Wall clock time and date at job start Wed Apr 15 2020 11:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35743 * 117.00189 * 2 1 4 4 C 1.39213 * 120.81482 * 0.02562 * 3 2 1 5 5 C 1.38314 * 119.29120 * 179.97438 * 4 3 2 6 6 N 1.31618 * 120.97054 * 0.02562 * 5 4 3 7 7 C 1.32802 * 121.77923 * 359.69850 * 6 5 4 8 8 C 1.48180 * 119.69916 * 180.29612 * 7 6 5 9 9 O 1.21508 * 120.00162 * 180.29033 * 8 7 6 10 10 N 1.34783 * 119.99913 * 0.28883 * 8 7 6 11 11 C 1.46494 * 120.00028 * 180.02562 * 10 8 7 12 12 C 1.50699 * 109.47003 * 179.97438 * 11 10 8 13 13 O 1.21288 * 120.00267 * 359.97438 * 12 11 10 14 14 N 1.34782 * 120.00072 * 180.02562 * 12 11 10 15 15 C 1.37091 * 120.00111 * 179.97438 * 14 12 11 16 16 H 1.07997 * 120.00339 * 0.02562 * 15 14 12 17 17 C 1.38955 * 120.00111 * 179.97438 * 15 14 12 18 18 N 1.31410 * 119.99655 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00149 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47289 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.47250 * 120.00054 * 19 17 15 22 22 H 1.48502 * 109.46943 * 240.00194 * 19 17 15 23 23 C 1.39102 * 120.60316 * 0.58809 * 7 6 5 24 24 H 1.08997 * 109.47201 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47002 * 299.99956 * 1 2 3 26 26 H 1.08999 * 109.47110 * 59.99685 * 1 2 3 27 27 H 1.08004 * 120.35270 * 359.95559 * 4 3 2 28 28 H 1.07994 * 119.51333 * 179.97438 * 5 4 3 29 29 H 0.97006 * 119.99571 * 359.97438 * 10 8 7 30 30 H 1.08995 * 109.47448 * 299.99919 * 11 10 8 31 31 H 1.09005 * 109.46925 * 59.99867 * 11 10 8 32 32 H 0.97002 * 119.99600 * 0.02562 * 14 12 11 33 33 H 0.97007 * 120.00012 * 179.97438 * 18 17 15 34 34 H 1.08002 * 120.51064 * 179.70864 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2095 0.0000 4 6 1.3038 2.3877 0.0005 5 6 1.9643 3.6029 0.0011 6 7 3.2793 3.6591 0.0006 7 6 4.0262 2.5610 0.0055 8 6 5.5034 2.6779 0.0113 9 8 6.1921 1.6769 0.0105 10 7 6.0831 3.8947 0.0175 11 6 7.5434 4.0104 0.0227 12 6 7.9320 5.4664 0.0285 13 8 7.0735 6.3232 0.0278 14 7 9.2335 5.8165 0.0333 15 6 9.5870 7.1411 0.0381 16 1 8.8227 7.9040 0.0383 17 6 10.9289 7.5021 0.0436 18 7 11.8589 6.5738 0.0449 19 14 11.4105 9.3069 0.0508 20 1 10.1855 10.1462 0.0487 21 1 12.2105 9.6009 1.2668 22 1 12.2185 9.6083 -1.1582 23 6 3.4346 1.3021 -0.0009 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 0.2243 2.3532 0.0002 28 1 1.3927 4.5192 0.0011 29 1 5.5332 4.6939 0.0177 30 1 7.9433 3.5237 0.9122 31 1 7.9491 3.5299 -0.8677 32 1 9.9201 5.1313 0.0328 33 1 12.7957 6.8257 0.0484 34 1 4.0435 0.4101 -0.0016 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588077235.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:26 Heat of formation + Delta-G solvation = -71.271857 kcal Electronic energy + Delta-G solvation = -20290.870484 eV Core-core repulsion = 16803.476647 eV Total energy + Delta-G solvation = -3487.393838 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.02898 -39.53279 -38.42610 -37.85797 -34.48177 -33.69363 -31.84980 -31.72717 -31.31538 -28.20380 -27.67418 -24.89469 -23.64017 -23.61121 -20.64009 -19.62126 -18.81824 -18.01219 -17.56673 -16.62596 -16.29947 -15.94601 -15.76622 -15.36597 -15.23085 -14.75190 -14.51232 -14.19830 -14.10190 -13.97196 -13.41164 -13.33878 -12.76240 -12.16187 -12.04889 -11.88210 -11.71321 -11.60822 -11.11898 -10.38269 -10.32166 -10.24192 -9.70735 -9.61592 -9.51957 -9.22349 -8.78417 -8.59315 -8.06808 -6.48551 -3.90181 0.44933 1.03410 2.60427 2.75691 3.12783 3.24171 3.28841 3.35090 3.73621 3.79777 4.06857 4.16593 4.28483 4.51315 4.66586 4.67204 4.83964 4.89855 5.00290 5.08242 5.19870 5.35196 5.52000 5.70716 5.88684 5.96704 6.09538 6.14099 6.65259 6.78987 7.49460 7.52536 7.88734 7.95274 8.37416 8.49051 9.08018 9.42509 9.90745 10.68525 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.051823 B = 0.002839 C = 0.002697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.169902 B = 9859.043052 C =10378.752974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.308 6.308 3 C 0.160 3.840 4 C -0.247 4.247 5 C 0.138 3.862 6 N -0.476 5.476 7 C 0.123 3.877 8 C 0.567 3.433 9 O -0.539 6.539 10 N -0.682 5.682 11 C 0.106 3.894 12 C 0.429 3.571 13 O -0.592 6.592 14 N -0.550 5.550 15 C -0.303 4.303 16 H 0.106 0.894 17 C 0.024 3.976 18 N -0.895 5.895 19 Si 0.933 3.067 20 H -0.267 1.267 21 H -0.281 1.281 22 H -0.281 1.281 23 C -0.145 4.145 24 H 0.104 0.896 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.143 0.857 28 H 0.167 0.833 29 H 0.423 0.577 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.396 0.604 33 H 0.273 0.727 34 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.504 -11.084 -0.077 23.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.219 6.219 3 C 0.107 3.893 4 C -0.268 4.268 5 C -0.021 4.021 6 N -0.191 5.191 7 C -0.014 4.014 8 C 0.350 3.650 9 O -0.417 6.417 10 N -0.336 5.336 11 C -0.022 4.022 12 C 0.214 3.786 13 O -0.478 6.478 14 N -0.185 5.185 15 C -0.432 4.432 16 H 0.124 0.876 17 C -0.178 4.178 18 N -0.536 5.536 19 Si 0.759 3.241 20 H -0.191 1.191 21 H -0.206 1.206 22 H -0.206 1.206 23 C -0.167 4.167 24 H 0.123 0.877 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.161 0.839 28 H 0.184 0.816 29 H 0.263 0.737 30 H 0.106 0.894 31 H 0.105 0.895 32 H 0.230 0.770 33 H 0.083 0.917 34 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -19.812 -10.591 -0.078 22.465 hybrid contribution -0.256 0.108 0.001 0.278 sum -20.068 -10.483 -0.077 22.641 Atomic orbital electron populations 1.23166 0.77604 1.04530 1.01735 1.86095 1.21981 1.26007 1.87858 1.19188 0.92107 0.84809 0.93209 1.22413 1.01752 0.93222 1.09379 1.22633 0.89654 0.97239 0.92613 1.67698 1.07346 1.31184 1.12852 1.20987 0.94387 0.88581 0.97475 1.17715 0.85704 0.83810 0.77747 1.90780 1.63280 1.36637 1.50964 1.45569 1.07672 1.08906 1.71420 1.21054 0.80588 0.96983 1.03559 1.19710 0.84062 0.89196 0.85606 1.90520 1.49270 1.51083 1.56952 1.41793 1.05022 1.08884 1.62846 1.19784 0.92354 0.83116 1.47980 0.87600 1.25326 0.95350 1.00246 0.96895 1.69626 1.01075 1.33296 1.49576 0.85755 0.78744 0.81790 0.77784 1.19124 1.20643 1.20648 1.21391 0.91941 0.99764 1.03563 0.87724 0.92211 0.92219 0.83918 0.81623 0.73684 0.89448 0.89456 0.77034 0.91680 0.82595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.84 101.05 0.99 1.11 16 2 O -0.31 -2.90 10.51 -18.94 -0.20 -3.09 16 3 C 0.16 1.71 6.73 -38.85 -0.26 1.45 16 4 C -0.25 -2.14 9.12 -39.19 -0.36 -2.50 16 5 C 0.14 1.40 11.17 -17.62 -0.20 1.21 16 6 N -0.48 -6.63 9.54 -9.87 -0.09 -6.72 16 7 C 0.12 1.83 6.75 -83.04 -0.56 1.27 16 8 C 0.57 9.86 7.81 -12.17 -0.10 9.77 16 9 O -0.54 -10.34 16.32 5.36 0.09 -10.26 16 10 N -0.68 -12.48 5.52 -62.33 -0.34 -12.82 16 11 C 0.11 2.01 6.15 -5.20 -0.03 1.98 16 12 C 0.43 10.07 7.85 -10.98 -0.09 9.98 16 13 O -0.59 -15.62 15.24 5.55 0.08 -15.53 16 14 N -0.55 -13.82 5.29 -10.96 -0.06 -13.88 16 15 C -0.30 -8.32 9.68 -14.93 -0.14 -8.46 16 16 H 0.11 3.04 7.16 -52.49 -0.38 2.66 16 17 C 0.02 0.65 5.50 -17.47 -0.10 0.55 16 18 N -0.90 -24.09 13.05 55.50 0.72 -23.37 16 19 Si 0.93 20.72 29.55 -169.99 -5.02 15.70 16 20 H -0.27 -5.93 7.11 56.52 0.40 -5.52 16 21 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 22 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 23 C -0.14 -1.88 9.60 -38.89 -0.37 -2.26 16 24 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 25 H 0.06 0.22 7.71 -51.93 -0.40 -0.18 16 26 H 0.06 0.22 7.71 -51.93 -0.40 -0.18 16 27 H 0.14 0.75 6.45 -52.48 -0.34 0.41 16 28 H 0.17 1.15 8.06 -52.49 -0.42 0.73 16 29 H 0.42 8.00 6.76 -40.82 -0.28 7.72 16 30 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 31 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 32 H 0.40 9.51 7.90 -40.82 -0.32 9.19 16 33 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 34 H 0.16 2.01 7.64 -52.49 -0.40 1.61 16 LS Contribution 308.65 15.07 4.65 4.65 Total: -1.00 -32.79 308.65 -4.72 -37.51 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: -3.34 Total: 13.71 kcal Atomic # 6 Polarization: 15.31 SS G_CDS: -1.21 Total: 14.10 kcal Atomic # 7 Polarization: -57.02 SS G_CDS: 0.23 Total: -56.80 kcal Atomic # 8 Polarization: -28.85 SS G_CDS: -0.03 Total: -28.88 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -32.79 -4.72 -37.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588077235.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.758 kcal (2) G-P(sol) polarization free energy of solvation -32.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds