Wall clock time and date at job start Wed Apr 15 2020 11:43:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35728 * 116.99917 * 2 1 4 4 C 1.41859 * 126.78823 * 180.02562 * 3 2 1 5 5 C 1.36663 * 103.81330 * 179.74009 * 4 3 2 6 6 C 1.47536 * 126.87858 * 180.26157 * 5 4 3 7 7 O 1.21577 * 120.00241 * 354.06544 * 6 5 4 8 8 N 1.34774 * 119.99998 * 174.06395 * 6 5 4 9 9 C 1.46504 * 120.00237 * 4.33313 * 8 6 5 10 10 C 1.50697 * 109.47238 * 83.57408 * 9 8 6 11 11 H 1.07994 * 120.00025 * 0.02562 * 10 9 8 12 12 C 1.37880 * 119.99567 * 180.02562 * 10 9 8 13 13 N 1.31515 * 120.00249 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 119.99790 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.47047 * 59.99839 * 14 12 10 16 16 H 1.48496 * 109.47183 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.47012 * 300.00290 * 14 12 10 18 18 C 1.46499 * 120.00163 * 184.32580 * 8 6 5 19 19 C 1.53001 * 109.47247 * 94.91052 * 18 8 6 20 20 C 1.47196 * 109.47112 * 180.02562 * 19 18 8 21 21 N 9.10818 * 162.15682 * 137.04059 * 3 1 2 22 22 O 1.34661 * 106.23819 * 0.25196 * 5 4 3 23 23 N 1.20874 * 111.63624 * 0.02562 * 22 5 4 24 24 H 1.09003 * 109.46779 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47267 * 300.00548 * 1 2 3 26 26 H 1.09007 * 109.46751 * 60.00439 * 1 2 3 27 27 H 1.08001 * 128.08710 * 359.97438 * 4 3 2 28 28 H 1.08997 * 109.47417 * 203.58208 * 9 8 6 29 29 H 1.09003 * 109.46587 * 323.57248 * 9 8 6 30 30 H 0.96996 * 119.99949 * 180.02562 * 13 12 10 31 31 H 1.09006 * 109.47492 * 214.91084 * 18 8 6 32 32 H 1.08998 * 109.47007 * 334.90719 * 18 8 6 33 33 H 1.09000 * 109.47138 * 300.00014 * 19 18 8 34 34 H 1.09003 * 109.46740 * 60.00166 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 3.4432 1.4505 -0.0005 5 6 3.5391 2.8138 -0.0063 6 6 4.7784 3.6142 -0.0146 7 8 5.8577 3.0647 0.0919 8 7 4.7142 4.9545 -0.1404 9 6 3.4124 5.6256 -0.1733 10 6 2.9264 5.8486 1.2357 11 1 3.5273 5.5234 2.0720 12 6 1.7145 6.4679 1.4570 13 7 0.9825 6.8635 0.4385 14 14 1.1124 6.7450 3.2034 15 1 2.0877 7.5934 3.9345 16 1 -0.2072 7.4252 3.1700 17 1 0.9786 5.4373 3.8942 18 6 5.9462 5.7404 -0.2440 19 6 6.2747 5.9817 -1.7187 20 6 7.5129 6.7709 -1.8228 21 7 8.4686 7.3804 -1.9019 22 8 2.2758 3.2802 -0.0031 23 7 1.4686 2.3805 0.0042 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 4.2442 0.7261 -0.0006 28 1 3.5112 6.5857 -0.6798 29 1 2.6964 5.0035 -0.7104 30 1 0.1302 7.2995 0.5942 31 1 5.8100 6.6977 0.2593 32 1 6.7651 5.1960 0.2263 33 1 6.4109 5.0245 -2.2220 34 1 5.4558 6.5262 -2.1889 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346764851.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:13 Heat of formation + Delta-G solvation = 11.594341 kcal Electronic energy + Delta-G solvation = -21609.186119 eV Core-core repulsion = 18125.385629 eV Total energy + Delta-G solvation = -3483.800490 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -45.85932 -40.83618 -39.79820 -37.94174 -36.90993 -34.67763 -34.09221 -33.28920 -31.91227 -29.06904 -28.52445 -26.28414 -25.07614 -24.23373 -23.33718 -21.28005 -19.24957 -18.94119 -18.50601 -18.20733 -17.78032 -17.26572 -17.02236 -16.47643 -16.29440 -15.91291 -15.76889 -15.58307 -14.90757 -14.56698 -14.35395 -14.21766 -13.62007 -13.50563 -13.25938 -13.06758 -12.92275 -12.82362 -12.70629 -12.50256 -12.35529 -12.10632 -11.76773 -11.66620 -11.27999 -10.81732 -10.49644 -10.28870 -9.61802 -8.11397 -6.20529 -0.15962 1.13373 1.44359 1.47080 1.51248 1.59068 1.72572 1.79774 1.84463 2.07132 2.37926 2.51474 3.13939 3.22397 3.24385 3.69001 3.85000 4.13760 4.18456 4.20403 4.27888 4.37895 4.60387 4.62421 4.73282 4.86317 4.92307 5.07984 5.39526 5.65022 5.82585 5.93770 6.14117 6.32147 6.60666 6.80449 6.99870 7.22536 7.48717 8.94839 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.011514 B = 0.007160 C = 0.004794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2431.265107 B = 3909.698654 C = 5839.002139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.288 6.288 3 C 0.189 3.811 4 C -0.163 4.163 5 C -0.056 4.056 6 C 0.605 3.395 7 O -0.548 6.548 8 N -0.575 5.575 9 C 0.241 3.759 10 C -0.540 4.540 11 H 0.051 0.949 12 C 0.035 3.965 13 N -0.909 5.909 14 Si 0.935 3.065 15 H -0.270 1.270 16 H -0.285 1.285 17 H -0.283 1.283 18 C 0.119 3.881 19 C -0.033 4.033 20 C 0.247 3.753 21 N -0.491 5.491 22 O 0.145 5.855 23 N -0.417 5.417 24 H 0.142 0.858 25 H 0.051 0.949 26 H 0.057 0.943 27 H 0.209 0.791 28 H 0.051 0.949 29 H 0.043 0.957 30 H 0.265 0.735 31 H 0.095 0.905 32 H 0.091 0.909 33 H 0.128 0.872 34 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.817 -9.227 -3.421 9.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.195 6.195 3 C -0.007 4.007 4 C -0.185 4.185 5 C -0.122 4.122 6 C 0.391 3.609 7 O -0.428 6.428 8 N -0.304 5.304 9 C 0.120 3.880 10 C -0.579 4.579 11 H 0.069 0.931 12 C -0.166 4.166 13 N -0.548 5.548 14 Si 0.763 3.237 15 H -0.195 1.195 16 H -0.210 1.210 17 H -0.209 1.209 18 C -0.005 4.005 19 C -0.074 4.074 20 C -0.071 4.071 21 N -0.169 5.169 22 O 0.078 5.922 23 N -0.140 5.140 24 H 0.160 0.840 25 H 0.070 0.930 26 H 0.076 0.924 27 H 0.226 0.774 28 H 0.069 0.931 29 H 0.060 0.940 30 H 0.074 0.926 31 H 0.114 0.886 32 H 0.110 0.890 33 H 0.146 0.854 34 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 1.456 -8.369 -3.530 9.199 hybrid contribution -0.743 -0.200 1.101 1.343 sum 0.713 -8.569 -2.429 8.935 Atomic orbital electron populations 1.23326 0.75365 1.06089 1.02090 1.86172 1.24073 1.19679 1.89602 1.22093 0.91034 0.86058 1.01530 1.22333 0.94536 0.94519 1.07153 1.24114 0.87556 0.93929 1.06616 1.16567 0.84773 0.82287 0.77305 1.90782 1.27254 1.71808 1.52940 1.48057 1.09602 1.04797 1.67948 1.19499 0.78035 0.93772 0.96655 1.21526 1.04263 1.39077 0.93005 0.93099 1.25341 0.96621 0.95290 0.99351 1.69947 1.13210 1.40332 1.31292 0.85961 0.77801 0.78012 0.81974 1.19520 1.20997 1.20896 1.21404 0.86476 0.97369 0.95217 1.19725 0.88653 1.00023 0.98950 1.29170 0.93891 0.92269 0.91726 1.81242 1.13456 1.12088 1.10100 1.85506 1.11861 1.27922 1.66865 1.74034 1.18103 0.97337 1.24543 0.84024 0.93010 0.92436 0.77423 0.93086 0.93982 0.92631 0.88639 0.89027 0.85446 0.84905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 10.73 113.37 1.22 1.77 16 2 O -0.29 -8.14 10.57 -90.51 -0.96 -9.10 16 3 C 0.19 6.33 8.00 85.78 0.69 7.02 16 4 C -0.16 -5.12 10.97 22.80 0.25 -4.87 16 5 C -0.06 -2.01 6.87 24.36 0.17 -1.85 16 6 C 0.61 21.36 7.61 86.70 0.66 22.02 16 7 O -0.55 -19.83 16.40 -3.96 -0.06 -19.90 16 8 N -0.58 -19.45 2.47 -829.93 -2.05 -21.50 16 9 C 0.24 9.83 4.79 85.63 0.41 10.24 16 10 C -0.54 -25.77 8.55 25.60 0.22 -25.55 16 11 H 0.05 2.49 7.81 -2.91 -0.02 2.46 16 12 C 0.04 1.77 5.46 84.66 0.46 2.23 16 13 N -0.91 -47.52 13.29 21.45 0.28 -47.23 16 14 Si 0.94 41.04 29.54 68.60 2.03 43.06 16 15 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 16 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 17 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 18 C 0.12 3.16 5.42 86.38 0.47 3.63 16 19 C -0.03 -0.66 6.02 28.79 0.17 -0.48 16 20 C 0.25 6.00 15.43 89.44 1.38 7.38 16 21 N -0.49 -14.78 18.54 20.01 0.37 -14.41 16 22 O 0.14 5.95 7.37 65.65 0.48 6.43 16 23 N -0.42 -16.28 11.50 -172.01 -1.98 -18.26 16 24 H 0.14 1.86 8.14 -2.39 -0.02 1.84 16 25 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 27 H 0.21 5.23 8.06 -2.91 -0.02 5.21 16 28 H 0.05 2.07 8.02 -2.39 -0.02 2.05 16 29 H 0.04 1.87 5.39 -2.39 -0.01 1.86 16 30 H 0.26 13.42 8.31 -92.71 -0.77 12.65 16 31 H 0.10 2.53 8.11 -2.38 -0.02 2.51 16 32 H 0.09 2.44 7.23 -2.39 -0.02 2.43 16 33 H 0.13 2.23 8.14 -2.39 -0.02 2.21 16 34 H 0.13 2.34 8.14 -2.39 -0.02 2.32 16 Total: -1.00 -61.10 314.50 5.34 -55.76 By element: Atomic # 1 Polarization: 2.48 SS G_CDS: 1.14 Total: 3.62 kcal Atomic # 6 Polarization: 15.44 SS G_CDS: 6.09 Total: 21.53 kcal Atomic # 7 Polarization: -98.03 SS G_CDS: -3.38 Total: -101.40 kcal Atomic # 8 Polarization: -22.03 SS G_CDS: -0.54 Total: -22.57 kcal Atomic # 14 Polarization: 41.04 SS G_CDS: 2.03 Total: 43.06 kcal Total: -61.10 5.34 -55.76 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346764851.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.355 kcal (2) G-P(sol) polarization free energy of solvation -61.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds