Wall clock time and date at job start Wed Apr 15 2020 11:43:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35675 * 116.99893 * 2 1 4 4 C 1.39285 * 119.61434 * 179.97438 * 3 2 1 5 5 C 1.38337 * 119.30619 * 180.02562 * 4 3 2 6 6 C 1.38783 * 118.55483 * 0.02562 * 5 4 3 7 7 C 1.39132 * 119.19160 * 359.97438 * 6 5 4 8 8 C 1.48148 * 119.69147 * 180.02562 * 7 6 5 9 9 O 1.21512 * 119.99859 * 359.97438 * 8 7 6 10 10 N 1.34778 * 119.99985 * 180.02562 * 8 7 6 11 11 C 1.46498 * 120.00056 * 179.97438 * 10 8 7 12 12 C 1.50704 * 109.46915 * 179.97438 * 11 10 8 13 13 O 1.21285 * 119.99956 * 0.02562 * 12 11 10 14 14 N 1.34778 * 119.99643 * 180.02562 * 12 11 10 15 15 C 1.37102 * 119.99994 * 180.02562 * 14 12 11 16 16 H 1.08003 * 119.99904 * 0.02562 * 15 14 12 17 17 C 1.38948 * 120.00005 * 179.97438 * 15 14 12 18 18 N 1.31407 * 120.00237 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99891 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47047 * 59.99950 * 19 17 15 21 21 H 1.48497 * 109.47003 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47251 * 300.00231 * 19 17 15 23 23 N 1.31899 * 119.61523 * 359.72954 * 3 2 1 24 24 H 1.08999 * 109.47144 * 59.99732 * 1 2 3 25 25 H 1.08996 * 109.46732 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47043 * 300.00133 * 1 2 3 27 27 H 1.08003 * 120.35047 * 359.97438 * 4 3 2 28 28 H 1.07990 * 120.72107 * 180.02562 * 5 4 3 29 29 H 1.08003 * 120.40443 * 179.97438 * 6 5 4 30 30 H 0.97008 * 119.99878 * 359.97438 * 10 8 7 31 31 H 1.08996 * 109.47202 * 299.99436 * 11 10 8 32 32 H 1.09001 * 109.46891 * 60.00167 * 11 10 8 33 33 H 0.96996 * 120.00127 * 0.02562 * 14 12 11 34 34 H 0.97001 * 120.00258 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 3.4363 1.2724 0.0005 5 6 4.0577 2.5084 0.0011 6 6 3.2666 3.6486 0.0016 7 6 1.8818 3.5138 0.0010 8 6 1.0267 4.7235 0.0010 9 8 1.5354 5.8271 0.0020 10 7 -0.3154 4.6001 0.0010 11 6 -1.1610 5.7964 0.0015 12 6 -2.6112 5.3864 0.0007 13 8 -2.9090 4.2107 0.0003 14 7 -3.5772 6.3264 0.0005 15 6 -4.8965 5.9535 0.0003 16 1 -5.1618 4.9065 0.0008 17 6 -5.8924 6.9225 0.0007 18 7 -5.5697 8.1963 0.0006 19 14 -7.6899 6.4144 -0.0003 20 1 -7.9762 5.6052 1.2115 21 1 -8.5470 7.6270 -0.0004 22 1 -7.9755 5.6069 -1.2135 23 7 1.3191 2.3102 -0.0054 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 4.0240 0.3663 0.0014 28 1 5.1349 2.5843 0.0011 29 1 3.7203 4.6287 0.0024 30 1 -0.7215 3.7191 0.0006 31 1 -0.9512 6.3892 0.8918 32 1 -0.9512 6.3901 -0.8882 33 1 -3.3390 7.2666 0.0005 34 1 -6.2649 8.8728 0.0005 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000804821161.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:30 Heat of formation + Delta-G solvation = -97.020689 kcal Electronic energy + Delta-G solvation = -20666.872878 eV Core-core repulsion = 17178.362487 eV Total energy + Delta-G solvation = -3488.510391 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.94782 -40.80739 -39.91952 -38.64271 -36.30487 -35.44891 -33.69222 -33.37198 -31.96487 -29.54427 -28.29007 -26.70236 -25.16507 -23.90820 -21.96639 -21.42097 -20.20229 -19.65831 -18.88583 -17.57233 -17.25512 -17.18667 -17.00357 -16.74896 -16.69902 -16.33661 -15.78402 -15.61828 -15.18246 -15.05971 -14.33896 -14.30825 -13.96579 -13.59486 -13.55541 -13.21986 -12.91460 -12.71852 -12.48620 -12.20956 -12.14517 -11.72185 -11.58179 -11.03030 -10.75267 -10.58143 -10.32094 -10.11056 -9.63656 -8.52362 -6.02830 -0.44435 0.23076 1.36847 1.41809 1.52717 1.59834 1.85553 1.88446 2.06423 2.29227 2.75774 2.91391 3.08278 3.14539 3.77956 3.91932 4.02366 4.18278 4.24975 4.36005 4.37585 4.40382 4.43121 4.49344 4.78582 4.93524 5.09145 5.15217 5.34832 5.36617 5.89252 6.08021 6.28346 6.46632 6.63136 6.96753 7.01880 7.41386 7.92318 8.64304 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.026993 B = 0.003551 C = 0.003146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.056804 B = 7882.279107 C = 8898.888913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.311 6.311 3 C 0.297 3.703 4 C -0.153 4.153 5 C -0.033 4.033 6 C -0.143 4.143 7 C 0.092 3.908 8 C 0.567 3.433 9 O -0.560 6.560 10 N -0.692 5.692 11 C 0.118 3.882 12 C 0.430 3.570 13 O -0.624 6.624 14 N -0.556 5.556 15 C -0.340 4.340 16 H 0.086 0.914 17 C -0.009 4.009 18 N -0.915 5.915 19 Si 0.997 3.003 20 H -0.270 1.270 21 H -0.271 1.271 22 H -0.270 1.270 23 N -0.539 5.539 24 H 0.049 0.951 25 H 0.126 0.874 26 H 0.049 0.951 27 H 0.180 0.820 28 H 0.197 0.803 29 H 0.159 0.841 30 H 0.417 0.583 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.400 0.600 34 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.917 -11.410 0.017 21.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.218 6.218 3 C 0.115 3.885 4 C -0.174 4.174 5 C -0.057 4.057 6 C -0.165 4.165 7 C -0.043 4.043 8 C 0.353 3.647 9 O -0.439 6.439 10 N -0.345 5.345 11 C -0.010 4.010 12 C 0.217 3.783 13 O -0.512 6.512 14 N -0.192 5.192 15 C -0.469 4.469 16 H 0.104 0.896 17 C -0.210 4.210 18 N -0.555 5.555 19 Si 0.820 3.180 20 H -0.195 1.195 21 H -0.195 1.195 22 H -0.195 1.195 23 N -0.266 5.266 24 H 0.068 0.932 25 H 0.145 0.855 26 H 0.068 0.932 27 H 0.197 0.803 28 H 0.214 0.786 29 H 0.177 0.823 30 H 0.256 0.744 31 H 0.119 0.881 32 H 0.119 0.881 33 H 0.234 0.766 34 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 17.076 -11.503 0.009 20.589 hybrid contribution -0.808 0.345 0.000 0.878 sum 16.268 -11.158 0.010 19.727 Atomic orbital electron populations 1.23001 0.76212 1.04690 1.01890 1.86225 1.23720 1.23922 1.87934 1.20269 0.90727 0.84118 0.93390 1.21770 0.90714 1.01688 1.03210 1.21951 1.02779 0.89080 0.91920 1.22230 0.91768 1.02539 0.99935 1.20553 0.92954 0.89231 1.01575 1.18232 0.81797 0.88253 0.76411 1.90747 1.74292 1.26787 1.52062 1.45637 1.05478 1.10965 1.72375 1.20909 0.87028 0.88216 1.04805 1.20382 0.87866 0.86191 0.83822 1.90479 1.83729 1.18978 1.57984 1.41811 1.05432 1.08640 1.63310 1.19711 0.82019 0.94518 1.50640 0.89632 1.26126 1.04591 0.94603 0.95659 1.69669 1.36384 1.00381 1.49058 0.84929 0.76102 0.77851 0.79113 1.19479 1.19508 1.19492 1.67039 1.42339 0.98812 1.18401 0.93197 0.85544 0.93191 0.80301 0.78554 0.82304 0.74425 0.88103 0.88117 0.76604 0.90988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.80 10.38 113.37 1.18 1.98 16 2 O -0.31 -7.11 10.48 -89.92 -0.94 -8.05 16 3 C 0.30 7.03 7.49 84.93 0.64 7.66 16 4 C -0.15 -2.38 10.05 22.55 0.23 -2.15 16 5 C -0.03 -0.42 10.16 22.42 0.23 -0.20 16 6 C -0.14 -2.96 9.63 22.61 0.22 -2.74 16 7 C 0.09 2.64 6.75 41.84 0.28 2.92 16 8 C 0.57 19.44 7.81 86.88 0.68 20.12 16 9 O -0.56 -20.79 16.32 -3.75 -0.06 -20.85 16 10 N -0.69 -25.47 5.52 -469.42 -2.59 -28.05 16 11 C 0.12 4.48 6.15 85.63 0.53 5.00 16 12 C 0.43 20.47 7.85 87.66 0.69 21.15 16 13 O -0.62 -33.40 15.24 -3.05 -0.05 -33.44 16 14 N -0.56 -28.30 5.29 -306.98 -1.62 -29.93 16 15 C -0.34 -18.90 9.68 84.04 0.81 -18.08 16 16 H 0.09 5.00 7.16 -2.91 -0.02 4.98 16 17 C -0.01 -0.47 5.50 84.93 0.47 0.00 16 18 N -0.92 -48.73 13.05 21.66 0.28 -48.44 16 19 Si 1.00 41.90 29.55 68.60 2.03 43.93 16 20 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 21 H -0.27 -10.74 7.11 99.48 0.71 -10.04 16 22 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 23 N -0.54 -15.50 8.39 -298.19 -2.50 -18.00 16 24 H 0.05 1.20 8.10 -2.39 -0.02 1.18 16 25 H 0.13 1.90 8.14 -2.39 -0.02 1.88 16 26 H 0.05 1.20 8.11 -2.39 -0.02 1.18 16 27 H 0.18 1.56 8.06 -2.91 -0.02 1.54 16 28 H 0.20 0.71 8.06 -2.92 -0.02 0.69 16 29 H 0.16 3.00 7.63 -2.91 -0.02 2.98 16 30 H 0.42 16.16 6.76 -92.70 -0.63 15.53 16 31 H 0.10 3.57 8.14 -2.39 -0.02 3.55 16 32 H 0.10 3.56 8.14 -2.39 -0.02 3.54 16 33 H 0.40 19.40 7.90 -92.71 -0.73 18.66 16 34 H 0.28 13.98 8.31 -92.71 -0.77 13.21 16 Total: -1.00 -69.49 311.10 0.29 -69.20 By element: Atomic # 1 Polarization: 38.16 SS G_CDS: -0.20 Total: 37.97 kcal Atomic # 6 Polarization: 29.72 SS G_CDS: 5.94 Total: 35.66 kcal Atomic # 7 Polarization: -117.99 SS G_CDS: -6.43 Total: -124.42 kcal Atomic # 8 Polarization: -61.29 SS G_CDS: -1.05 Total: -62.34 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 2.03 Total: 43.93 kcal Total: -69.49 0.29 -69.20 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000804821161.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.819 kcal (2) G-P(sol) polarization free energy of solvation -69.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds