Wall clock time and date at job start Wed Apr 15 2020 11:43:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35678 * 116.99866 * 2 1 4 4 C 1.38671 * 119.64438 * 180.02562 * 3 2 1 5 5 C 1.39166 * 119.01930 * 180.27677 * 4 3 2 6 6 N 1.39406 * 120.83099 * 179.72568 * 5 4 3 7 7 C 1.34780 * 119.99941 * 212.48141 * 6 5 4 8 8 O 1.21364 * 119.99739 * 5.25837 * 7 6 5 9 9 C 1.49375 * 120.00036 * 185.26176 * 7 6 5 10 10 O 1.21354 * 119.99758 * 359.97438 * 9 7 6 11 11 N 1.34772 * 119.99839 * 179.97438 * 9 7 6 12 12 C 1.46496 * 120.00033 * 180.02562 * 11 9 7 13 13 C 1.50696 * 109.47526 * 180.02562 * 12 11 9 14 14 H 1.08004 * 119.99913 * 0.02562 * 13 12 11 15 15 C 1.37879 * 120.00182 * 179.97438 * 13 12 11 16 16 N 1.31507 * 120.00339 * 0.02562 * 15 13 12 17 17 Si 1.86809 * 119.99837 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.46934 * 90.00421 * 17 15 13 19 19 H 1.48499 * 109.46606 * 210.00313 * 17 15 13 20 20 H 1.48496 * 109.47068 * 330.00287 * 17 15 13 21 21 C 1.39604 * 118.33750 * 359.46529 * 5 4 3 22 22 C 1.37803 * 119.19338 * 0.55557 * 21 5 4 23 23 N 1.32052 * 120.91087 * 359.70552 * 22 21 5 24 24 H 1.08996 * 109.47347 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46847 * 299.99701 * 1 2 3 26 26 H 1.08997 * 109.47022 * 59.99744 * 1 2 3 27 27 H 1.07995 * 120.48553 * 0.02562 * 4 3 2 28 28 H 0.96997 * 120.00565 * 32.47043 * 6 5 4 29 29 H 0.97003 * 120.00355 * 0.02562 * 11 9 7 30 30 H 1.09011 * 109.47365 * 300.00138 * 12 11 9 31 31 H 1.09001 * 109.47196 * 60.00118 * 12 11 9 32 32 H 0.96996 * 120.00852 * 179.97438 * 16 15 13 33 33 H 1.07999 * 120.40724 * 180.28498 * 21 5 4 34 34 H 1.07996 * 119.54753 * 179.72077 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4302 1.2729 -0.0005 5 6 4.0484 2.5197 0.0053 6 7 5.4383 2.6280 0.0108 7 6 6.0313 3.6602 0.6428 8 8 5.3630 4.4420 1.2871 9 6 7.5110 3.8421 0.5501 10 8 8.1793 3.0601 -0.0938 11 7 8.1039 4.8745 1.1817 12 6 9.5551 5.0532 1.0904 13 6 9.9620 6.2708 1.8795 14 1 9.2144 6.8532 2.3977 15 6 11.2888 6.6409 1.9409 16 7 12.1992 5.9316 1.3105 17 14 11.7930 8.1507 2.9186 18 1 12.0956 7.7561 4.3178 19 1 13.0004 8.7581 2.3034 20 1 10.6839 9.1381 2.9115 21 6 3.2420 3.6593 0.0001 22 6 1.8717 3.5130 0.0010 23 7 1.3175 2.3144 0.0010 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 4.0205 0.3686 -0.0014 28 1 5.9786 1.9605 -0.4402 29 1 7.5698 5.4993 1.6967 30 1 10.0557 4.1738 1.4959 31 1 9.8401 5.1844 0.0465 32 1 13.1325 6.1920 1.3533 33 1 3.6865 4.6435 -0.0002 34 1 1.2424 4.3907 0.0016 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354808664.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:15 Heat of formation + Delta-G solvation = -91.598430 kcal Electronic energy + Delta-G solvation = -20362.761699 eV Core-core repulsion = 16874.486435 eV Total energy + Delta-G solvation = -3488.275264 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.38527 -41.33509 -39.88605 -38.76032 -36.89061 -36.06826 -34.39525 -32.29981 -31.66757 -29.76392 -28.21904 -26.66277 -24.69494 -24.63036 -23.06027 -21.58942 -20.41506 -19.63774 -18.44440 -18.01567 -17.59229 -17.39829 -17.01869 -16.88723 -16.69742 -16.65139 -15.99258 -15.56707 -15.00575 -14.96187 -14.83427 -14.45061 -14.08666 -13.92229 -13.43822 -13.04799 -12.87739 -12.73356 -12.70951 -12.38512 -12.22890 -11.99400 -11.53335 -11.03103 -10.85037 -10.64137 -10.09386 -9.98315 -9.58884 -8.31575 -6.47559 -0.28499 0.12117 0.47261 1.07244 1.45223 1.45955 1.57681 2.00395 2.10248 2.36176 2.61026 2.71383 3.04146 3.32010 3.36720 3.82564 4.01192 4.04985 4.39702 4.47239 4.47950 4.68067 4.81392 4.89216 4.96503 4.97996 5.17037 5.22401 5.36483 5.50308 5.76205 5.81331 6.18514 6.34976 6.55291 6.64860 6.78547 6.96114 7.25389 8.79949 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.050063 B = 0.002839 C = 0.002729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.163709 B = 9859.588455 C =10256.587542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.317 6.317 3 C 0.328 3.672 4 C -0.218 4.218 5 C 0.215 3.785 6 N -0.633 5.633 7 C 0.527 3.473 8 O -0.504 6.504 9 C 0.496 3.504 10 O -0.554 6.554 11 N -0.670 5.670 12 C 0.262 3.738 13 C -0.561 4.561 14 H 0.081 0.919 15 C 0.010 3.990 16 N -0.925 5.925 17 Si 0.981 3.019 18 H -0.271 1.271 19 H -0.282 1.282 20 H -0.259 1.259 21 C -0.221 4.221 22 C 0.163 3.837 23 N -0.558 5.558 24 H 0.122 0.878 25 H 0.057 0.943 26 H 0.060 0.940 27 H 0.162 0.838 28 H 0.435 0.565 29 H 0.414 0.586 30 H 0.006 0.994 31 H 0.007 0.993 32 H 0.271 0.729 33 H 0.145 0.855 34 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.124 -7.761 -2.729 23.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.224 6.224 3 C 0.149 3.851 4 C -0.241 4.241 5 C 0.112 3.888 6 N -0.280 5.280 7 C 0.309 3.691 8 O -0.377 6.377 9 C 0.275 3.725 10 O -0.434 6.434 11 N -0.320 5.320 12 C 0.141 3.859 13 C -0.599 4.599 14 H 0.099 0.901 15 C -0.190 4.190 16 N -0.563 5.563 17 Si 0.805 3.195 18 H -0.197 1.197 19 H -0.208 1.208 20 H -0.183 1.183 21 C -0.244 4.244 22 C 0.008 3.992 23 N -0.284 5.284 24 H 0.141 0.859 25 H 0.076 0.924 26 H 0.078 0.922 27 H 0.180 0.820 28 H 0.276 0.724 29 H 0.251 0.749 30 H 0.024 0.976 31 H 0.025 0.975 32 H 0.080 0.920 33 H 0.163 0.837 34 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -22.641 -8.080 -2.756 24.197 hybrid contribution 1.496 0.642 0.291 1.653 sum -21.145 -7.439 -2.465 22.551 Atomic orbital electron populations 1.23094 0.75473 1.04742 1.02486 1.86220 1.24625 1.23961 1.87618 1.19593 0.88798 0.85275 0.91471 1.20780 0.92906 0.97970 1.12478 1.17764 0.82415 0.93919 0.94706 1.42973 1.05136 1.27275 1.52663 1.20133 0.88364 0.81459 0.79134 1.90765 1.65220 1.43129 1.38579 1.20043 0.88068 0.82897 0.81470 1.90737 1.65754 1.44661 1.42261 1.46147 1.10596 1.26851 1.48410 1.18857 0.74256 0.96465 0.96342 1.21565 0.94137 1.11385 1.32831 0.90126 1.25948 0.96111 1.00560 0.96380 1.70087 1.02262 1.40910 1.43052 0.85202 0.78015 0.78134 0.78190 1.19656 1.20752 1.18290 1.22138 0.95217 0.99304 1.07733 1.22722 0.91944 0.94237 0.90337 1.67419 1.41002 0.99013 1.20973 0.85942 0.92391 0.92153 0.82020 0.72413 0.74897 0.97573 0.97496 0.92050 0.83713 0.78780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.48 10.38 113.37 1.18 1.66 16 2 O -0.32 -6.30 10.47 -89.96 -0.94 -7.24 16 3 C 0.33 7.21 7.48 84.72 0.63 7.85 16 4 C -0.22 -4.64 9.99 22.60 0.23 -4.41 16 5 C 0.21 5.04 6.32 38.49 0.24 5.29 16 6 N -0.63 -15.75 5.33 -304.37 -1.62 -17.37 16 7 C 0.53 16.30 7.65 87.25 0.67 16.97 16 8 O -0.50 -16.46 14.18 -3.29 -0.05 -16.51 16 9 C 0.50 18.90 7.89 87.25 0.69 19.59 16 10 O -0.55 -23.74 16.48 -3.26 -0.05 -23.80 16 11 N -0.67 -27.95 5.54 -468.23 -2.59 -30.55 16 12 C 0.26 13.60 5.43 85.63 0.46 14.07 16 13 C -0.56 -29.67 9.28 25.60 0.24 -29.44 16 14 H 0.08 3.94 7.60 -2.91 -0.02 3.92 16 15 C 0.01 0.56 5.46 84.66 0.46 1.03 16 16 N -0.92 -53.48 13.29 21.45 0.28 -53.19 16 17 Si 0.98 41.45 29.54 68.60 2.03 43.47 16 18 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 19 H -0.28 -11.75 7.11 99.48 0.71 -11.05 16 20 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 21 C -0.22 -5.02 8.73 22.50 0.20 -4.82 16 22 C 0.16 3.13 11.17 84.56 0.94 4.07 16 23 N -0.56 -11.99 9.21 -309.17 -2.85 -14.83 16 24 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 25 H 0.06 0.79 8.10 -2.39 -0.02 0.77 16 26 H 0.06 0.79 8.10 -2.39 -0.02 0.77 16 27 H 0.16 2.81 8.06 -2.91 -0.02 2.79 16 28 H 0.44 9.46 8.30 -92.71 -0.77 8.69 16 29 H 0.41 15.64 7.79 -92.71 -0.72 14.92 16 30 H 0.01 0.36 8.14 -2.38 -0.02 0.34 16 31 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 32 H 0.27 14.62 8.31 -92.71 -0.77 13.85 16 33 H 0.15 3.46 6.48 -2.91 -0.02 3.44 16 34 H 0.20 2.39 8.06 -2.91 -0.02 2.36 16 Total: -1.00 -65.97 310.36 -0.18 -66.15 By element: Atomic # 1 Polarization: 22.34 SS G_CDS: -0.33 Total: 22.02 kcal Atomic # 6 Polarization: 25.91 SS G_CDS: 5.94 Total: 31.85 kcal Atomic # 7 Polarization: -109.16 SS G_CDS: -6.78 Total: -115.94 kcal Atomic # 8 Polarization: -46.51 SS G_CDS: -1.04 Total: -47.55 kcal Atomic # 14 Polarization: 41.45 SS G_CDS: 2.03 Total: 43.47 kcal Total: -65.97 -0.18 -66.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354808664.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.447 kcal (2) G-P(sol) polarization free energy of solvation -65.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds