Wall clock time and date at job start Wed Apr 15 2020 11:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35743 * 117.00189 * 2 1 4 4 C 1.39213 * 120.81482 * 0.02562 * 3 2 1 5 5 C 1.38314 * 119.29120 * 179.97438 * 4 3 2 6 6 N 1.31618 * 120.97054 * 0.02562 * 5 4 3 7 7 C 1.32802 * 121.77923 * 359.69850 * 6 5 4 8 8 C 1.48180 * 119.69916 * 180.29612 * 7 6 5 9 9 O 1.21508 * 120.00162 * 180.29033 * 8 7 6 10 10 N 1.34783 * 119.99913 * 0.28883 * 8 7 6 11 11 C 1.46494 * 120.00028 * 180.02562 * 10 8 7 12 12 C 1.50699 * 109.47003 * 179.97438 * 11 10 8 13 13 O 1.21288 * 120.00267 * 359.97438 * 12 11 10 14 14 N 1.34782 * 120.00072 * 180.02562 * 12 11 10 15 15 C 1.37091 * 120.00111 * 179.97438 * 14 12 11 16 16 H 1.07997 * 120.00339 * 0.02562 * 15 14 12 17 17 C 1.38955 * 120.00111 * 179.97438 * 15 14 12 18 18 N 1.31410 * 119.99655 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00149 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47289 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.47250 * 120.00054 * 19 17 15 22 22 H 1.48502 * 109.46943 * 240.00194 * 19 17 15 23 23 C 1.39102 * 120.60316 * 0.58809 * 7 6 5 24 24 H 1.08997 * 109.47201 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47002 * 299.99956 * 1 2 3 26 26 H 1.08999 * 109.47110 * 59.99685 * 1 2 3 27 27 H 1.08004 * 120.35270 * 359.95559 * 4 3 2 28 28 H 1.07994 * 119.51333 * 179.97438 * 5 4 3 29 29 H 0.97006 * 119.99571 * 359.97438 * 10 8 7 30 30 H 1.08995 * 109.47448 * 299.99919 * 11 10 8 31 31 H 1.09005 * 109.46925 * 59.99867 * 11 10 8 32 32 H 0.97002 * 119.99600 * 0.02562 * 14 12 11 33 33 H 0.97007 * 120.00012 * 179.97438 * 18 17 15 34 34 H 1.08002 * 120.51064 * 179.70864 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2095 0.0000 4 6 1.3038 2.3877 0.0005 5 6 1.9643 3.6029 0.0011 6 7 3.2793 3.6591 0.0006 7 6 4.0262 2.5610 0.0055 8 6 5.5034 2.6779 0.0113 9 8 6.1921 1.6769 0.0105 10 7 6.0831 3.8947 0.0175 11 6 7.5434 4.0104 0.0227 12 6 7.9320 5.4664 0.0285 13 8 7.0735 6.3232 0.0278 14 7 9.2335 5.8165 0.0333 15 6 9.5870 7.1411 0.0381 16 1 8.8227 7.9040 0.0383 17 6 10.9289 7.5021 0.0436 18 7 11.8589 6.5738 0.0449 19 14 11.4105 9.3069 0.0508 20 1 10.1855 10.1462 0.0487 21 1 12.2105 9.6009 1.2668 22 1 12.2185 9.6083 -1.1582 23 6 3.4346 1.3021 -0.0009 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 0.2243 2.3532 0.0002 28 1 1.3927 4.5192 0.0011 29 1 5.5332 4.6939 0.0177 30 1 7.9433 3.5237 0.9122 31 1 7.9491 3.5299 -0.8677 32 1 9.9201 5.1313 0.0328 33 1 12.7957 6.8257 0.0484 34 1 4.0435 0.4101 -0.0016 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588077235.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:26 Heat of formation + Delta-G solvation = -97.486378 kcal Electronic energy + Delta-G solvation = -20292.007231 eV Core-core repulsion = 16803.476647 eV Total energy + Delta-G solvation = -3488.530585 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.95108 -40.82769 -39.93871 -39.00635 -36.28545 -35.40420 -33.38849 -32.72886 -32.58175 -29.49928 -28.47267 -26.65823 -24.83799 -24.45233 -21.82321 -21.39552 -20.19716 -19.77192 -18.49543 -17.78757 -17.35005 -17.01238 -16.87424 -16.71781 -16.63359 -16.33899 -15.83922 -15.66831 -15.45875 -15.00337 -14.77219 -14.48608 -13.97589 -13.58140 -13.55135 -13.39314 -12.91135 -12.53774 -12.44195 -12.32244 -12.10549 -11.57920 -11.53524 -10.72532 -10.55955 -10.47459 -10.20471 -10.08290 -10.00166 -8.50785 -6.00832 -0.50204 0.19710 1.35483 1.43277 1.57323 1.58679 1.72359 1.90260 2.20901 2.33778 2.76634 3.02795 3.13684 3.16184 3.57249 3.77858 3.94861 4.08233 4.23806 4.34716 4.39923 4.40099 4.40242 4.47639 4.69324 4.77218 4.90898 5.16757 5.33477 5.39121 5.91713 6.13795 6.30948 6.48948 6.76150 6.99852 7.04173 7.43654 7.94658 8.66420 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.051823 B = 0.002839 C = 0.002697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.169902 B = 9859.043052 C =10378.752974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.325 6.325 3 C 0.160 3.840 4 C -0.222 4.222 5 C 0.133 3.867 6 N -0.504 5.504 7 C 0.099 3.901 8 C 0.568 3.432 9 O -0.564 6.564 10 N -0.688 5.688 11 C 0.117 3.883 12 C 0.432 3.568 13 O -0.622 6.622 14 N -0.558 5.558 15 C -0.336 4.336 16 H 0.086 0.914 17 C -0.011 4.011 18 N -0.916 5.916 19 Si 0.998 3.002 20 H -0.270 1.270 21 H -0.271 1.271 22 H -0.271 1.271 23 C -0.155 4.155 24 H 0.122 0.878 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.186 0.814 28 H 0.200 0.800 29 H 0.420 0.580 30 H 0.101 0.899 31 H 0.101 0.899 32 H 0.400 0.600 33 H 0.280 0.720 34 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.567 -11.102 -0.079 25.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.236 6.236 3 C 0.106 3.894 4 C -0.242 4.242 5 C -0.025 4.025 6 N -0.220 5.220 7 C -0.037 4.037 8 C 0.353 3.647 9 O -0.443 6.443 10 N -0.340 5.340 11 C -0.010 4.010 12 C 0.219 3.781 13 O -0.510 6.510 14 N -0.194 5.194 15 C -0.465 4.465 16 H 0.104 0.896 17 C -0.212 4.212 18 N -0.556 5.556 19 Si 0.821 3.179 20 H -0.195 1.195 21 H -0.196 1.196 22 H -0.196 1.196 23 C -0.178 4.178 24 H 0.140 0.860 25 H 0.094 0.906 26 H 0.094 0.906 27 H 0.204 0.796 28 H 0.217 0.783 29 H 0.260 0.740 30 H 0.119 0.881 31 H 0.119 0.881 32 H 0.234 0.766 33 H 0.089 0.911 34 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -21.883 -10.646 -0.080 24.335 hybrid contribution 0.197 0.018 0.001 0.197 sum -21.686 -10.628 -0.079 24.151 Atomic orbital electron populations 1.23560 0.75011 1.06393 1.03238 1.86092 1.24616 1.25405 1.87488 1.19211 0.91383 0.86152 0.92646 1.22812 1.03677 0.91609 1.06135 1.23272 0.88523 0.99313 0.91442 1.67632 1.09270 1.31059 1.14022 1.20539 0.92845 0.89719 1.00627 1.18138 0.87114 0.82884 0.76521 1.90747 1.64351 1.37127 1.52079 1.45579 1.07056 1.09284 1.72124 1.20916 0.81584 0.93658 1.04848 1.20366 0.83219 0.90781 0.83705 1.90491 1.49987 1.52685 1.57833 1.41830 1.05714 1.08407 1.63452 1.19774 0.92663 0.83804 1.50286 0.89630 1.26146 0.94777 1.04487 0.95789 1.69688 1.01539 1.35043 1.49341 0.84797 0.78214 0.76536 0.78332 1.19468 1.19574 1.19580 1.21350 0.93498 0.98694 1.04220 0.85965 0.90618 0.90624 0.79645 0.78297 0.74029 0.88082 0.88097 0.76611 0.91050 0.83581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.07 9.84 113.37 1.12 1.18 16 2 O -0.32 -5.38 10.51 -90.68 -0.95 -6.34 16 3 C 0.16 3.12 6.73 22.75 0.15 3.27 16 4 C -0.22 -3.09 9.12 22.52 0.21 -2.88 16 5 C 0.13 2.38 11.17 84.74 0.95 3.32 16 6 N -0.50 -13.75 9.54 -185.14 -1.77 -15.51 16 7 C 0.10 2.98 6.75 41.85 0.28 3.26 16 8 C 0.57 20.29 7.81 86.88 0.68 20.97 16 9 O -0.56 -22.22 16.32 -3.74 -0.06 -22.28 16 10 N -0.69 -25.71 5.52 -469.39 -2.59 -28.30 16 11 C 0.12 4.53 6.15 85.63 0.53 5.06 16 12 C 0.43 20.76 7.85 87.66 0.69 21.45 16 13 O -0.62 -33.68 15.24 -3.05 -0.05 -33.73 16 14 N -0.56 -28.68 5.29 -306.99 -1.62 -30.30 16 15 C -0.34 -18.83 9.68 84.04 0.81 -18.02 16 16 H 0.09 5.07 7.16 -2.91 -0.02 5.05 16 17 C -0.01 -0.60 5.50 84.93 0.47 -0.14 16 18 N -0.92 -49.16 13.05 21.66 0.28 -48.88 16 19 Si 1.00 42.29 29.55 68.60 2.03 44.31 16 20 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 21 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 22 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 23 C -0.16 -4.04 9.60 22.72 0.22 -3.83 16 24 H 0.12 0.32 8.14 -2.39 -0.02 0.30 16 25 H 0.08 0.24 7.71 -2.39 -0.02 0.22 16 26 H 0.08 0.24 7.71 -2.39 -0.02 0.22 16 27 H 0.19 0.93 6.45 -2.91 -0.02 0.91 16 28 H 0.20 2.05 8.06 -2.91 -0.02 2.03 16 29 H 0.42 16.33 6.76 -92.70 -0.63 15.70 16 30 H 0.10 3.64 8.14 -2.39 -0.02 3.62 16 31 H 0.10 3.64 8.14 -2.38 -0.02 3.62 16 32 H 0.40 19.59 7.90 -92.71 -0.73 18.86 16 33 H 0.28 13.99 8.31 -92.70 -0.77 13.22 16 34 H 0.15 3.94 7.64 -2.91 -0.02 3.92 16 Total: -1.00 -72.25 308.65 1.18 -71.07 By element: Atomic # 1 Polarization: 36.49 SS G_CDS: -0.19 Total: 36.30 kcal Atomic # 6 Polarization: 27.56 SS G_CDS: 6.10 Total: 33.65 kcal Atomic # 7 Polarization: -117.30 SS G_CDS: -5.70 Total: -122.99 kcal Atomic # 8 Polarization: -61.28 SS G_CDS: -1.06 Total: -62.34 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.31 kcal Total: -72.25 1.18 -71.07 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588077235.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.414 kcal (2) G-P(sol) polarization free energy of solvation -72.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds