Wall clock time and date at job start Wed Apr 15 2020 11:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35728 * 116.99846 * 2 1 4 4 N 1.32148 * 119.73076 * 0.02562 * 3 2 1 5 5 C 1.31993 * 121.71949 * 180.02562 * 4 3 2 6 6 C 1.38099 * 120.99475 * 359.97438 * 5 4 3 7 7 C 1.38705 * 119.35274 * 0.26692 * 6 5 4 8 8 C 1.39036 * 118.41886 * 359.51421 * 7 6 5 9 9 N 1.39889 * 120.51342 * 180.23279 * 8 7 6 10 10 C 1.34775 * 119.99859 * 325.84643 * 9 8 7 11 11 O 1.21393 * 120.00218 * 4.23567 * 10 9 8 12 12 C 1.49335 * 119.99849 * 184.23387 * 10 9 8 13 13 O 1.21363 * 119.99850 * 359.97438 * 12 10 9 14 14 N 1.34770 * 120.00224 * 179.97438 * 12 10 9 15 15 C 1.46499 * 120.00381 * 179.97438 * 14 12 10 16 16 C 1.50700 * 109.47407 * 180.02562 * 15 14 12 17 17 H 1.07999 * 119.99928 * 0.02562 * 16 15 14 18 18 C 1.37873 * 119.99957 * 180.02562 * 16 15 14 19 19 N 1.31519 * 120.00300 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00031 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47164 * 59.99509 * 20 18 16 22 22 H 1.48499 * 109.47258 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47128 * 299.99633 * 20 18 16 24 24 H 1.09003 * 109.46922 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47037 * 299.99497 * 1 2 3 26 26 H 1.08997 * 109.47243 * 59.99926 * 1 2 3 27 27 H 1.08008 * 119.50135 * 179.97438 * 5 4 3 28 28 H 1.07998 * 120.32262 * 180.02562 * 6 5 4 29 29 H 1.08006 * 120.78938 * 179.74911 * 7 6 5 30 30 H 0.97001 * 119.99705 * 145.83750 * 9 8 7 31 31 H 0.97001 * 119.99689 * 0.02562 * 14 12 10 32 32 H 1.08998 * 109.47396 * 300.00512 * 15 14 12 33 33 H 1.09000 * 109.46667 * 60.00126 * 15 14 12 34 34 H 0.96994 * 120.00338 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2094 0.0000 4 7 1.3202 2.3142 0.0005 5 6 1.8782 3.5104 0.0000 6 6 3.2517 3.6544 -0.0005 7 6 4.0539 2.5229 -0.0062 8 6 3.4392 1.2759 -0.0008 9 7 4.2061 0.1059 -0.0012 10 6 5.3806 0.0704 -0.6613 11 8 5.8101 1.0749 -1.1905 12 6 6.1536 -1.2048 -0.7416 13 8 5.7245 -2.2089 -0.2120 14 7 7.3279 -1.2406 -1.4020 15 6 8.0866 -2.4914 -1.4803 16 6 9.3516 -2.2632 -2.2668 17 1 9.5690 -1.2843 -2.6678 18 6 10.2315 -3.3042 -2.4743 19 7 9.9671 -4.4962 -1.9855 20 14 11.8000 -3.0213 -3.4486 21 1 12.6223 -1.9856 -2.7730 22 1 12.5689 -4.2892 -3.5280 23 1 11.4559 -2.5639 -4.8188 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5138 -0.8899 27 1 1.2512 4.3898 0.0001 28 1 3.6967 4.6384 -0.0005 29 1 5.1306 2.6086 -0.0108 30 1 3.8925 -0.6797 0.4736 31 1 7.6711 -0.4379 -1.8249 32 1 8.3399 -2.8263 -0.4744 33 1 7.4828 -3.2521 -1.9752 34 1 10.5862 -5.2285 -2.1312 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427897829.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:23 Heat of formation + Delta-G solvation = -91.044158 kcal Electronic energy + Delta-G solvation = -20727.315800 eV Core-core repulsion = 17239.064571 eV Total energy + Delta-G solvation = -3488.251229 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.39215 -41.27746 -39.69755 -38.81294 -36.85544 -36.00413 -34.38202 -32.87634 -31.14212 -29.72619 -28.21596 -26.63709 -24.85975 -24.10763 -23.29831 -21.49598 -20.40855 -19.39977 -18.72585 -18.36768 -17.84010 -17.37821 -17.09001 -16.90117 -16.74503 -16.07705 -15.92191 -15.51391 -15.03290 -14.96897 -14.49661 -14.32578 -14.07177 -13.93003 -13.55035 -13.02982 -12.75124 -12.72422 -12.69931 -12.23553 -12.22102 -12.12637 -11.56022 -11.10876 -10.84004 -10.65180 -10.37954 -10.07679 -9.16200 -8.31375 -6.47942 -0.24043 0.19680 0.42531 1.19493 1.44975 1.47857 1.56411 1.98978 2.04715 2.35572 2.61276 2.72052 3.03976 3.34101 3.41373 3.79470 4.03045 4.09577 4.39071 4.44453 4.44498 4.75859 4.78446 4.97178 5.04476 5.14589 5.16378 5.23723 5.45269 5.49772 5.76031 5.82306 6.13380 6.39519 6.56040 6.67158 6.75128 6.97439 7.25134 8.80137 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.033913 B = 0.003318 C = 0.003080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.444742 B = 8436.566820 C = 9089.603671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.324 6.324 3 C 0.294 3.706 4 N -0.532 5.532 5 C 0.127 3.873 6 C -0.179 4.179 7 C -0.057 4.057 8 C 0.049 3.951 9 N -0.624 5.624 10 C 0.522 3.478 11 O -0.515 6.515 12 C 0.494 3.506 13 O -0.557 6.557 14 N -0.670 5.670 15 C 0.263 3.737 16 C -0.563 4.563 17 H 0.081 0.919 18 C 0.010 3.990 19 N -0.926 5.926 20 Si 0.983 3.017 21 H -0.263 1.263 22 H -0.283 1.283 23 H -0.264 1.264 24 H 0.117 0.883 25 H 0.065 0.935 26 H 0.059 0.941 27 H 0.202 0.798 28 H 0.177 0.823 29 H 0.151 0.849 30 H 0.429 0.571 31 H 0.414 0.586 32 H 0.006 0.994 33 H 0.004 0.996 34 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.852 16.733 4.419 24.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.232 6.232 3 C 0.113 3.887 4 N -0.256 5.256 5 C -0.028 4.028 6 C -0.199 4.199 7 C -0.084 4.084 8 C -0.047 4.047 9 N -0.271 5.271 10 C 0.304 3.696 11 O -0.391 6.391 12 C 0.274 3.726 13 O -0.437 6.437 14 N -0.320 5.320 15 C 0.141 3.859 16 C -0.601 4.601 17 H 0.099 0.901 18 C -0.190 4.190 19 N -0.564 5.564 20 Si 0.806 3.194 21 H -0.188 1.188 22 H -0.208 1.208 23 H -0.189 1.189 24 H 0.135 0.865 25 H 0.083 0.917 26 H 0.078 0.922 27 H 0.219 0.781 28 H 0.194 0.806 29 H 0.169 0.831 30 H 0.268 0.732 31 H 0.251 0.749 32 H 0.024 0.976 33 H 0.022 0.978 34 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -17.548 16.125 4.405 24.236 hybrid contribution 1.411 -0.459 -0.292 1.512 sum -16.137 15.666 4.114 22.864 Atomic orbital electron populations 1.23083 0.75229 1.04620 1.02636 1.86226 1.24928 1.24183 1.87844 1.19729 0.87410 0.86213 0.95358 1.67452 1.39830 0.98922 1.19399 1.23146 0.93683 0.93849 0.92170 1.22321 0.94316 1.00172 1.03107 1.21837 1.02364 0.89993 0.94203 1.17981 0.87901 0.87781 1.11051 1.42809 1.19130 1.15025 1.50132 1.20087 0.82120 0.88630 0.78762 1.90707 1.68208 1.34901 1.45259 1.20116 0.82990 0.88588 0.80874 1.90728 1.69382 1.36271 1.47323 1.46131 1.19393 1.15517 1.50981 1.18847 0.90171 0.80744 0.96132 1.21543 1.04962 0.97858 1.35729 0.90081 1.25974 1.02272 0.94257 0.96512 1.70095 1.38647 1.02097 1.45558 0.85227 0.77527 0.77708 0.78916 1.18767 1.20820 1.18867 0.86468 0.91675 0.92227 0.78109 0.80575 0.83147 0.73194 0.74926 0.97581 0.97763 0.92023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.64 10.38 113.37 1.18 1.81 16 2 O -0.32 -7.87 10.05 -90.51 -0.91 -8.78 16 3 C 0.29 7.32 7.51 84.97 0.64 7.96 16 4 N -0.53 -11.18 9.21 -308.42 -2.84 -14.02 16 5 C 0.13 1.90 11.17 84.64 0.95 2.84 16 6 C -0.18 -2.77 10.10 22.35 0.23 -2.55 16 7 C -0.06 -1.30 8.81 22.57 0.20 -1.10 16 8 C 0.05 1.31 6.35 38.37 0.24 1.55 16 9 N -0.62 -18.41 5.18 -304.15 -1.58 -19.99 16 10 C 0.52 17.84 7.74 87.23 0.68 18.51 16 11 O -0.52 -17.89 13.92 -3.38 -0.05 -17.94 16 12 C 0.49 20.34 7.89 87.23 0.69 21.03 16 13 O -0.56 -25.71 16.48 -3.29 -0.05 -25.77 16 14 N -0.67 -29.40 5.54 -468.27 -2.59 -32.00 16 15 C 0.26 14.08 5.43 85.63 0.46 14.55 16 16 C -0.56 -30.46 9.28 25.60 0.24 -30.23 16 17 H 0.08 4.04 7.60 -2.91 -0.02 4.02 16 18 C 0.01 0.56 5.46 84.65 0.46 1.02 16 19 N -0.93 -54.44 13.29 21.45 0.28 -54.16 16 20 Si 0.98 42.01 29.54 68.60 2.03 44.03 16 21 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 22 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 23 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 24 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 25 H 0.06 0.98 8.11 -2.39 -0.02 0.96 16 26 H 0.06 0.96 8.11 -2.39 -0.02 0.94 16 27 H 0.20 1.30 8.06 -2.91 -0.02 1.28 16 28 H 0.18 1.48 8.06 -2.91 -0.02 1.45 16 29 H 0.15 3.69 6.27 -2.91 -0.02 3.67 16 30 H 0.43 12.22 8.05 -92.71 -0.75 11.47 16 31 H 0.41 16.42 7.79 -92.71 -0.72 15.70 16 32 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 33 H 0.00 0.26 8.14 -2.39 -0.02 0.24 16 34 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 Total: -1.00 -68.84 309.41 -0.06 -68.90 By element: Atomic # 1 Polarization: 24.60 SS G_CDS: -0.30 Total: 24.30 kcal Atomic # 6 Polarization: 29.46 SS G_CDS: 5.96 Total: 35.42 kcal Atomic # 7 Polarization: -113.44 SS G_CDS: -6.73 Total: -120.17 kcal Atomic # 8 Polarization: -51.48 SS G_CDS: -1.01 Total: -52.49 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.03 kcal Total: -68.84 -0.06 -68.90 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427897829.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.143 kcal (2) G-P(sol) polarization free energy of solvation -68.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds