Wall clock time and date at job start Wed Apr 15 2020 11:43:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46828 * 270.00028 * 3 2 1 5 5 H 1.48494 * 109.47178 * 29.99723 * 3 2 1 6 6 H 1.48500 * 109.47075 * 149.99970 * 3 2 1 7 7 C 1.37877 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00223 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46912 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.46912 * 179.97438 * 10 9 7 12 12 O 1.21278 * 119.99985 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00161 * 180.02562 * 11 10 9 14 14 C 1.46496 * 120.00271 * 180.02562 * 13 11 10 15 15 H 1.09002 * 110.82657 * 328.70575 * 14 13 11 16 16 C 1.54705 * 110.94074 * 92.45298 * 14 13 11 17 17 O 1.43761 * 102.78697 * 143.45412 * 16 14 13 18 18 C 1.36199 * 109.23600 * 332.25633 * 17 16 14 19 19 C 1.39266 * 129.85843 * 198.41963 * 18 17 16 20 20 C 1.37932 * 120.27418 * 181.01289 * 19 18 17 21 21 C 1.38472 * 120.32527 * 359.95135 * 20 19 18 22 22 F 1.35099 * 120.14407 * 179.83681 * 21 20 19 23 23 C 1.38535 * 119.71193 * 359.85762 * 21 20 19 24 24 C 1.37753 * 119.96162 * 359.97438 * 23 21 20 25 25 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.46980 * 59.99570 * 9 7 2 27 27 H 1.08992 * 109.47158 * 299.99676 * 9 7 2 28 28 H 1.09002 * 109.47398 * 300.00078 * 10 9 7 29 29 H 1.09001 * 109.47194 * 60.00258 * 10 9 7 30 30 H 0.97005 * 119.99463 * 359.97438 * 13 11 10 31 31 H 1.09000 * 110.74659 * 261.77874 * 16 14 13 32 32 H 1.09001 * 110.75089 * 25.12757 * 16 14 13 33 33 H 1.08004 * 119.86183 * 0.98628 * 19 18 17 34 34 H 1.08002 * 119.83746 * 179.97438 * 20 19 18 35 35 H 1.08001 * 120.02201 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4919 -4.9672 0.0012 12 8 0.2791 -4.9672 0.0021 13 7 2.1657 -6.1344 0.0018 14 6 1.4333 -7.4031 0.0019 15 1 0.4854 -7.3033 0.5306 16 6 1.2110 -7.9133 -1.4416 17 8 1.3466 -9.3375 -1.3002 18 6 2.1683 -9.6077 -0.2481 19 6 2.8614 -10.7740 0.0666 20 6 3.6321 -10.8382 1.2086 21 6 3.7247 -9.7439 2.0521 22 9 4.4780 -9.8119 3.1715 23 6 3.0412 -8.5791 1.7432 24 6 2.2742 -8.5139 0.6008 25 1 -0.4850 0.8400 -0.0004 26 1 0.6247 -2.5571 -0.8897 27 1 0.6241 -2.5568 0.8902 28 1 2.8720 -3.6043 -0.8894 29 1 2.8720 -3.6043 0.8905 30 1 3.1358 -6.1343 0.0015 31 1 0.2127 -7.6535 -1.7936 32 1 1.9733 -7.5176 -2.1128 33 1 2.7947 -11.6318 -0.5862 34 1 4.1663 -11.7463 1.4461 35 1 3.1102 -7.7225 2.3973 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360662582.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:11 Heat of formation + Delta-G solvation = -93.709022 kcal Electronic energy + Delta-G solvation = -20630.356297 eV Core-core repulsion = 17122.069549 eV Total energy + Delta-G solvation = -3508.286748 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.106 amu Computer time = 2.35 seconds Orbital eigenvalues (eV) -49.10338 -41.58208 -39.10552 -37.52695 -34.89590 -33.51409 -31.79004 -30.92275 -29.84336 -28.99633 -25.76329 -23.99866 -22.74747 -22.31686 -21.17595 -19.91149 -17.90595 -17.82851 -17.26913 -16.93484 -16.49527 -15.76839 -15.69565 -15.25815 -14.95839 -14.71761 -14.45772 -14.32571 -13.70548 -13.37035 -13.05315 -12.96498 -12.80638 -12.58982 -12.23988 -12.12271 -11.24213 -11.19168 -11.03072 -10.95690 -10.63072 -10.02511 -9.77427 -9.60919 -9.27732 -9.11296 -9.07120 -8.38724 -8.35757 -5.99880 -4.04595 0.69090 0.81457 2.85058 3.02206 3.03970 3.31109 3.37311 3.39609 3.47062 3.73550 4.14318 4.29437 4.44208 4.50327 4.67751 4.81271 5.00863 5.08146 5.28406 5.32870 5.35291 5.51159 5.65107 5.73151 5.74583 5.90160 6.13475 6.15172 6.18998 6.44363 6.75496 6.80459 7.66629 7.70097 7.79746 8.01914 8.32838 8.58684 9.03518 9.59350 11.10998 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.028306 B = 0.003259 C = 0.003014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.962326 B = 8589.928818 C = 9287.983187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.529 4.529 8 H 0.056 0.944 9 C 0.037 3.963 10 C -0.129 4.129 11 C 0.512 3.488 12 O -0.529 6.529 13 N -0.733 5.733 14 C 0.161 3.839 15 H 0.120 0.880 16 C 0.040 3.960 17 O -0.297 6.297 18 C 0.109 3.891 19 C -0.114 4.114 20 C -0.112 4.112 21 C 0.066 3.934 22 F -0.137 7.137 23 C -0.089 4.089 24 C -0.159 4.159 25 H 0.261 0.739 26 H 0.024 0.976 27 H 0.024 0.976 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.402 0.598 31 H 0.118 0.882 32 H 0.086 0.914 33 H 0.140 0.860 34 H 0.145 0.855 35 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.091 -22.303 0.269 23.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.567 4.567 8 H 0.074 0.926 9 C -0.001 4.001 10 C -0.169 4.169 11 C 0.301 3.699 12 O -0.403 6.403 13 N -0.388 5.388 14 C 0.055 3.945 15 H 0.138 0.862 16 C -0.036 4.036 17 O -0.210 6.210 18 C 0.063 3.937 19 C -0.132 4.132 20 C -0.131 4.131 21 C 0.047 3.953 22 F -0.116 7.116 23 C -0.108 4.108 24 C -0.161 4.161 25 H 0.071 0.929 26 H 0.042 0.958 27 H 0.042 0.958 28 H 0.100 0.900 29 H 0.100 0.900 30 H 0.237 0.763 31 H 0.136 0.864 32 H 0.104 0.896 33 H 0.158 0.842 34 H 0.162 0.838 35 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 6.926 -22.289 0.153 23.341 hybrid contribution 1.057 1.045 0.270 1.511 sum 7.984 -21.245 0.424 22.699 Atomic orbital electron populations 1.69990 1.06064 1.26659 1.50070 1.25023 0.94833 0.99265 0.95236 0.86584 0.79780 0.83458 0.78087 1.20654 1.21205 1.19865 1.21207 0.92941 0.90965 1.51572 0.92576 1.18911 0.93146 0.89345 0.98682 1.21896 1.00795 0.91480 1.02745 1.21741 0.88744 0.85533 0.73846 1.90686 1.14392 1.87414 1.47825 1.46208 1.10163 1.04323 1.78114 1.20945 0.96321 0.82466 0.94758 0.86221 1.24448 1.04854 0.77026 0.97258 1.86904 1.61383 1.25343 1.47406 1.19556 0.91364 0.94944 0.87876 1.20066 0.97740 0.97015 0.98410 1.20873 0.99960 0.98356 0.93900 1.17374 0.96784 0.95273 0.85889 1.91513 1.73978 1.96808 1.49284 1.20275 0.96215 0.97679 0.96645 1.20662 1.01882 0.97020 0.96518 0.92903 0.95776 0.95761 0.89994 0.90003 0.76298 0.86390 0.89605 0.84182 0.83771 0.84104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.05 13.29 55.43 0.74 -26.32 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.53 -14.70 9.11 -34.44 -0.31 -15.01 16 8 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 9 C 0.04 0.96 4.26 -27.88 -0.12 0.84 16 10 C -0.13 -2.47 5.64 -27.88 -0.16 -2.63 16 11 C 0.51 9.08 7.83 -10.98 -0.09 8.99 16 12 O -0.53 -11.58 15.62 5.56 0.09 -11.50 16 13 N -0.73 -9.39 5.15 -53.60 -0.28 -9.67 16 14 C 0.16 1.94 3.50 -67.72 -0.24 1.71 16 15 H 0.12 1.64 7.54 -51.93 -0.39 1.25 16 16 C 0.04 0.44 7.73 38.05 0.29 0.73 16 17 O -0.30 -3.39 11.11 -20.38 -0.23 -3.61 16 18 C 0.11 1.15 7.04 -38.97 -0.27 0.88 16 19 C -0.11 -0.96 10.06 -39.31 -0.40 -1.35 16 20 C -0.11 -0.90 10.00 -39.61 -0.40 -1.29 16 21 C 0.07 0.64 7.31 -39.39 -0.29 0.36 16 22 F -0.14 -1.45 17.27 2.25 0.04 -1.41 16 23 C -0.09 -0.91 10.02 -39.65 -0.40 -1.31 16 24 C -0.16 -1.72 5.82 -104.10 -0.61 -2.33 16 25 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 26 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 27 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 28 H 0.08 1.42 8.14 -51.93 -0.42 0.99 16 29 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 30 H 0.40 4.13 8.65 -40.82 -0.35 3.78 16 31 H 0.12 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.09 0.86 8.09 -51.93 -0.42 0.44 16 33 H 0.14 0.88 8.06 -52.48 -0.42 0.46 16 34 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 35 H 0.14 1.36 8.06 -52.49 -0.42 0.94 16 LS Contribution 312.20 15.07 4.70 4.70 Total: -1.00 -32.96 312.20 -7.11 -40.07 By element: Atomic # 1 Polarization: 4.28 SS G_CDS: -4.08 Total: 0.20 kcal Atomic # 6 Polarization: -5.78 SS G_CDS: -3.07 Total: -8.85 kcal Atomic # 7 Polarization: -36.45 SS G_CDS: 0.46 Total: -35.99 kcal Atomic # 8 Polarization: -14.97 SS G_CDS: -0.14 Total: -15.11 kcal Atomic # 9 Polarization: -1.45 SS G_CDS: 0.04 Total: -1.41 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -32.96 -7.11 -40.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360662582.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.636 kcal (2) G-P(sol) polarization free energy of solvation -32.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.35 seconds