Wall clock time and date at job start Wed Apr 15 2020 11:43:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34622 * 116.99364 * 2 1 4 4 O 1.21330 * 120.00671 * 0.02562 * 3 2 1 5 5 C 1.48747 * 119.99665 * 180.02562 * 3 2 1 6 6 N 1.31132 * 119.35450 * 0.28997 * 5 3 2 7 7 C 1.34324 * 120.65700 * 180.28636 * 6 5 3 8 8 N 1.34334 * 120.30069 * 179.70850 * 7 6 5 9 9 C 1.32480 * 119.99832 * 359.72336 * 8 7 6 10 10 O 1.21673 * 120.00004 * 359.97438 * 9 8 7 11 11 C 1.50696 * 119.99519 * 180.02562 * 9 8 7 12 12 C 1.53002 * 109.46926 * 180.02562 * 11 9 8 13 13 C 1.50706 * 109.47308 * 179.97438 * 12 11 9 14 14 H 1.07999 * 119.99816 * 359.97438 * 13 12 11 15 15 C 1.37871 * 119.99983 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00130 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99939 * 179.97438 * 15 13 12 18 18 H 1.48495 * 109.47249 * 90.00311 * 17 15 13 19 19 H 1.48503 * 109.47232 * 210.00675 * 17 15 13 20 20 H 1.48504 * 109.47104 * 330.00564 * 17 15 13 21 21 C 1.41206 * 119.39524 * 359.43449 * 7 6 5 22 22 C 1.35860 * 118.79757 * 0.27311 * 21 7 6 23 23 N 1.35210 * 119.29808 * 0.02562 * 22 21 7 24 24 H 0.96999 * 119.71618 * 180.02562 * 23 22 21 25 25 H 1.09008 * 109.46737 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47317 * 299.99309 * 1 2 3 27 27 H 1.08997 * 109.47415 * 59.99738 * 1 2 3 28 28 H 1.09004 * 109.47331 * 299.99565 * 11 9 8 29 29 H 1.08996 * 109.47718 * 59.99439 * 11 9 8 30 30 H 1.09000 * 109.46986 * 299.99444 * 12 11 9 31 31 H 1.08996 * 109.47407 * 59.99215 * 12 11 9 32 32 H 0.97005 * 120.00027 * 179.97438 * 16 15 13 33 33 H 1.08005 * 120.60711 * 180.25461 * 21 7 6 34 34 H 1.07998 * 120.35555 * 180.02562 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0630 1.1996 0.0000 4 8 1.4022 2.2171 0.0005 5 6 3.5484 1.2775 -0.0006 6 7 4.2503 0.1698 -0.0069 7 6 5.5929 0.2096 -0.0018 8 7 6.3048 -0.9296 -0.0024 9 6 5.6828 -2.0993 -0.0025 10 8 4.4668 -2.1417 -0.0015 11 6 6.4814 -3.3773 -0.0026 12 6 5.5284 -4.5742 -0.0033 13 6 6.3270 -5.8523 -0.0040 14 1 7.4063 -5.8146 -0.0044 15 6 5.6797 -7.0696 -0.0043 16 7 4.3654 -7.1155 -0.0043 17 14 6.6696 -8.6537 -0.0059 18 1 6.9328 -9.0744 1.3937 19 1 5.9032 -9.7156 -0.7061 20 1 7.9597 -8.4306 -0.7066 21 6 6.2492 1.4599 -0.0017 22 6 5.4992 2.5927 -0.0011 23 7 4.1508 2.4935 -0.0001 24 1 3.6094 3.2984 0.0000 25 1 -0.3633 -1.0278 -0.0005 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 7.1097 -3.4131 -0.8926 29 1 7.1098 -3.4132 0.8873 30 1 4.8998 -4.5387 0.8865 31 1 4.9003 -4.5381 -0.8934 32 1 3.9099 -7.9720 -0.0049 33 1 7.3279 1.5147 -0.0017 34 1 5.9750 3.5623 -0.0014 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001531633308.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:13 Heat of formation + Delta-G solvation = -60.790070 kcal Electronic energy + Delta-G solvation = -20813.652558 eV Core-core repulsion = 17326.713245 eV Total energy + Delta-G solvation = -3486.939313 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.96818 -41.45438 -40.17861 -38.03060 -36.48673 -35.46172 -34.54787 -32.99838 -32.26875 -29.29482 -28.01891 -26.79737 -25.73662 -23.64957 -22.68421 -20.69289 -20.41577 -19.58701 -18.89570 -18.23210 -18.15076 -17.98816 -17.22044 -16.62613 -16.43294 -15.98791 -15.82124 -15.28140 -14.77180 -14.47107 -14.42017 -14.21950 -14.15419 -13.33330 -13.18179 -12.93241 -12.68923 -12.49822 -12.44953 -12.02180 -11.86606 -11.66875 -11.60858 -11.49185 -11.35034 -11.06446 -10.56867 -9.87617 -9.17687 -8.17422 -6.32498 -1.20185 -0.20078 0.53592 0.86007 1.39774 1.44854 1.56197 1.82107 1.83446 2.42541 2.60631 2.94205 3.12990 3.13626 3.43514 3.73154 3.82877 4.08138 4.24880 4.44352 4.51494 4.61929 4.62130 4.63159 4.84885 4.98041 5.08827 5.44898 5.51561 5.64293 5.65296 5.83983 6.04265 6.19868 6.35421 6.67923 6.85069 7.36645 7.70941 8.95881 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.022039 B = 0.003878 C = 0.003308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.156677 B = 7217.565100 C = 8461.973597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.339 6.339 3 C 0.533 3.467 4 O -0.483 6.483 5 C 0.371 3.629 6 N -0.506 5.506 7 C 0.399 3.601 8 N -0.647 5.647 9 C 0.453 3.547 10 O -0.552 6.552 11 C -0.101 4.101 12 C 0.049 3.951 13 C -0.547 4.547 14 H 0.070 0.930 15 C -0.007 4.007 16 N -0.938 5.938 17 Si 0.981 3.019 18 H -0.268 1.268 19 H -0.280 1.280 20 H -0.257 1.257 21 C -0.215 4.215 22 C 0.201 3.799 23 N -0.544 5.544 24 H 0.455 0.545 25 H 0.117 0.883 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.084 0.916 30 H -0.022 1.022 31 H -0.022 1.022 32 H 0.264 0.736 33 H 0.197 0.803 34 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.006 31.024 0.022 31.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.252 6.252 3 C 0.373 3.627 4 O -0.369 6.369 5 C 0.097 3.903 6 N -0.235 5.235 7 C 0.145 3.855 8 N -0.397 5.397 9 C 0.240 3.760 10 O -0.431 6.431 11 C -0.141 4.141 12 C 0.011 3.989 13 C -0.585 4.585 14 H 0.088 0.912 15 C -0.204 4.204 16 N -0.578 5.578 17 Si 0.804 3.196 18 H -0.194 1.194 19 H -0.205 1.205 20 H -0.181 1.181 21 C -0.243 4.243 22 C 0.067 3.933 23 N -0.159 5.159 24 H 0.299 0.701 25 H 0.136 0.864 26 H 0.103 0.897 27 H 0.103 0.897 28 H 0.102 0.898 29 H 0.102 0.898 30 H -0.004 1.004 31 H -0.004 1.004 32 H 0.073 0.927 33 H 0.214 0.786 34 H 0.291 0.709 Dipole moment (debyes) X Y Z Total from point charges -2.507 29.918 0.011 30.023 hybrid contribution -0.764 -0.520 0.013 0.924 sum -3.271 29.398 0.024 29.580 Atomic orbital electron populations 1.23834 0.72429 1.06128 1.04201 1.86817 1.26413 1.30521 1.81418 1.20161 0.86211 0.82695 0.73653 1.90874 1.65352 1.35390 1.45306 1.21555 0.92575 0.83086 0.93082 1.70017 1.10857 1.25805 1.16832 1.21381 0.84644 0.95846 0.83648 1.70374 1.36559 0.97236 1.35542 1.22035 0.87463 0.91276 0.75181 1.90737 1.17868 1.90640 1.43875 1.21283 0.98653 0.91266 1.02865 1.18650 0.93692 0.92473 0.94072 1.21706 0.93802 0.91790 1.51190 0.91180 1.26211 0.96114 1.03795 0.94313 1.70204 1.09600 1.26621 1.51352 0.85224 0.78541 0.77144 0.78713 1.19374 1.20497 1.18108 1.21862 1.04862 0.87771 1.09827 1.23547 0.79150 1.03252 0.87337 1.42246 1.09172 1.08720 1.55806 0.70055 0.86432 0.89686 0.89696 0.89811 0.89782 1.00386 1.00380 0.92732 0.78633 0.70908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 10.56 113.37 1.20 1.68 16 2 O -0.34 -9.75 10.37 -55.30 -0.57 -10.32 16 3 C 0.53 12.13 8.00 70.63 0.57 12.70 16 4 O -0.48 -9.16 16.20 20.38 0.33 -8.83 16 5 C 0.37 8.10 7.68 137.13 1.05 9.15 16 6 N -0.51 -17.77 7.55 -185.97 -1.40 -19.17 16 7 C 0.40 13.23 7.38 134.51 0.99 14.23 16 8 N -0.65 -28.16 10.43 -311.61 -3.25 -31.41 16 9 C 0.45 24.32 7.70 88.01 0.68 24.99 16 10 O -0.55 -33.19 14.09 -4.26 -0.06 -33.25 16 11 C -0.10 -5.52 5.71 29.85 0.17 -5.35 16 12 C 0.05 3.21 4.26 29.85 0.13 3.33 16 13 C -0.55 -35.47 9.11 25.60 0.23 -35.23 16 14 H 0.07 4.23 7.74 -2.91 -0.02 4.21 16 15 C -0.01 -0.46 5.46 84.65 0.46 0.00 16 16 N -0.94 -63.87 13.29 21.44 0.28 -63.59 16 17 Si 0.98 48.04 29.54 68.60 2.03 50.06 16 18 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 19 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 20 H -0.26 -11.83 7.11 99.48 0.71 -11.13 16 21 C -0.21 -3.23 10.04 22.45 0.23 -3.00 16 22 C 0.20 0.43 11.26 83.62 0.94 1.37 16 23 N -0.54 -3.74 5.26 -187.68 -0.99 -4.72 16 24 H 0.46 -0.51 8.20 -92.71 -0.76 -1.27 16 25 H 0.12 2.03 8.14 -2.38 -0.02 2.01 16 26 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.08 4.31 8.14 -2.39 -0.02 4.29 16 29 H 0.08 4.32 8.14 -2.39 -0.02 4.30 16 30 H -0.02 -1.62 8.10 -2.39 -0.02 -1.64 16 31 H -0.02 -1.62 8.10 -2.39 -0.02 -1.64 16 32 H 0.26 16.61 8.31 -92.70 -0.77 15.83 16 33 H 0.20 2.00 8.06 -2.91 -0.02 1.98 16 34 H 0.28 -3.66 8.06 -2.91 -0.02 -3.68 16 Total: -1.00 -109.42 312.48 3.40 -106.02 By element: Atomic # 1 Polarization: -9.04 SS G_CDS: 0.38 Total: -8.65 kcal Atomic # 6 Polarization: 17.22 SS G_CDS: 6.65 Total: 23.86 kcal Atomic # 7 Polarization: -113.54 SS G_CDS: -5.36 Total: -118.90 kcal Atomic # 8 Polarization: -52.10 SS G_CDS: -0.30 Total: -52.40 kcal Atomic # 14 Polarization: 48.04 SS G_CDS: 2.03 Total: 50.06 kcal Total: -109.42 3.40 -106.02 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001531633308.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.233 kcal (2) G-P(sol) polarization free energy of solvation -109.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -106.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds