Wall clock time and date at job start Wed Apr 15 2020 11:43:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46828 * 270.00028 * 3 2 1 5 5 H 1.48494 * 109.47178 * 29.99723 * 3 2 1 6 6 H 1.48500 * 109.47075 * 149.99970 * 3 2 1 7 7 C 1.37877 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00223 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46912 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.46912 * 179.97438 * 10 9 7 12 12 O 1.21278 * 119.99985 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00161 * 180.02562 * 11 10 9 14 14 C 1.46496 * 120.00271 * 180.02562 * 13 11 10 15 15 H 1.09002 * 110.82657 * 328.70575 * 14 13 11 16 16 C 1.54705 * 110.94074 * 92.45298 * 14 13 11 17 17 O 1.43761 * 102.78697 * 143.45412 * 16 14 13 18 18 C 1.36199 * 109.23600 * 332.25633 * 17 16 14 19 19 C 1.39266 * 129.85843 * 198.41963 * 18 17 16 20 20 C 1.37932 * 120.27418 * 181.01289 * 19 18 17 21 21 C 1.38472 * 120.32527 * 359.95135 * 20 19 18 22 22 F 1.35099 * 120.14407 * 179.83681 * 21 20 19 23 23 C 1.38535 * 119.71193 * 359.85762 * 21 20 19 24 24 C 1.37753 * 119.96162 * 359.97438 * 23 21 20 25 25 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.46980 * 59.99570 * 9 7 2 27 27 H 1.08992 * 109.47158 * 299.99676 * 9 7 2 28 28 H 1.09002 * 109.47398 * 300.00078 * 10 9 7 29 29 H 1.09001 * 109.47194 * 60.00258 * 10 9 7 30 30 H 0.97005 * 119.99463 * 359.97438 * 13 11 10 31 31 H 1.09000 * 110.74659 * 261.77874 * 16 14 13 32 32 H 1.09001 * 110.75089 * 25.12757 * 16 14 13 33 33 H 1.08004 * 119.86183 * 0.98628 * 19 18 17 34 34 H 1.08002 * 119.83746 * 179.97438 * 20 19 18 35 35 H 1.08001 * 120.02201 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4919 -4.9672 0.0012 12 8 0.2791 -4.9672 0.0021 13 7 2.1657 -6.1344 0.0018 14 6 1.4333 -7.4031 0.0019 15 1 0.4854 -7.3033 0.5306 16 6 1.2110 -7.9133 -1.4416 17 8 1.3466 -9.3375 -1.3002 18 6 2.1683 -9.6077 -0.2481 19 6 2.8614 -10.7740 0.0666 20 6 3.6321 -10.8382 1.2086 21 6 3.7247 -9.7439 2.0521 22 9 4.4780 -9.8119 3.1715 23 6 3.0412 -8.5791 1.7432 24 6 2.2742 -8.5139 0.6008 25 1 -0.4850 0.8400 -0.0004 26 1 0.6247 -2.5571 -0.8897 27 1 0.6241 -2.5568 0.8902 28 1 2.8720 -3.6043 -0.8894 29 1 2.8720 -3.6043 0.8905 30 1 3.1358 -6.1343 0.0015 31 1 0.2127 -7.6535 -1.7936 32 1 1.9733 -7.5176 -2.1128 33 1 2.7947 -11.6318 -0.5862 34 1 4.1663 -11.7463 1.4461 35 1 3.1102 -7.7225 2.3973 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360662582.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:09 Heat of formation + Delta-G solvation = -115.852736 kcal Electronic energy + Delta-G solvation = -20631.316521 eV Core-core repulsion = 17122.069549 eV Total energy + Delta-G solvation = -3509.246971 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.106 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.88028 -42.45326 -40.51172 -38.29730 -36.11172 -35.53487 -33.22700 -32.30579 -30.64976 -29.99814 -27.64042 -24.91905 -24.02410 -23.29578 -22.43934 -21.36123 -19.01677 -18.65610 -18.55013 -18.04820 -17.64416 -17.21993 -16.59353 -16.49171 -16.48112 -16.04092 -15.59484 -15.22261 -14.82603 -14.51071 -14.25515 -14.15996 -13.91952 -13.66128 -13.56284 -13.35608 -13.23562 -12.81702 -12.47839 -11.98635 -11.92117 -11.85843 -11.64265 -11.30885 -10.89627 -10.57199 -10.41469 -10.10707 -9.19081 -8.17878 -6.31547 -0.05466 0.06840 1.42845 1.45057 1.55951 1.60438 1.93345 2.14888 2.42681 2.53455 2.91490 3.15512 3.30974 3.49353 3.69663 3.89380 4.03022 4.03403 4.23323 4.33240 4.47051 4.51360 4.55555 4.60682 4.77158 4.98114 5.05727 5.07871 5.14775 5.27319 5.46797 5.51192 5.63991 5.85954 5.97096 6.17861 6.47445 6.86985 7.22766 7.38799 8.94602 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.028306 B = 0.003259 C = 0.003014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.962326 B = 8589.928818 C = 9287.983187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.006 4.006 3 Si 0.972 3.028 4 H -0.272 1.272 5 H -0.287 1.287 6 H -0.256 1.256 7 C -0.543 4.543 8 H 0.076 0.924 9 C 0.041 3.959 10 C -0.119 4.119 11 C 0.518 3.482 12 O -0.580 6.580 13 N -0.707 5.707 14 C 0.159 3.841 15 H 0.098 0.902 16 C 0.044 3.956 17 O -0.304 6.304 18 C 0.095 3.905 19 C -0.106 4.106 20 C -0.098 4.098 21 C 0.057 3.943 22 F -0.143 7.143 23 C -0.095 4.095 24 C -0.168 4.168 25 H 0.262 0.738 26 H -0.015 1.015 27 H -0.017 1.017 28 H 0.108 0.892 29 H 0.105 0.895 30 H 0.419 0.581 31 H 0.116 0.884 32 H 0.098 0.902 33 H 0.167 0.833 34 H 0.175 0.825 35 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.903 -23.594 0.078 25.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.204 4.204 3 Si 0.796 3.204 4 H -0.197 1.197 5 H -0.213 1.213 6 H -0.180 1.180 7 C -0.581 4.581 8 H 0.094 0.906 9 C 0.003 3.997 10 C -0.159 4.159 11 C 0.307 3.693 12 O -0.458 6.458 13 N -0.361 5.361 14 C 0.053 3.947 15 H 0.116 0.884 16 C -0.032 4.032 17 O -0.218 6.218 18 C 0.049 3.951 19 C -0.124 4.124 20 C -0.117 4.117 21 C 0.038 3.962 22 F -0.122 7.122 23 C -0.115 4.115 24 C -0.170 4.170 25 H 0.071 0.929 26 H 0.004 0.996 27 H 0.001 0.999 28 H 0.126 0.874 29 H 0.123 0.877 30 H 0.257 0.743 31 H 0.134 0.866 32 H 0.116 0.884 33 H 0.184 0.816 34 H 0.193 0.807 35 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 9.805 -23.629 -0.036 25.582 hybrid contribution 0.194 1.325 0.360 1.386 sum 10.000 -22.304 0.324 24.445 Atomic orbital electron populations 1.70167 1.08254 1.27779 1.51507 1.26111 0.95704 1.03872 0.94706 0.85347 0.78685 0.77872 0.78503 1.19717 1.21319 1.17954 1.21720 0.94013 0.91643 1.50698 0.90611 1.18702 0.93729 0.92347 0.94889 1.21654 0.99361 0.89712 1.05128 1.21398 0.87862 0.86443 0.73554 1.90677 1.16465 1.88124 1.50548 1.45823 1.10863 1.03418 1.76040 1.20934 0.95707 0.82185 0.95835 0.88397 1.24390 1.05244 0.77165 0.96400 1.86889 1.61914 1.25121 1.47841 1.19835 0.91889 0.95724 0.87633 1.20406 0.96490 0.96914 0.98602 1.21212 0.98968 0.98710 0.92762 1.17546 0.96873 0.95716 0.86104 1.91502 1.74131 1.96842 1.49680 1.20317 0.96431 0.98239 0.96469 1.20468 1.02642 0.96628 0.97223 0.92882 0.99645 0.99859 0.87365 0.87675 0.74325 0.86584 0.88373 0.81552 0.80716 0.84126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.84 13.29 21.45 0.28 -58.56 16 2 C -0.01 -0.37 5.46 84.66 0.46 0.09 16 3 Si 0.97 43.81 29.54 68.60 2.03 45.83 16 4 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 5 H -0.29 -12.89 7.11 99.48 0.71 -12.19 16 6 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 7 C -0.54 -30.31 9.11 25.60 0.23 -30.07 16 8 H 0.08 3.84 7.74 -2.91 -0.02 3.82 16 9 C 0.04 2.22 4.26 29.85 0.13 2.34 16 10 C -0.12 -4.50 5.64 29.85 0.17 -4.33 16 11 C 0.52 18.57 7.83 87.66 0.69 19.25 16 12 O -0.58 -26.64 15.62 -3.02 -0.05 -26.68 16 13 N -0.71 -17.60 5.15 -441.89 -2.27 -19.87 16 14 C 0.16 3.82 3.50 45.13 0.16 3.98 16 15 H 0.10 2.81 7.54 -2.39 -0.02 2.79 16 16 C 0.04 0.94 7.73 72.56 0.56 1.50 16 17 O -0.30 -6.56 11.11 -95.82 -1.06 -7.62 16 18 C 0.10 1.83 7.04 22.67 0.16 1.99 16 19 C -0.11 -1.45 10.06 22.44 0.23 -1.22 16 20 C -0.10 -1.24 10.00 22.25 0.22 -1.02 16 21 C 0.06 0.99 7.31 22.40 0.16 1.15 16 22 F -0.14 -2.74 17.27 44.97 0.78 -1.96 16 23 C -0.10 -1.82 10.02 22.23 0.22 -1.60 16 24 C -0.17 -3.45 5.82 -19.53 -0.11 -3.56 16 25 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 26 H -0.01 -0.91 8.10 -2.39 -0.02 -0.93 16 27 H -0.02 -1.05 8.10 -2.39 -0.02 -1.07 16 28 H 0.11 3.53 8.14 -2.39 -0.02 3.51 16 29 H 0.11 3.49 8.14 -2.39 -0.02 3.47 16 30 H 0.42 7.78 8.65 -92.70 -0.80 6.98 16 31 H 0.12 2.50 8.14 -2.39 -0.02 2.49 16 32 H 0.10 1.84 8.09 -2.39 -0.02 1.82 16 33 H 0.17 1.41 8.06 -2.91 -0.02 1.38 16 34 H 0.18 1.14 8.06 -2.91 -0.02 1.12 16 35 H 0.14 2.61 8.06 -2.91 -0.02 2.58 16 Total: -1.00 -74.28 312.20 3.30 -70.98 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: 0.32 Total: 9.39 kcal Atomic # 6 Polarization: -14.78 SS G_CDS: 3.28 Total: -11.50 kcal Atomic # 7 Polarization: -76.44 SS G_CDS: -1.99 Total: -78.43 kcal Atomic # 8 Polarization: -33.19 SS G_CDS: -1.11 Total: -34.30 kcal Atomic # 9 Polarization: -2.74 SS G_CDS: 0.78 Total: -1.96 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.83 kcal Total: -74.28 3.30 -70.98 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360662582.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.876 kcal (2) G-P(sol) polarization free energy of solvation -74.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds