Wall clock time and date at job start Wed Apr 15 2020 11:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35675 * 116.99893 * 2 1 4 4 C 1.39285 * 119.61434 * 179.97438 * 3 2 1 5 5 C 1.38337 * 119.30619 * 180.02562 * 4 3 2 6 6 C 1.38783 * 118.55483 * 0.02562 * 5 4 3 7 7 C 1.39132 * 119.19160 * 359.97438 * 6 5 4 8 8 C 1.48148 * 119.69147 * 180.02562 * 7 6 5 9 9 O 1.21512 * 119.99859 * 359.97438 * 8 7 6 10 10 N 1.34778 * 119.99985 * 180.02562 * 8 7 6 11 11 C 1.46498 * 120.00056 * 179.97438 * 10 8 7 12 12 C 1.50704 * 109.46915 * 179.97438 * 11 10 8 13 13 O 1.21285 * 119.99956 * 0.02562 * 12 11 10 14 14 N 1.34778 * 119.99643 * 180.02562 * 12 11 10 15 15 C 1.37102 * 119.99994 * 180.02562 * 14 12 11 16 16 H 1.08003 * 119.99904 * 0.02562 * 15 14 12 17 17 C 1.38948 * 120.00005 * 179.97438 * 15 14 12 18 18 N 1.31407 * 120.00237 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99891 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47047 * 59.99950 * 19 17 15 21 21 H 1.48497 * 109.47003 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47251 * 300.00231 * 19 17 15 23 23 N 1.31899 * 119.61523 * 359.72954 * 3 2 1 24 24 H 1.08999 * 109.47144 * 59.99732 * 1 2 3 25 25 H 1.08996 * 109.46732 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47043 * 300.00133 * 1 2 3 27 27 H 1.08003 * 120.35047 * 359.97438 * 4 3 2 28 28 H 1.07990 * 120.72107 * 180.02562 * 5 4 3 29 29 H 1.08003 * 120.40443 * 179.97438 * 6 5 4 30 30 H 0.97008 * 119.99878 * 359.97438 * 10 8 7 31 31 H 1.08996 * 109.47202 * 299.99436 * 11 10 8 32 32 H 1.09001 * 109.46891 * 60.00167 * 11 10 8 33 33 H 0.96996 * 120.00127 * 0.02562 * 14 12 11 34 34 H 0.97001 * 120.00258 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 3.4363 1.2724 0.0005 5 6 4.0577 2.5084 0.0011 6 6 3.2666 3.6486 0.0016 7 6 1.8818 3.5138 0.0010 8 6 1.0267 4.7235 0.0010 9 8 1.5354 5.8271 0.0020 10 7 -0.3154 4.6001 0.0010 11 6 -1.1610 5.7964 0.0015 12 6 -2.6112 5.3864 0.0007 13 8 -2.9090 4.2107 0.0003 14 7 -3.5772 6.3264 0.0005 15 6 -4.8965 5.9535 0.0003 16 1 -5.1618 4.9065 0.0008 17 6 -5.8924 6.9225 0.0007 18 7 -5.5697 8.1963 0.0006 19 14 -7.6899 6.4144 -0.0003 20 1 -7.9762 5.6052 1.2115 21 1 -8.5470 7.6270 -0.0004 22 1 -7.9755 5.6069 -1.2135 23 7 1.3191 2.3102 -0.0054 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 4.0240 0.3663 0.0014 28 1 5.1349 2.5843 0.0011 29 1 3.7203 4.6287 0.0024 30 1 -0.7215 3.7191 0.0006 31 1 -0.9512 6.3892 0.8918 32 1 -0.9512 6.3901 -0.8882 33 1 -3.3390 7.2666 0.0005 34 1 -6.2649 8.8728 0.0005 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000804821161.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:31 Heat of formation + Delta-G solvation = -71.304709 kcal Electronic energy + Delta-G solvation = -20665.757749 eV Core-core repulsion = 17178.362487 eV Total energy + Delta-G solvation = -3487.395262 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.97001 -39.44149 -38.25844 -37.61699 -34.54029 -33.78356 -32.75227 -31.39237 -31.02154 -28.05304 -27.31399 -25.01577 -23.91738 -23.03313 -20.72664 -19.66964 -18.67574 -18.02399 -17.80075 -16.26744 -16.21482 -16.18757 -15.69977 -15.32813 -15.24141 -14.57462 -14.27828 -14.12406 -14.08949 -13.71209 -13.28326 -13.21482 -12.43798 -12.20516 -11.97910 -11.88328 -11.63742 -11.28524 -11.10865 -10.52365 -10.49416 -10.31193 -10.20948 -9.69822 -9.63178 -8.91637 -8.68947 -8.63939 -8.10711 -6.51913 -3.93981 0.49506 1.04961 2.75461 2.88284 3.13437 3.15694 3.21456 3.26766 3.70760 3.76727 3.95150 4.11450 4.66075 4.78098 4.79378 4.86734 5.06551 5.16313 5.22059 5.26854 5.31130 5.63322 5.69831 5.83850 5.91852 5.92292 6.05314 6.10184 6.60153 6.98698 7.41869 7.45383 7.81612 7.90841 8.32379 8.44945 9.03949 9.38335 9.86443 10.64924 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.026993 B = 0.003551 C = 0.003146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.056804 B = 7882.279107 C = 8898.888913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.308 6.308 3 C 0.321 3.679 4 C -0.171 4.171 5 C -0.049 4.049 6 C -0.150 4.150 7 C 0.127 3.873 8 C 0.566 3.434 9 O -0.539 6.539 10 N -0.684 5.684 11 C 0.106 3.894 12 C 0.428 3.572 13 O -0.594 6.594 14 N -0.548 5.548 15 C -0.306 4.306 16 H 0.105 0.895 17 C 0.026 3.974 18 N -0.895 5.895 19 Si 0.934 3.066 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.272 1.272 23 N -0.513 5.513 24 H 0.064 0.936 25 H 0.097 0.903 26 H 0.064 0.936 27 H 0.146 0.854 28 H 0.149 0.851 29 H 0.152 0.848 30 H 0.421 0.579 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.396 0.604 34 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.220 -10.584 0.015 19.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.215 6.215 3 C 0.139 3.861 4 C -0.192 4.192 5 C -0.074 4.074 6 C -0.171 4.171 7 C -0.010 4.010 8 C 0.349 3.651 9 O -0.416 6.416 10 N -0.337 5.337 11 C -0.022 4.022 12 C 0.213 3.787 13 O -0.481 6.481 14 N -0.183 5.183 15 C -0.435 4.435 16 H 0.123 0.877 17 C -0.177 4.177 18 N -0.535 5.535 19 Si 0.760 3.240 20 H -0.198 1.198 21 H -0.208 1.208 22 H -0.198 1.198 23 N -0.240 5.240 24 H 0.083 0.917 25 H 0.116 0.884 26 H 0.083 0.917 27 H 0.163 0.837 28 H 0.167 0.833 29 H 0.170 0.830 30 H 0.261 0.739 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.230 0.770 34 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 15.354 -10.697 0.007 18.713 hybrid contribution -0.402 0.154 0.001 0.431 sum 14.952 -10.543 0.009 18.295 Atomic orbital electron populations 1.22962 0.76359 1.03251 1.03338 1.86225 1.23538 1.24014 1.87743 1.19796 0.89381 0.84541 0.92356 1.21285 0.91962 0.99873 1.06037 1.21434 1.00839 0.90805 0.94338 1.21991 0.92946 1.00907 1.01301 1.20821 0.92176 0.90163 0.97856 1.17809 0.82257 0.87362 0.77641 1.90778 1.74103 1.25710 1.51026 1.45592 1.04913 1.11671 1.71554 1.21053 0.90017 0.87583 1.03536 1.19698 0.86357 0.86890 0.85737 1.90504 1.82736 1.17659 1.57184 1.41777 1.05638 1.08245 1.62661 1.19686 0.80491 0.94954 1.48378 0.87713 1.25320 1.00838 0.94746 0.96759 1.69603 1.34958 0.99701 1.49239 0.85870 0.81115 0.77808 0.79164 1.19766 1.20850 1.19770 1.67222 1.41019 0.98258 1.17466 0.91740 0.88431 0.91745 0.83652 0.83327 0.83046 0.73944 0.89471 0.89479 0.77017 0.91523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.38 10.38 101.05 1.05 1.43 16 2 O -0.31 -3.66 10.48 -18.73 -0.20 -3.86 16 3 C 0.32 3.99 7.49 -17.13 -0.13 3.86 16 4 C -0.17 -1.62 10.05 -39.16 -0.39 -2.01 16 5 C -0.05 -0.42 10.16 -39.34 -0.40 -0.82 16 6 C -0.15 -1.71 9.63 -39.05 -0.38 -2.08 16 7 C 0.13 1.83 6.75 -83.02 -0.56 1.27 16 8 C 0.57 9.58 7.81 -12.19 -0.10 9.49 16 9 O -0.54 -10.01 16.32 5.36 0.09 -9.92 16 10 N -0.68 -12.28 5.52 -62.33 -0.34 -12.62 16 11 C 0.11 1.98 6.15 -5.19 -0.03 1.95 16 12 C 0.43 9.90 7.85 -10.98 -0.09 9.81 16 13 O -0.59 -15.38 15.24 5.55 0.08 -15.29 16 14 N -0.55 -13.60 5.29 -10.96 -0.06 -13.66 16 15 C -0.31 -8.31 9.68 -14.93 -0.14 -8.45 16 16 H 0.11 2.96 7.16 -52.48 -0.38 2.58 16 17 C 0.03 0.69 5.50 -17.47 -0.10 0.59 16 18 N -0.89 -23.85 13.05 55.50 0.72 -23.12 16 19 Si 0.93 20.52 29.55 -169.99 -5.02 15.49 16 20 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 21 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 22 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 23 N -0.51 -7.35 8.39 -9.87 -0.08 -7.43 16 24 H 0.06 0.74 8.10 -51.93 -0.42 0.32 16 25 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.06 0.74 8.11 -51.93 -0.42 0.32 16 27 H 0.15 0.99 8.06 -52.48 -0.42 0.57 16 28 H 0.15 0.72 8.06 -52.49 -0.42 0.30 16 29 H 0.15 1.59 7.63 -52.48 -0.40 1.19 16 30 H 0.42 7.81 6.76 -40.82 -0.28 7.54 16 31 H 0.09 1.54 8.14 -51.93 -0.42 1.11 16 32 H 0.09 1.54 8.14 -51.93 -0.42 1.11 16 33 H 0.40 9.41 7.90 -40.82 -0.32 9.09 16 34 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 311.10 15.07 4.69 4.69 Total: -1.00 -31.54 311.10 -4.85 -36.38 By element: Atomic # 1 Polarization: 17.78 SS G_CDS: -3.46 Total: 14.31 kcal Atomic # 6 Polarization: 16.31 SS G_CDS: -1.26 Total: 15.04 kcal Atomic # 7 Polarization: -57.08 SS G_CDS: 0.24 Total: -56.84 kcal Atomic # 8 Polarization: -29.05 SS G_CDS: -0.02 Total: -29.08 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -31.54 -4.85 -36.38 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000804821161.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.922 kcal (2) G-P(sol) polarization free energy of solvation -31.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds