Wall clock time and date at job start Wed Apr 15 2020 11:43:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35725 * 116.99863 * 2 1 4 4 C 1.39225 * 120.37886 * 180.02562 * 3 2 1 5 5 C 1.38325 * 118.44611 * 180.02562 * 4 3 2 6 6 C 1.39471 * 119.13077 * 0.02562 * 5 4 3 7 7 C 1.47923 * 119.65795 * 179.97438 * 6 5 4 8 8 O 1.21550 * 119.99675 * 0.02562 * 7 6 5 9 9 N 1.34772 * 120.00343 * 179.97438 * 7 6 5 10 10 C 1.46493 * 120.00489 * 179.97438 * 9 7 6 11 11 C 1.50700 * 109.47549 * 180.02562 * 10 9 7 12 12 O 1.21299 * 119.99858 * 0.02562 * 11 10 9 13 13 N 1.34772 * 120.00140 * 180.02562 * 11 10 9 14 14 C 1.37098 * 119.99760 * 179.97438 * 13 11 10 15 15 H 1.08002 * 120.00575 * 0.02562 * 14 13 11 16 16 C 1.38950 * 119.99962 * 179.97438 * 14 13 11 17 17 N 1.31409 * 120.00040 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00174 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47199 * 60.00665 * 18 16 14 20 20 H 1.48503 * 109.47335 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47598 * 300.00840 * 18 16 14 22 22 N 1.32796 * 120.68234 * 359.97438 * 6 5 4 23 23 C 1.31377 * 121.69861 * 0.04599 * 22 6 5 24 24 H 1.08996 * 109.47157 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.46831 * 299.99985 * 1 2 3 26 26 H 1.08999 * 109.47566 * 59.99047 * 1 2 3 27 27 H 1.08001 * 120.77935 * 0.02562 * 4 3 2 28 28 H 1.07996 * 120.43337 * 179.72950 * 5 4 3 29 29 H 0.97008 * 119.99645 * 0.02562 * 9 7 6 30 30 H 1.09002 * 109.47556 * 300.00350 * 10 9 7 31 31 H 1.09005 * 109.47050 * 60.00367 * 10 9 7 32 32 H 0.97003 * 120.00411 * 0.02562 * 13 11 10 33 33 H 0.97006 * 120.00447 * 179.97438 * 17 16 14 34 34 H 1.08000 * 119.59745 * 179.97438 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2093 0.0000 4 6 3.4350 1.2914 -0.0005 5 6 4.0210 2.5444 0.0000 6 6 3.2051 3.6755 0.0017 7 6 3.8195 5.0212 0.0028 8 8 5.0294 5.1368 0.0019 9 7 3.0376 6.1190 0.0039 10 6 3.6460 7.4516 0.0056 11 6 2.5622 8.4987 0.0072 12 8 1.3961 8.1646 0.0073 13 7 2.8885 9.8063 0.0084 14 6 1.9024 10.7588 0.0093 15 1 0.8642 10.4614 0.0094 16 6 2.2388 12.1070 0.0111 17 7 3.5021 12.4690 0.0114 18 14 0.8954 13.4048 0.0115 19 1 0.0521 13.2440 1.2233 20 1 1.5121 14.7558 0.0129 21 1 0.0537 13.2467 -1.2016 22 7 1.8825 3.5570 0.0021 23 6 1.2947 2.3821 0.0020 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5140 -0.8899 27 1 4.0414 0.3977 -0.0014 28 1 5.0963 2.6454 0.0040 29 1 2.0720 6.0266 0.0042 30 1 4.2641 7.5677 0.8959 31 1 4.2646 7.5698 -0.8841 32 1 3.8210 10.0736 0.0079 33 1 3.7370 13.4102 0.0123 34 1 0.2162 2.3252 0.0028 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360621584.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:19 Heat of formation + Delta-G solvation = -97.752840 kcal Electronic energy + Delta-G solvation = -20304.849970 eV Core-core repulsion = 16816.307831 eV Total energy + Delta-G solvation = -3488.542139 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.96478 -40.83037 -39.93976 -38.85746 -36.27980 -35.39706 -33.59637 -33.37299 -31.93591 -29.43079 -28.37664 -26.60623 -25.20675 -24.07656 -21.87706 -21.38822 -20.14352 -19.53814 -19.01599 -18.23025 -17.45450 -17.01164 -16.75790 -16.72416 -16.57926 -16.04728 -15.65840 -15.64840 -15.17274 -15.11676 -14.45793 -14.28792 -13.94882 -13.76228 -13.56426 -13.54259 -12.90185 -12.82510 -12.47207 -12.45369 -12.13321 -11.56818 -11.48105 -10.90235 -10.64214 -10.54853 -10.28574 -10.09521 -9.58620 -8.50999 -6.01385 -0.41882 0.10471 1.38035 1.42596 1.53678 1.60457 1.90287 1.91812 2.11752 2.31147 2.74397 3.05882 3.13818 3.15876 3.44961 3.68131 3.89634 4.13696 4.21949 4.34733 4.39196 4.39947 4.40756 4.54014 4.72439 4.79416 4.93526 5.19887 5.29673 5.38009 5.91028 6.08127 6.32311 6.48588 6.69132 7.02428 7.04582 7.43234 7.94354 8.65737 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.034618 B = 0.002989 C = 0.002757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.634465 B = 9365.161991 C =10153.350955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 O -0.312 6.312 3 C 0.109 3.891 4 C -0.115 4.115 5 C -0.064 4.064 6 C 0.013 3.987 7 C 0.572 3.428 8 O -0.567 6.567 9 N -0.693 5.693 10 C 0.118 3.882 11 C 0.431 3.569 12 O -0.624 6.624 13 N -0.558 5.558 14 C -0.339 4.339 15 H 0.086 0.914 16 C -0.010 4.010 17 N -0.916 5.916 18 Si 0.998 3.002 19 H -0.270 1.270 20 H -0.271 1.271 21 H -0.270 1.270 22 N -0.442 5.442 23 C 0.015 3.985 24 H 0.128 0.872 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.180 0.820 28 H 0.165 0.835 29 H 0.418 0.582 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.400 0.600 33 H 0.280 0.720 34 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.330 -23.447 -0.018 23.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.223 6.223 3 C 0.059 3.941 4 C -0.141 4.141 5 C -0.085 4.085 6 C -0.124 4.124 7 C 0.358 3.642 8 O -0.447 6.447 9 N -0.346 5.346 10 C -0.009 4.009 11 C 0.218 3.782 12 O -0.512 6.512 13 N -0.193 5.193 14 C -0.468 4.468 15 H 0.103 0.897 16 C -0.211 4.211 17 N -0.556 5.556 18 Si 0.821 3.179 19 H -0.195 1.195 20 H -0.195 1.195 21 H -0.195 1.195 22 N -0.154 5.154 23 C -0.147 4.147 24 H 0.146 0.854 25 H 0.089 0.911 26 H 0.089 0.911 27 H 0.197 0.803 28 H 0.182 0.818 29 H 0.257 0.743 30 H 0.118 0.882 31 H 0.118 0.882 32 H 0.234 0.766 33 H 0.090 0.910 34 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -2.558 -22.769 -0.017 22.912 hybrid contribution -0.214 0.462 0.001 0.509 sum -2.772 -22.307 -0.017 22.479 Atomic orbital electron populations 1.23553 0.75501 1.06542 1.02940 1.86066 1.24138 1.24916 1.87138 1.20443 0.93599 0.86142 0.93887 1.21216 0.91903 0.98974 1.01962 1.22072 1.02524 0.90407 0.93519 1.20761 0.90071 0.93561 1.07999 1.18096 0.85887 0.84052 0.76126 1.90744 1.14219 1.87152 1.52574 1.45611 1.12063 1.04305 1.72641 1.20888 0.94089 0.81197 1.04735 1.20400 0.89987 0.84075 0.83712 1.90489 1.21426 1.81331 1.57926 1.41817 1.09910 1.04180 1.63409 1.19710 0.89930 0.86613 1.50569 0.89651 1.26136 0.99599 0.99629 0.95708 1.69673 1.17610 1.19129 1.49154 0.84922 0.77392 0.76523 0.79111 1.19482 1.19500 1.19492 1.67364 1.11041 1.28849 1.08196 1.23389 1.02007 0.86140 1.03213 0.85382 0.91128 0.91120 0.80259 0.81792 0.74332 0.88192 0.88181 0.76601 0.91008 0.79397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.06 9.82 113.37 1.11 1.17 16 2 O -0.31 -4.31 10.50 -90.47 -0.95 -5.26 16 3 C 0.11 1.90 6.72 22.75 0.15 2.05 16 4 C -0.11 -1.95 10.12 22.53 0.23 -1.72 16 5 C -0.06 -1.43 9.62 22.59 0.22 -1.21 16 6 C 0.01 0.38 6.74 41.86 0.28 0.67 16 7 C 0.57 19.95 7.80 86.81 0.68 20.63 16 8 O -0.57 -21.51 16.31 -3.87 -0.06 -21.57 16 9 N -0.69 -25.90 5.52 -469.64 -2.59 -28.49 16 10 C 0.12 4.57 6.15 85.63 0.53 5.10 16 11 C 0.43 20.76 7.85 87.66 0.69 21.45 16 12 O -0.62 -33.89 15.24 -3.09 -0.05 -33.94 16 13 N -0.56 -28.66 5.29 -306.98 -1.62 -30.28 16 14 C -0.34 -19.02 9.68 84.04 0.81 -18.20 16 15 H 0.09 5.03 7.16 -2.91 -0.02 5.01 16 16 C -0.01 -0.53 5.50 84.93 0.47 -0.06 16 17 N -0.92 -49.11 13.05 21.66 0.28 -48.83 16 18 Si 1.00 42.20 29.55 68.60 2.03 44.23 16 19 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 20 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 21 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 22 N -0.44 -12.35 9.52 -184.53 -1.76 -14.10 16 23 C 0.01 0.30 10.21 85.00 0.87 1.17 16 24 H 0.13 0.28 8.14 -2.39 -0.02 0.27 16 25 H 0.07 0.38 7.67 -2.38 -0.02 0.36 16 26 H 0.07 0.38 7.68 -2.39 -0.02 0.36 16 27 H 0.18 1.90 8.06 -2.91 -0.02 1.87 16 28 H 0.16 3.28 7.63 -2.91 -0.02 3.26 16 29 H 0.42 16.36 6.76 -92.70 -0.63 15.73 16 30 H 0.10 3.60 8.14 -2.39 -0.02 3.58 16 31 H 0.10 3.60 8.14 -2.38 -0.02 3.58 16 32 H 0.40 19.59 7.90 -92.71 -0.73 18.86 16 33 H 0.28 14.07 8.31 -92.70 -0.77 13.30 16 34 H 0.19 2.65 6.31 -2.91 -0.02 2.63 16 Total: -1.00 -70.68 308.42 1.13 -69.55 By element: Atomic # 1 Polarization: 37.85 SS G_CDS: -0.19 Total: 37.66 kcal Atomic # 6 Polarization: 25.00 SS G_CDS: 6.03 Total: 31.03 kcal Atomic # 7 Polarization: -116.01 SS G_CDS: -5.69 Total: -121.70 kcal Atomic # 8 Polarization: -59.71 SS G_CDS: -1.06 Total: -60.77 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.23 kcal Total: -70.68 1.13 -69.55 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360621584.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.202 kcal (2) G-P(sol) polarization free energy of solvation -70.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds