Wall clock time and date at job start Wed Apr 15 2020 11:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86794 * 120.00137 * 2 1 4 4 H 1.48506 * 109.47413 * 269.99935 * 3 2 1 5 5 H 1.48499 * 109.47127 * 30.00289 * 3 2 1 6 6 H 1.48507 * 109.47059 * 150.00190 * 3 2 1 7 7 C 1.38803 * 119.99682 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99896 * 180.02562 * 7 2 1 9 9 S 1.76198 * 120.00094 * 359.97438 * 7 2 1 10 10 C 1.80996 * 100.00062 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.46985 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.46981 * 180.02562 * 11 10 9 13 13 N 1.46894 * 109.47231 * 174.76163 * 12 11 10 14 14 C 1.48046 * 111.00145 * 174.80437 * 13 12 11 15 15 C 1.51209 * 105.67596 * 213.00445 * 14 13 12 16 16 C 1.38224 * 131.70532 * 197.49555 * 15 14 13 17 17 C 1.38126 * 120.10275 * 180.02562 * 16 15 14 18 18 C 1.38758 * 119.94499 * 359.97438 * 17 16 15 19 19 O 1.35898 * 120.05917 * 179.97438 * 18 17 16 20 20 C 1.38717 * 119.88303 * 0.02562 * 18 17 16 21 21 C 1.38092 * 119.98730 * 0.02562 * 20 18 17 22 22 C 1.48042 * 111.00269 * 59.78505 * 13 12 11 23 23 H 0.97009 * 119.99755 * 359.97438 * 1 2 3 24 24 H 1.08997 * 109.47212 * 60.00071 * 10 9 7 25 25 H 1.09001 * 109.46995 * 299.99987 * 10 9 7 26 26 H 1.08996 * 109.47440 * 60.00420 * 11 10 9 27 27 H 1.09001 * 109.47176 * 299.99793 * 11 10 9 28 28 H 1.09002 * 109.47043 * 54.75849 * 12 11 10 29 29 H 1.09004 * 109.46684 * 294.76132 * 12 11 10 30 30 H 1.08997 * 110.20352 * 332.05032 * 14 13 12 31 31 H 1.08996 * 110.21124 * 93.95371 * 14 13 12 32 32 H 1.08002 * 119.95240 * 359.97438 * 16 15 14 33 33 H 1.07998 * 120.02785 * 179.97438 * 17 16 15 34 34 H 0.96695 * 114.00400 * 270.02442 * 19 18 17 35 35 H 1.07996 * 120.00609 * 179.97438 * 20 18 17 36 36 H 1.09000 * 110.21063 * 266.04470 * 22 13 12 37 37 H 1.08996 * 110.20727 * 27.94470 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0464 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4400 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 16 1.1292 -2.7280 -0.0005 10 6 2.5156 -3.8915 -0.0005 11 6 1.9790 -5.3243 -0.0012 12 6 3.1510 -6.3079 -0.0005 13 7 2.6395 -7.6791 0.1253 14 6 3.7353 -8.6673 0.0050 15 6 3.1224 -9.8778 -0.6624 16 6 3.5442 -11.1911 -0.7514 17 6 2.7821 -12.1187 -1.4344 18 6 1.5910 -11.7317 -2.0317 19 8 0.8396 -12.6424 -2.7047 20 6 1.1690 -10.4134 -1.9415 21 6 1.9344 -9.4889 -1.2586 22 6 1.7347 -8.0130 -0.9979 23 1 -0.4850 0.8401 0.0004 24 1 3.1242 -3.7315 0.8894 25 1 3.1242 -3.7314 -0.8905 26 1 1.3707 -5.4841 -0.8914 27 1 1.3701 -5.4846 0.8886 28 1 3.8099 -6.0873 0.8393 29 1 3.7067 -6.2115 -0.9334 30 1 4.5394 -8.2646 -0.6108 31 1 4.1130 -8.9327 0.9924 32 1 4.4715 -11.4922 -0.2868 33 1 3.1131 -13.1444 -1.5035 34 1 1.0578 -12.7153 -3.6439 35 1 0.2425 -10.1099 -2.4060 36 1 0.6996 -7.8164 -0.7188 37 1 2.0032 -7.4352 -1.8822 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599536805.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:26 Heat of formation + Delta-G solvation = -16.915721 kcal Electronic energy + Delta-G solvation = -18155.774445 eV Core-core repulsion = 15217.030881 eV Total energy + Delta-G solvation = -2938.743564 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.103 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.75509 -38.60789 -36.31029 -33.41841 -32.42672 -31.64935 -29.89969 -27.64936 -26.10516 -25.40006 -22.97687 -21.92338 -21.53048 -20.58256 -18.32588 -17.45996 -16.60262 -16.04851 -15.84681 -15.59822 -14.89488 -14.80085 -14.25706 -14.15828 -14.02695 -13.52144 -13.07999 -12.94300 -12.64287 -12.42604 -12.08497 -11.82493 -11.61667 -11.59427 -11.24040 -11.06968 -10.80802 -10.68847 -10.62058 -10.42214 -9.54525 -9.21736 -9.05927 -8.99111 -8.32231 -8.30445 -6.52901 -6.22811 -3.93075 0.90563 1.03892 3.20993 3.22005 3.27561 3.29007 3.51868 3.75832 3.92541 4.22281 4.24618 4.35163 4.71024 4.97760 5.07933 5.12116 5.13261 5.24533 5.26319 5.33652 5.37895 5.50090 5.58061 5.65735 5.68996 5.74557 5.84070 5.97265 6.06554 6.10401 6.22656 6.30296 6.47647 6.54350 6.65696 6.73408 6.92323 7.33295 7.60466 8.36561 9.23454 10.85389 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.046540 B = 0.002606 C = 0.002506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.489221 B =10740.227934 C =11171.843647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.070 3.930 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.516 4.516 8 H 0.072 0.928 9 S -0.132 6.132 10 C -0.113 4.113 11 C -0.096 4.096 12 C 0.049 3.951 13 N -0.501 5.501 14 C 0.075 3.925 15 C -0.110 4.110 16 C -0.085 4.085 17 C -0.146 4.146 18 C 0.104 3.896 19 O -0.498 6.498 20 C -0.126 4.126 21 C -0.081 4.081 22 C 0.072 3.928 23 H 0.267 0.733 24 H 0.061 0.939 25 H 0.058 0.942 26 H 0.065 0.935 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.038 0.962 30 H 0.062 0.938 31 H 0.092 0.908 32 H 0.127 0.873 33 H 0.130 0.870 34 H 0.390 0.610 35 H 0.130 0.870 36 H 0.097 0.903 37 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.087 -22.768 -4.542 24.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.138 4.138 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.664 4.664 8 H 0.090 0.910 9 S 0.096 5.904 10 C -0.262 4.262 11 C -0.135 4.135 12 C -0.080 4.080 13 N -0.225 5.225 14 C -0.053 4.053 15 C -0.110 4.110 16 C -0.103 4.103 17 C -0.164 4.164 18 C 0.060 3.940 19 O -0.308 6.308 20 C -0.145 4.145 21 C -0.081 4.081 22 C -0.055 4.055 23 H 0.077 0.923 24 H 0.080 0.920 25 H 0.077 0.923 26 H 0.083 0.917 27 H 0.095 0.905 28 H 0.100 0.900 29 H 0.056 0.944 30 H 0.080 0.920 31 H 0.110 0.890 32 H 0.145 0.855 33 H 0.148 0.852 34 H 0.245 0.755 35 H 0.148 0.852 36 H 0.115 0.885 37 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 5.268 -22.917 -3.456 23.767 hybrid contribution 2.468 1.385 -1.282 3.107 sum 7.736 -21.532 -4.738 23.365 Atomic orbital electron populations 1.70026 1.05922 1.27320 1.47258 1.25020 0.95087 0.99099 0.94631 0.86164 0.79449 0.81557 0.78339 1.20298 1.20743 1.19690 1.22689 0.94506 0.90790 1.58460 0.90972 1.84642 1.09482 0.99401 1.96848 1.23223 1.02918 0.97234 1.02802 1.21301 0.96792 0.92113 1.03298 1.22491 0.97826 0.86855 1.00859 1.65326 1.13310 1.02898 1.40932 1.21655 0.93689 0.89418 1.00504 1.20670 0.96359 0.94704 0.99291 1.20335 0.99837 0.91236 0.98927 1.21300 0.94302 1.00121 1.00684 1.18287 0.90722 0.87751 0.97242 1.84834 1.60672 1.59263 1.26050 1.20737 1.00658 0.91581 1.01496 1.20534 0.94947 0.95930 0.96736 1.21717 1.00048 0.90202 0.93535 0.92305 0.91990 0.92325 0.91663 0.90474 0.90031 0.94391 0.91996 0.88991 0.85509 0.85177 0.75466 0.85193 0.88491 0.91452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.06 13.22 55.49 0.73 -25.33 16 2 C 0.07 2.01 5.49 -17.43 -0.10 1.92 16 3 Si 0.92 21.55 29.55 -169.99 -5.02 16.52 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 7 C -0.52 -14.82 9.50 30.94 0.29 -14.53 16 8 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 9 S -0.13 -3.46 21.44 -107.50 -2.30 -5.76 16 10 C -0.11 -2.25 5.67 37.16 0.21 -2.03 16 11 C -0.10 -1.55 5.01 -26.73 -0.13 -1.69 16 12 C 0.05 0.64 4.75 -3.82 -0.02 0.62 16 13 N -0.50 -6.31 5.55 -234.91 -1.30 -7.61 16 14 C 0.07 0.79 6.61 -4.10 -0.03 0.76 16 15 C -0.11 -1.18 6.26 -104.28 -0.65 -1.83 16 16 C -0.08 -0.77 10.04 -39.63 -0.40 -1.17 16 17 C -0.15 -1.30 9.99 -39.43 -0.39 -1.69 16 18 C 0.10 1.02 6.71 -39.21 -0.26 0.76 16 19 O -0.50 -4.22 13.50 -19.42 -0.26 -4.48 16 20 C -0.13 -1.32 9.98 -39.46 -0.39 -1.72 16 21 C -0.08 -0.92 6.26 -104.34 -0.65 -1.57 16 22 C 0.07 0.86 5.38 -4.10 -0.02 0.84 16 23 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 24 H 0.06 1.22 8.14 -51.92 -0.42 0.80 16 25 H 0.06 1.15 8.14 -51.92 -0.42 0.73 16 26 H 0.06 1.05 7.26 -51.93 -0.38 0.67 16 27 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 28 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 29 H 0.04 0.48 7.91 -51.93 -0.41 0.07 16 30 H 0.06 0.60 7.69 -51.93 -0.40 0.20 16 31 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 32 H 0.13 0.86 8.06 -52.49 -0.42 0.43 16 33 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 34 H 0.39 1.36 9.06 45.56 0.41 1.77 16 35 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 36 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.07 0.79 7.61 -51.93 -0.39 0.39 16 LS Contribution 324.89 15.07 4.90 4.90 Total: -1.00 -32.90 324.89 -10.33 -43.23 By element: Atomic # 1 Polarization: 4.39 SS G_CDS: -4.52 Total: -0.13 kcal Atomic # 6 Polarization: -18.78 SS G_CDS: -2.55 Total: -21.33 kcal Atomic # 7 Polarization: -32.37 SS G_CDS: -0.57 Total: -32.94 kcal Atomic # 8 Polarization: -4.22 SS G_CDS: -0.26 Total: -4.48 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: -3.46 SS G_CDS: -2.30 Total: -5.76 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -32.90 -10.33 -43.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599536805.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.314 kcal (2) G-P(sol) polarization free energy of solvation -32.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds