Wall clock time and date at job start Wed Apr 15 2020 11:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35731 * 117.00272 * 2 1 4 4 C 1.38927 * 119.60208 * 179.97438 * 3 2 1 5 5 C 1.38293 * 119.19098 * 179.97438 * 4 3 2 6 6 C 1.39446 * 118.42201 * 0.02562 * 5 4 3 7 7 N 1.39908 * 120.43033 * 179.97438 * 6 5 4 8 8 C 1.34778 * 120.00168 * 32.71692 * 7 6 5 9 9 O 1.21387 * 119.99912 * 5.27523 * 8 7 6 10 10 C 1.49335 * 119.99959 * 185.27014 * 8 7 6 11 11 O 1.21365 * 120.00238 * 0.02562 * 10 8 7 12 12 N 1.34777 * 119.99941 * 180.02562 * 10 8 7 13 13 C 1.46504 * 120.00005 * 180.02562 * 12 10 8 14 14 C 1.50695 * 109.46787 * 179.97438 * 13 12 10 15 15 H 1.08001 * 120.00448 * 359.97438 * 14 13 12 16 16 C 1.37877 * 119.99571 * 179.97438 * 14 13 12 17 17 N 1.31513 * 120.00101 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 119.99962 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47161 * 59.99830 * 18 16 14 20 20 H 1.48502 * 109.46963 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.46800 * 299.99612 * 18 16 14 22 22 C 1.38726 * 119.13719 * 359.97438 * 6 5 4 23 23 N 1.31929 * 120.73206 * 0.02562 * 22 6 5 24 24 H 1.08993 * 109.47145 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46894 * 299.99858 * 1 2 3 26 26 H 1.09000 * 109.46986 * 59.99669 * 1 2 3 27 27 H 1.07996 * 120.40716 * 0.27986 * 4 3 2 28 28 H 1.08005 * 120.78667 * 180.02562 * 5 4 3 29 29 H 0.97004 * 119.99708 * 212.72826 * 7 6 5 30 30 H 0.96994 * 119.99836 * 359.97438 * 12 10 8 31 31 H 1.09001 * 109.46664 * 299.99479 * 13 12 10 32 32 H 1.08995 * 109.46986 * 59.99249 * 13 12 10 33 33 H 0.97008 * 120.00230 * 180.02562 * 17 16 14 34 34 H 1.08004 * 119.63358 * 179.97438 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0453 1.2093 0.0000 4 6 3.4332 1.2723 0.0005 5 6 4.0522 2.5090 0.0000 6 6 3.2526 3.6515 -0.0005 7 7 3.8347 4.9237 -0.0006 8 6 5.0083 5.1279 -0.6310 9 8 5.5128 4.2339 -1.2789 10 6 5.6880 6.4540 -0.5325 11 8 5.1838 7.3477 0.1156 12 7 6.8613 6.6583 -1.1634 13 6 7.5284 7.9590 -1.0663 14 6 8.8122 7.9252 -1.8548 15 1 9.1024 7.0247 -2.3757 16 6 9.6162 9.0438 -1.9111 17 7 9.2626 10.1404 -1.2771 18 14 11.2073 9.0022 -2.8890 19 1 10.9058 8.7050 -4.3124 20 1 11.8835 10.3206 -2.7905 21 1 12.0977 7.9476 -2.3410 22 6 1.8726 3.5101 -0.0010 23 7 1.3175 2.3133 -0.0005 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 4.0215 0.3667 -0.0036 28 1 5.1294 2.5880 0.0000 29 1 3.3936 5.6588 0.4533 30 1 7.2644 5.9439 -1.6810 31 1 6.8750 8.7333 -1.4683 32 1 7.7497 8.1768 -0.0215 33 1 9.8281 10.9276 -1.3170 34 1 1.2457 4.3895 -0.0010 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427870607.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:22 Heat of formation + Delta-G solvation = -91.512187 kcal Electronic energy + Delta-G solvation = -20333.523401 eV Core-core repulsion = 16845.251877 eV Total energy + Delta-G solvation = -3488.271524 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.31656 -41.32794 -39.83336 -38.75242 -36.68817 -35.83621 -34.36187 -33.41532 -30.94536 -29.69077 -28.22013 -26.41771 -24.76630 -24.57108 -23.15733 -21.47497 -20.34473 -19.43056 -18.69581 -18.38170 -17.86939 -17.28618 -17.08278 -16.93799 -16.81283 -15.96135 -15.69530 -15.41581 -15.20438 -14.92375 -14.49704 -14.43988 -14.06875 -13.88242 -13.79387 -13.03923 -12.85556 -12.70102 -12.68094 -12.52761 -12.22693 -11.68100 -11.55135 -11.04083 -10.85516 -10.83138 -10.47973 -10.05454 -9.11187 -8.30915 -6.46941 -0.23396 0.09389 0.47592 1.20357 1.45348 1.47744 1.56277 2.06033 2.11980 2.36307 2.65572 2.67606 3.04559 3.26571 3.41497 3.74001 3.88808 4.02569 4.46991 4.47590 4.52971 4.60454 4.80927 4.88383 4.98891 5.02385 5.18300 5.25387 5.36725 5.50931 5.77780 5.86337 6.17309 6.44148 6.57599 6.67284 6.72811 6.99492 7.26073 8.80330 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.050142 B = 0.002811 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.283566 B = 9956.956521 C =10403.113216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.317 6.317 3 C 0.295 3.705 4 C -0.169 4.169 5 C -0.050 4.050 6 C 0.047 3.953 7 N -0.624 5.624 8 C 0.522 3.478 9 O -0.517 6.517 10 C 0.495 3.505 11 O -0.556 6.556 12 N -0.672 5.672 13 C 0.263 3.737 14 C -0.563 4.563 15 H 0.080 0.920 16 C 0.011 3.989 17 N -0.925 5.925 18 Si 0.981 3.019 19 H -0.264 1.264 20 H -0.283 1.283 21 H -0.264 1.264 22 C 0.131 3.869 23 N -0.529 5.529 24 H 0.122 0.878 25 H 0.059 0.941 26 H 0.056 0.944 27 H 0.164 0.836 28 H 0.148 0.852 29 H 0.434 0.566 30 H 0.414 0.586 31 H 0.006 0.994 32 H 0.006 0.994 33 H 0.271 0.729 34 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.311 -17.979 2.780 23.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.224 6.224 3 C 0.116 3.884 4 C -0.189 4.189 5 C -0.077 4.077 6 C -0.049 4.049 7 N -0.272 5.272 8 C 0.304 3.696 9 O -0.392 6.392 10 C 0.275 3.725 11 O -0.436 6.436 12 N -0.322 5.322 13 C 0.141 3.859 14 C -0.600 4.600 15 H 0.098 0.902 16 C -0.190 4.190 17 N -0.563 5.563 18 Si 0.804 3.196 19 H -0.189 1.189 20 H -0.209 1.209 21 H -0.189 1.189 22 C -0.027 4.027 23 N -0.253 5.253 24 H 0.140 0.860 25 H 0.078 0.922 26 H 0.075 0.925 27 H 0.181 0.819 28 H 0.166 0.834 29 H 0.275 0.725 30 H 0.250 0.750 31 H 0.024 0.976 32 H 0.024 0.976 33 H 0.079 0.921 34 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -16.012 -18.107 2.817 24.335 hybrid contribution 1.417 0.743 -0.308 1.629 sum -14.596 -17.364 2.509 22.822 Atomic orbital electron populations 1.23085 0.75724 1.04737 1.02373 1.86241 1.24440 1.23949 1.87814 1.20060 0.89821 0.85047 0.93473 1.21148 0.91894 0.99502 1.06401 1.21553 1.01514 0.90461 0.94212 1.18733 0.93802 0.84959 1.07406 1.42847 1.21121 1.10886 1.52351 1.20082 0.82082 0.88030 0.79382 1.90751 1.64662 1.44497 1.39277 1.20126 0.82867 0.88187 0.81340 1.90730 1.65558 1.45166 1.42096 1.46154 1.20413 1.17221 1.48452 1.18832 0.91609 0.79169 0.96244 1.21540 1.05672 0.99960 1.32856 0.90200 1.25947 1.02219 0.94440 0.96382 1.70089 1.39880 1.03309 1.43000 0.85259 0.77791 0.77581 0.78942 1.18915 1.20851 1.18878 1.22611 0.90239 0.95087 0.94796 1.67365 1.40193 0.98478 1.19248 0.85970 0.92237 0.92508 0.81873 0.83415 0.72535 0.74997 0.97600 0.97601 0.92053 0.78997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.46 10.38 113.37 1.18 1.64 16 2 O -0.32 -6.16 10.48 -90.54 -0.95 -7.11 16 3 C 0.30 6.33 7.49 84.80 0.63 6.97 16 4 C -0.17 -3.45 10.03 22.45 0.23 -3.22 16 5 C -0.05 -1.15 8.76 22.57 0.20 -0.95 16 6 C 0.05 1.04 6.31 38.26 0.24 1.28 16 7 N -0.62 -14.77 5.34 -304.46 -1.63 -16.40 16 8 C 0.52 16.03 7.65 87.23 0.67 16.70 16 9 O -0.52 -17.01 14.16 -3.36 -0.05 -17.06 16 10 C 0.49 18.87 7.89 87.23 0.69 19.56 16 11 O -0.56 -23.68 16.48 -3.29 -0.05 -23.74 16 12 N -0.67 -28.25 5.54 -468.26 -2.59 -30.85 16 13 C 0.26 13.71 5.43 85.63 0.46 14.17 16 14 C -0.56 -29.89 9.28 25.60 0.24 -29.66 16 15 H 0.08 3.93 7.60 -2.91 -0.02 3.91 16 16 C 0.01 0.57 5.46 84.65 0.46 1.03 16 17 N -0.92 -53.59 13.29 21.45 0.28 -53.30 16 18 Si 0.98 41.59 29.54 68.60 2.03 43.62 16 19 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 20 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 21 H -0.26 -10.71 7.11 99.48 0.71 -10.01 16 22 C 0.13 2.47 11.11 84.80 0.94 3.42 16 23 N -0.53 -11.14 9.20 -308.38 -2.84 -13.98 16 24 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16 25 H 0.06 0.77 8.10 -2.39 -0.02 0.75 16 26 H 0.06 0.77 8.10 -2.39 -0.02 0.75 16 27 H 0.16 2.65 8.06 -2.91 -0.02 2.63 16 28 H 0.15 3.59 6.47 -2.91 -0.02 3.57 16 29 H 0.43 8.70 8.30 -92.71 -0.77 7.93 16 30 H 0.41 15.81 7.79 -92.71 -0.72 15.09 16 31 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 32 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 33 H 0.27 14.69 8.31 -92.70 -0.77 13.92 16 34 H 0.19 2.41 8.06 -2.91 -0.02 2.38 16 Total: -1.00 -66.42 310.35 -0.19 -66.61 By element: Atomic # 1 Polarization: 21.59 SS G_CDS: -0.33 Total: 21.26 kcal Atomic # 6 Polarization: 25.01 SS G_CDS: 5.94 Total: 30.95 kcal Atomic # 7 Polarization: -107.75 SS G_CDS: -6.77 Total: -114.53 kcal Atomic # 8 Polarization: -46.86 SS G_CDS: -1.05 Total: -47.91 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 2.03 Total: 43.62 kcal Total: -66.42 -0.19 -66.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427870607.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.902 kcal (2) G-P(sol) polarization free energy of solvation -66.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds