Wall clock time and date at job start Wed Apr 15 2020 11:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34622 * 116.99364 * 2 1 4 4 O 1.21330 * 120.00671 * 0.02562 * 3 2 1 5 5 C 1.48747 * 119.99665 * 180.02562 * 3 2 1 6 6 N 1.31132 * 119.35450 * 0.28997 * 5 3 2 7 7 C 1.34324 * 120.65700 * 180.28636 * 6 5 3 8 8 N 1.34334 * 120.30069 * 179.70850 * 7 6 5 9 9 C 1.32480 * 119.99832 * 359.72336 * 8 7 6 10 10 O 1.21673 * 120.00004 * 359.97438 * 9 8 7 11 11 C 1.50696 * 119.99519 * 180.02562 * 9 8 7 12 12 C 1.53002 * 109.46926 * 180.02562 * 11 9 8 13 13 C 1.50706 * 109.47308 * 179.97438 * 12 11 9 14 14 H 1.07999 * 119.99816 * 359.97438 * 13 12 11 15 15 C 1.37871 * 119.99983 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00130 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99939 * 179.97438 * 15 13 12 18 18 H 1.48495 * 109.47249 * 90.00311 * 17 15 13 19 19 H 1.48503 * 109.47232 * 210.00675 * 17 15 13 20 20 H 1.48504 * 109.47104 * 330.00564 * 17 15 13 21 21 C 1.41206 * 119.39524 * 359.43449 * 7 6 5 22 22 C 1.35860 * 118.79757 * 0.27311 * 21 7 6 23 23 N 1.35210 * 119.29808 * 0.02562 * 22 21 7 24 24 H 0.96999 * 119.71618 * 180.02562 * 23 22 21 25 25 H 1.09008 * 109.46737 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47317 * 299.99309 * 1 2 3 27 27 H 1.08997 * 109.47415 * 59.99738 * 1 2 3 28 28 H 1.09004 * 109.47331 * 299.99565 * 11 9 8 29 29 H 1.08996 * 109.47718 * 59.99439 * 11 9 8 30 30 H 1.09000 * 109.46986 * 299.99444 * 12 11 9 31 31 H 1.08996 * 109.47407 * 59.99215 * 12 11 9 32 32 H 0.97005 * 120.00027 * 179.97438 * 16 15 13 33 33 H 1.08005 * 120.60711 * 180.25461 * 21 7 6 34 34 H 1.07998 * 120.35555 * 180.02562 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0630 1.1996 0.0000 4 8 1.4022 2.2171 0.0005 5 6 3.5484 1.2775 -0.0006 6 7 4.2503 0.1698 -0.0069 7 6 5.5929 0.2096 -0.0018 8 7 6.3048 -0.9296 -0.0024 9 6 5.6828 -2.0993 -0.0025 10 8 4.4668 -2.1417 -0.0015 11 6 6.4814 -3.3773 -0.0026 12 6 5.5284 -4.5742 -0.0033 13 6 6.3270 -5.8523 -0.0040 14 1 7.4063 -5.8146 -0.0044 15 6 5.6797 -7.0696 -0.0043 16 7 4.3654 -7.1155 -0.0043 17 14 6.6696 -8.6537 -0.0059 18 1 6.9328 -9.0744 1.3937 19 1 5.9032 -9.7156 -0.7061 20 1 7.9597 -8.4306 -0.7066 21 6 6.2492 1.4599 -0.0017 22 6 5.4992 2.5927 -0.0011 23 7 4.1508 2.4935 -0.0001 24 1 3.6094 3.2984 0.0000 25 1 -0.3633 -1.0278 -0.0005 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 7.1097 -3.4131 -0.8926 29 1 7.1098 -3.4132 0.8873 30 1 4.8998 -4.5387 0.8865 31 1 4.9003 -4.5381 -0.8934 32 1 3.9099 -7.9720 -0.0049 33 1 7.3279 1.5147 -0.0017 34 1 5.9750 3.5623 -0.0014 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001531633308.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:14 Heat of formation + Delta-G solvation = -25.786427 kcal Electronic energy + Delta-G solvation = -20812.134686 eV Core-core repulsion = 17326.713245 eV Total energy + Delta-G solvation = -3485.421441 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.00381 -40.48870 -38.68393 -37.06031 -35.28078 -33.56670 -33.17937 -31.34242 -30.56141 -28.47877 -26.07964 -25.86445 -24.33951 -22.31601 -21.06210 -19.72312 -19.16110 -18.56274 -17.43957 -17.21655 -17.05941 -16.39787 -15.63670 -15.54940 -14.65812 -14.34134 -14.29415 -14.18933 -13.67575 -13.63613 -13.50979 -12.47359 -12.44511 -12.01391 -11.58150 -11.41211 -11.16961 -11.01248 -10.80980 -10.71278 -10.45925 -10.39280 -9.79768 -9.65176 -9.34110 -8.88589 -8.31502 -8.16781 -7.98187 -5.80308 -3.82971 -0.17494 0.63597 1.39106 1.81272 2.60874 3.02003 3.43928 3.48863 3.53157 3.55893 3.96425 4.24089 4.36378 4.49908 4.60230 4.80616 4.90691 4.92708 5.20042 5.33308 5.45766 5.54174 5.71674 5.83321 6.22933 6.62256 6.66724 6.81793 6.96384 7.30520 7.43755 7.93138 7.97672 8.11003 8.27524 8.60677 9.20215 9.28489 9.79211 11.30962 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.022039 B = 0.003878 C = 0.003308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.156677 B = 7217.565100 C = 8461.973597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.301 6.301 3 C 0.535 3.465 4 O -0.495 6.495 5 C 0.369 3.631 6 N -0.437 5.437 7 C 0.402 3.598 8 N -0.589 5.589 9 C 0.453 3.547 10 O -0.486 6.486 11 C -0.111 4.111 12 C 0.034 3.966 13 C -0.520 4.520 14 H 0.056 0.944 15 C 0.056 3.944 16 N -0.893 5.893 17 Si 0.891 3.109 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.274 1.274 21 C -0.194 4.194 22 C 0.132 3.868 23 N -0.586 5.586 24 H 0.430 0.570 25 H 0.115 0.885 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.020 0.980 31 H 0.020 0.980 32 H 0.258 0.742 33 H 0.170 0.830 34 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.490 27.071 0.015 27.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.212 6.212 3 C 0.374 3.626 4 O -0.382 6.382 5 C 0.093 3.907 6 N -0.165 5.165 7 C 0.140 3.860 8 N -0.332 5.332 9 C 0.240 3.760 10 O -0.360 6.360 11 C -0.150 4.150 12 C -0.003 4.003 13 C -0.558 4.558 14 H 0.074 0.926 15 C -0.145 4.145 16 N -0.532 5.532 17 Si 0.719 3.281 18 H -0.208 1.208 19 H -0.213 1.213 20 H -0.199 1.199 21 C -0.224 4.224 22 C 0.002 3.998 23 N -0.205 5.205 24 H 0.269 0.731 25 H 0.133 0.867 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.039 0.961 31 H 0.039 0.961 32 H 0.068 0.932 33 H 0.187 0.813 34 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -3.919 25.777 0.002 26.073 hybrid contribution -0.089 0.136 0.014 0.163 sum -4.008 25.913 0.016 26.221 Atomic orbital electron populations 1.23570 0.74435 1.05275 1.02680 1.86833 1.24074 1.29023 1.81273 1.20157 0.86067 0.82928 0.73442 1.90878 1.65543 1.36124 1.45680 1.21576 0.92619 0.82276 0.94188 1.70171 1.09564 1.22655 1.14114 1.20646 0.84434 0.94469 0.86412 1.70540 1.37226 0.97775 1.27610 1.22247 0.88299 0.89946 0.75480 1.90787 1.16411 1.90148 1.38670 1.21535 0.99626 0.91699 1.02183 1.18922 0.93722 0.89484 0.98194 1.21296 0.93020 0.91123 1.50400 0.92623 1.25024 0.94826 0.99066 0.95582 1.70017 1.07170 1.25096 1.50934 0.86610 0.80111 0.83372 0.77971 1.20765 1.21340 1.19884 1.21556 1.03029 0.89550 1.08224 1.22188 0.80979 1.01611 0.95044 1.41876 1.07719 1.09424 1.61461 0.73084 0.86667 0.91277 0.91282 0.90599 0.90594 0.96137 0.96130 0.93193 0.81257 0.79285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.56 101.05 1.07 1.37 16 2 O -0.30 -4.11 10.37 -40.28 -0.42 -4.53 16 3 C 0.53 6.29 8.00 35.08 0.28 6.57 16 4 O -0.50 -5.32 16.20 -19.13 -0.31 -5.63 16 5 C 0.37 4.32 7.68 -155.21 -1.19 3.13 16 6 N -0.44 -7.43 7.55 -10.13 -0.08 -7.51 16 7 C 0.40 6.59 7.38 -156.91 -1.16 5.43 16 8 N -0.59 -12.05 10.43 -12.07 -0.13 -12.17 16 9 C 0.45 11.08 7.70 -12.00 -0.09 10.99 16 10 O -0.49 -13.13 14.09 5.21 0.07 -13.05 16 11 C -0.11 -2.78 5.71 -27.88 -0.16 -2.94 16 12 C 0.03 1.03 4.26 -27.88 -0.12 0.91 16 13 C -0.52 -16.07 9.11 -34.44 -0.31 -16.38 16 14 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 15 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 16 N -0.89 -28.99 13.29 55.43 0.74 -28.26 16 17 Si 0.89 22.91 29.54 -169.99 -5.02 17.89 16 18 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 19 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 20 H -0.27 -6.84 7.11 56.52 0.40 -6.44 16 21 C -0.19 -1.83 10.04 -39.31 -0.39 -2.22 16 22 C 0.13 0.63 11.26 -16.92 -0.19 0.43 16 23 N -0.59 -3.64 5.26 -10.67 -0.06 -3.69 16 24 H 0.43 1.26 8.20 -40.82 -0.33 0.92 16 25 H 0.12 0.91 8.14 -51.92 -0.42 0.49 16 26 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.08 1.81 8.14 -51.93 -0.42 1.39 16 29 H 0.08 1.81 8.14 -51.93 -0.42 1.39 16 30 H 0.02 0.66 8.10 -51.93 -0.42 0.24 16 31 H 0.02 0.66 8.10 -51.93 -0.42 0.24 16 32 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 33 H 0.17 1.24 8.06 -52.48 -0.42 0.82 16 34 H 0.19 -0.17 8.06 -52.49 -0.42 -0.60 16 LS Contribution 312.48 15.07 4.71 4.71 Total: -1.00 -42.98 312.48 -6.53 -49.51 By element: Atomic # 1 Polarization: -2.51 SS G_CDS: -3.68 Total: -6.19 kcal Atomic # 6 Polarization: 11.30 SS G_CDS: -2.37 Total: 8.93 kcal Atomic # 7 Polarization: -52.11 SS G_CDS: 0.48 Total: -51.63 kcal Atomic # 8 Polarization: -22.56 SS G_CDS: -0.65 Total: -23.22 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -5.02 Total: 17.89 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -42.98 -6.53 -49.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001531633308.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.724 kcal (2) G-P(sol) polarization free energy of solvation -42.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds