 12 10 16 16 H 1.48496 * 109.47183 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.47012 * 300.00290 * 14 12 10 18 18 C 1.46499 * 120.00163 * 184.32580 * 8 6 5 19 19 C 1.53001 * 109.47247 * 94.91052 * 18 8 6 20 20 C 1.47196 * 109.47112 * 180.02562 * 19 18 8 21 21 N 9.10818 * 162.15682 * 137.04059 * 3 1 2 22 22 O 1.34661 * 106.23819 * 0.25196 * 5 4 3 23 23 N 1.20874 * 111.63624 * 0.02562 * 22 5 4 24 24 H 1.09003 * 109.46779 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47267 * 300.00548 * 1 2 3 26 26 H 1.09007 * 109.46751 * 60.00439 * 1 2 3 27 27 H 1.08001 * 128.08710 * 359.97438 * 4 3 2 28 28 H 1.08997 * 109.47417 * 203.58208 * 9 8 6 29 29 H 1.09003 * 109.46587 * 323.57248 * 9 8 6 30 30 H 0.96996 * 119.99949 * 180.02562 * 13 12 10 31 31 H 1.09006 * 109.47492 * 214.91084 * 18 8 6 32 32 H 1.08998 * 109.47007 * 334.90719 * 18 8 6 33 33 H 1.09000 * 109.47138 * 300.00014 * 19 18 8 34 34 H 1.09003 * 109.46740 * 60.00166 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 3.4432 1.4505 -0.0005 5 6 3.5391 2.8138 -0.0063 6 6 4.7784 3.6142 -0.0146 7 8 5.8577 3.0647 0.0919 8 7 4.7142 4.9545 -0.1404 9 6 3.4124 5.6256 -0.1733 10 6 2.9264 5.8486 1.2357 11 1 3.5273 5.5234 2.0720 12 6 1.7145 6.4679 1.4570 13 7 0.9825 6.8635 0.4385 14 14 1.1124 6.7450 3.2034 15 1 2.0877 7.5934 3.9345 16 1 -0.2072 7.4252 3.1700 17 1 0.9786 5.4373 3.8942 18 6 5.9462 5.7404 -0.2440 19 6 6.2747 5.9817 -1.7187 20 6 7.5129 6.7709 -1.8228 21 7 8.4686 7.3804 -1.9019 22 8 2.2758 3.2802 -0.0031 23 7 1.4686 2.3805 0.0042 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 4.2442 0.7261 -0.0006 28 1 3.5112 6.5857 -0.6798 29 1 2.6964 5.0035 -0.7104 30 1 0.1302 7.2995 0.5942 31 1 5.8100 6.6977 0.2593 32 1 6.7651 5.1960 0.2263 33 1 6.4109 5.0245 -2.2220 34 1 5.4558 6.5262 -2.1889 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346764851.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:13 Heat of formation + Delta-G solvation = 30.889489 kcal Electronic energy + Delta-G solvation = -21608.349419 eV Core-core repulsion = 18125.385629 eV Total energy + Delta-G solvation = -3482.963789 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -44.46387 -39.42188 -38.60935 -36.76985 -35.49384 -32.96289 -32.74724 -31.88590 -30.60095 -27.54353 -27.31052 -25.03355 -23.36340 -22.88066 -21.99915 -19.95943 -17.85221 -17.53950 -17.28504 -16.57796 -16.39178 -15.89147 -15.67943 -15.29527 -14.80945 -14.66508 -14.38251 -14.28752 -13.61544 -13.27485 -12.98084 -12.54705 -12.35604 -12.26287 -12.12287 -11.79156 -11.71488 -11.39109 -11.09366 -11.00439 -10.81298 -10.72355 -10.23341 -9.94571 -9.76755 -9.44541 -8.97358 -8.56668 -8.11793 -6.20695 -4.27207 1.25118 2.48061 2.75643 2.89025 2.93285 3.09424 3.24669 3.29594 3.32646 3.45646 3.74967 4.26600 4.32925 4.50023 5.02230 5.11631 5.15682 5.20159 5.20585 5.22003 5.29399 5.52916 5.56549 5.59004 5.90214 5.98199 6.13323 6.39755 7.06371 7.17582 7.21288 7.64756 7.69673 7.85447 7.96157 8.33875 8.63599 8.77906 9.40341 10.86948 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.011514 B = 0.007160 C = 0.004794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2431.265107 B = 3909.698654 C = 5839.002139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.287 6.287 3 C 0.182 3.818 4 C -0.177 4.177 5 C -0.038 4.038 6 C 0.603 3.397 7 O -0.540 6.540 8 N -0.578 5.578 9 C 0.227 3.773 10 C -0.541 4.541 11 H 0.061 0.939 12 C 0.075 3.925 13 N -0.884 5.884 14 Si 0.893 3.107 15 H -0.276 1.276 16 H -0.286 1.286 17 H -0.276 1.276 18 C 0.123 3.877 19 C -0.046 4.046 20 C 0.220 3.780 21 N -0.447 5.447 22 O 0.176 5.824 23 N -0.394 5.394 24 H 0.101 0.899 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.182 0.818 28 H 0.048 0.952 29 H 0.054 0.946 30 H 0.266 0.734 31 H 0.095 0.905 32 H 0.090 0.910 33 H 0.110 0.890 34 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.622 -8.146 -3.335 8.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.195 6.195 3 C -0.013 4.013 4 C -0.200 4.200 5 C -0.105 4.105 6 C 0.389 3.611 7 O -0.420 6.420 8 N -0.308 5.308 9 C 0.108 3.892 10 C -0.580 4.580 11 H 0.079 0.921 12 C -0.129 4.129 13 N -0.521 5.521 14 Si 0.720 3.280 15 H -0.201 1.201 16 H -0.211 1.211 17 H -0.202 1.202 18 C -0.002 4.002 19 C -0.087 4.087 20 C -0.098 4.098 21 N -0.124 5.124 22 O 0.106 5.894 23 N -0.112 5.112 24 H 0.119 0.881 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.199 0.801 28 H 0.066 0.934 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.113 0.887 32 H 0.109 0.891 33 H 0.128 0.872 34 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 1.224 -7.310 -3.447 8.174 hybrid contribution -0.653 -0.409 1.058 1.309 sum 0.571 -7.719 -2.389 8.100 Atomic orbital electron populations 1.23015 0.77210 1.03526 1.02521 1.86141 1.22273 1.21024 1.90028 1.21861 0.90576 0.85844 1.03067 1.21975 0.94163 0.94837 1.09020 1.23890 0.87890 0.93015 1.05744 1.16576 0.84907 0.82171 0.77483 1.90789 1.27098 1.71736 1.52371 1.48180 1.09618 1.04848 1.68112 1.19849 0.76884 0.93792 0.98628 1.21286 1.04652 1.40350 0.91696 0.92116 1.24814 0.96133 0.94893 0.97102 1.69879 1.12923 1.39132 1.30174 0.86638 0.78085 0.78547 0.84712 1.20114 1.21105 1.20192 1.21256 0.87928 0.97809 0.93188 1.19765 0.89050 0.99159 1.00766 1.29036 0.94345 0.93318 0.93057 1.81208 1.12006 1.10507 1.08717 1.85550 1.11154 1.27211 1.65534 1.74061 1.17601 0.96588 1.22937 0.88068 0.92268 0.92299 0.80051 0.93369 0.92895 0.92411 0.88717 0.89148 0.87219 0.86603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.73 101.05 1.08 1.46 16 2 O -0.29 -4.33 10.57 -18.89 -0.20 -4.53 16 3 C 0.18 3.16 8.00 -16.72 -0.13 3.02 16 4 C -0.18 -2.92 10.97 -38.77 -0.43 -3.35 16 5 C -0.04 -0.71 6.87 -36.36 -0.25 -0.96 16 6 C 0.60 11.02 7.61 -12.47 -0.09 10.92 16 7 O -0.54 -10.27 16.40 5.30 0.09 -10.18 16 8 N -0.58 -10.11 2.47 -176.29 -0.44 -10.55 16 9 C 0.23 4.70 4.79 -5.19 -0.02 4.68 16 10 C -0.54 -12.98 8.55 -34.44 -0.29 -13.28 16 11 H 0.06 1.49 7.81 -52.49 -0.41 1.08 16 12 C 0.07 1.88 5.46 -17.82 -0.10 1.78 16 13 N -0.88 -23.06 13.29 55.43 0.74 -22.32 16 14 Si 0.89 20.10 29.54 -169.99 -5.02 15.08 16 15 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 16 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 17 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 18 C 0.12 1.74 5.42 -4.04 -0.02 1.71 16 19 C -0.05 -0.52 6.02 -29.52 -0.18 -0.70 16 20 C 0.22 2.87 15.43 -20.75 -0.32 2.55 16 21 N -0.45 -6.96 18.54 42.17 0.78 -6.18 16 22 O 0.18 3.61 7.37 15.50 0.11 3.72 16 23 N -0.39 -7.72 11.50 30.47 0.35 -7.37 16 24 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.06 0.68 8.14 -51.92 -0.42 0.26 16 27 H 0.18 2.53 8.06 -52.49 -0.42 2.10 16 28 H 0.05 1.00 8.02 -51.93 -0.42 0.58 16 29 H 0.05 1.17 5.39 -51.93 -0.28 0.89 16 30 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 31 H 0.09 1.32 8.11 -51.93 -0.42 0.90 16 32 H 0.09 1.28 7.23 -51.93 -0.38 0.91 16 33 H 0.11 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.12 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 314.50 15.07 4.74 4.74 Total: -1.00 -28.96 314.50 -3.18 -32.14 By element: Atomic # 1 Polarization: 1.18 SS G_CDS: -3.57 Total: -2.40 kcal Atomic # 6 Polarization: 8.61 SS G_CDS: -0.76 Total: 7.85 kcal Atomic # 7 Polarization: -47.85 SS G_CDS: 1.43 Total: -46.42 kcal Atomic # 8 Polarization: -10.99 SS G_CDS: 0.00 Total: -10.99 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -28.96 -3.18 -32.14 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346764851.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.029 kcal (2) G-P(sol) polarization free energy of solvation -28.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds