Wall clock time and date at job start Wed Apr 15 2020 11:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86794 * 120.00137 * 2 1 4 4 H 1.48506 * 109.47413 * 269.99935 * 3 2 1 5 5 H 1.48499 * 109.47127 * 30.00289 * 3 2 1 6 6 H 1.48507 * 109.47059 * 150.00190 * 3 2 1 7 7 C 1.38803 * 119.99682 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99896 * 180.02562 * 7 2 1 9 9 S 1.76198 * 120.00094 * 359.97438 * 7 2 1 10 10 C 1.80996 * 100.00062 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.46985 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.46981 * 180.02562 * 11 10 9 13 13 N 1.46894 * 109.47231 * 174.76163 * 12 11 10 14 14 C 1.48046 * 111.00145 * 174.80437 * 13 12 11 15 15 C 1.51209 * 105.67596 * 213.00445 * 14 13 12 16 16 C 1.38224 * 131.70532 * 197.49555 * 15 14 13 17 17 C 1.38126 * 120.10275 * 180.02562 * 16 15 14 18 18 C 1.38758 * 119.94499 * 359.97438 * 17 16 15 19 19 O 1.35898 * 120.05917 * 179.97438 * 18 17 16 20 20 C 1.38717 * 119.88303 * 0.02562 * 18 17 16 21 21 C 1.38092 * 119.98730 * 0.02562 * 20 18 17 22 22 C 1.48042 * 111.00269 * 59.78505 * 13 12 11 23 23 H 0.97009 * 119.99755 * 359.97438 * 1 2 3 24 24 H 1.08997 * 109.47212 * 60.00071 * 10 9 7 25 25 H 1.09001 * 109.46995 * 299.99987 * 10 9 7 26 26 H 1.08996 * 109.47440 * 60.00420 * 11 10 9 27 27 H 1.09001 * 109.47176 * 299.99793 * 11 10 9 28 28 H 1.09002 * 109.47043 * 54.75849 * 12 11 10 29 29 H 1.09004 * 109.46684 * 294.76132 * 12 11 10 30 30 H 1.08997 * 110.20352 * 332.05032 * 14 13 12 31 31 H 1.08996 * 110.21124 * 93.95371 * 14 13 12 32 32 H 1.08002 * 119.95240 * 359.97438 * 16 15 14 33 33 H 1.07998 * 120.02785 * 179.97438 * 17 16 15 34 34 H 0.96695 * 114.00400 * 270.02442 * 19 18 17 35 35 H 1.07996 * 120.00609 * 179.97438 * 20 18 17 36 36 H 1.09000 * 110.21063 * 266.04470 * 22 13 12 37 37 H 1.08996 * 110.20727 * 27.94470 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0464 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4400 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 16 1.1292 -2.7280 -0.0005 10 6 2.5156 -3.8915 -0.0005 11 6 1.9790 -5.3243 -0.0012 12 6 3.1510 -6.3079 -0.0005 13 7 2.6395 -7.6791 0.1253 14 6 3.7353 -8.6673 0.0050 15 6 3.1224 -9.8778 -0.6624 16 6 3.5442 -11.1911 -0.7514 17 6 2.7821 -12.1187 -1.4344 18 6 1.5910 -11.7317 -2.0317 19 8 0.8396 -12.6424 -2.7047 20 6 1.1690 -10.4134 -1.9415 21 6 1.9344 -9.4889 -1.2586 22 6 1.7347 -8.0130 -0.9979 23 1 -0.4850 0.8401 0.0004 24 1 3.1242 -3.7315 0.8894 25 1 3.1242 -3.7314 -0.8905 26 1 1.3707 -5.4841 -0.8914 27 1 1.3701 -5.4846 0.8886 28 1 3.8099 -6.0873 0.8393 29 1 3.7067 -6.2115 -0.9334 30 1 4.5394 -8.2646 -0.6108 31 1 4.1130 -8.9327 0.9924 32 1 4.4715 -11.4922 -0.2868 33 1 3.1131 -13.1444 -1.5035 34 1 1.0578 -12.7153 -3.6439 35 1 0.2425 -10.1099 -2.4060 36 1 0.6996 -7.8164 -0.7188 37 1 2.0032 -7.4352 -1.8822 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599536805.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:26 Heat of formation + Delta-G solvation = -39.539049 kcal Electronic energy + Delta-G solvation = -18156.755466 eV Core-core repulsion = 15217.030881 eV Total energy + Delta-G solvation = -2939.724585 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.103 amu Computer time = 2.80 seconds Orbital eigenvalues (eV) -41.53965 -39.38054 -37.15036 -34.67782 -34.51297 -32.41740 -30.87413 -28.47416 -27.88875 -26.88577 -24.03247 -22.80783 -22.30873 -21.70376 -19.56383 -19.00029 -17.45288 -17.01210 -16.89650 -16.67395 -16.40702 -16.12331 -15.75651 -15.15325 -14.99772 -14.68197 -14.31996 -13.95077 -13.78379 -13.54547 -13.30913 -12.95705 -12.90527 -12.84626 -12.72810 -12.44748 -12.37397 -12.26461 -11.74549 -11.38328 -11.35789 -11.14276 -10.31759 -10.01224 -9.78323 -9.15164 -8.67003 -8.37408 -6.13803 0.17974 0.30623 1.31423 1.39549 1.48943 1.73993 2.28302 2.57011 2.87179 2.96903 3.11524 3.32894 3.48632 3.58721 3.97318 4.02262 4.13411 4.24010 4.29049 4.34571 4.48019 4.49969 4.52423 4.59229 4.68695 4.79674 4.83023 4.92591 5.00247 5.14141 5.26069 5.27544 5.38841 5.39757 5.45701 5.76830 5.82032 5.93146 6.18137 6.84079 7.04786 8.72073 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.046540 B = 0.002606 C = 0.002506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.489221 B =10740.227934 C =11171.843647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.014 3.986 3 Si 0.995 3.005 4 H -0.267 1.267 5 H -0.275 1.275 6 H -0.262 1.262 7 C -0.537 4.537 8 H 0.074 0.926 9 S -0.201 6.201 10 C -0.086 4.086 11 C -0.085 4.085 12 C 0.061 3.939 13 N -0.515 5.515 14 C 0.077 3.923 15 C -0.123 4.123 16 C -0.083 4.083 17 C -0.146 4.146 18 C 0.102 3.898 19 O -0.508 6.508 20 C -0.140 4.140 21 C -0.099 4.099 22 C 0.072 3.928 23 H 0.271 0.729 24 H 0.065 0.935 25 H 0.063 0.937 26 H 0.062 0.938 27 H 0.066 0.934 28 H 0.090 0.910 29 H 0.048 0.952 30 H 0.073 0.927 31 H 0.103 0.897 32 H 0.153 0.847 33 H 0.153 0.847 34 H 0.411 0.589 35 H 0.132 0.868 36 H 0.086 0.914 37 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.106 -23.798 -4.697 25.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.191 4.191 3 Si 0.817 3.183 4 H -0.193 1.193 5 H -0.200 1.200 6 H -0.186 1.186 7 C -0.685 4.685 8 H 0.092 0.908 9 S 0.028 5.972 10 C -0.236 4.236 11 C -0.124 4.124 12 C -0.069 4.069 13 N -0.238 5.238 14 C -0.050 4.050 15 C -0.123 4.123 16 C -0.101 4.101 17 C -0.164 4.164 18 C 0.057 3.943 19 O -0.321 6.321 20 C -0.159 4.159 21 C -0.100 4.100 22 C -0.055 4.055 23 H 0.080 0.920 24 H 0.084 0.916 25 H 0.082 0.918 26 H 0.081 0.919 27 H 0.084 0.916 28 H 0.108 0.892 29 H 0.066 0.934 30 H 0.091 0.909 31 H 0.121 0.879 32 H 0.171 0.829 33 H 0.170 0.830 34 H 0.270 0.730 35 H 0.150 0.850 36 H 0.104 0.896 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 7.291 -23.968 -3.629 25.314 hybrid contribution 1.818 1.547 -1.268 2.703 sum 9.109 -22.421 -4.897 24.691 Atomic orbital electron populations 1.70164 1.07732 1.28539 1.48048 1.26093 0.96045 1.03193 0.93791 0.85002 0.78184 0.76300 0.78834 1.19253 1.19976 1.18632 1.23043 0.94755 0.91918 1.58770 0.90800 1.84683 1.14213 1.01297 1.97041 1.23139 1.00109 0.97217 1.03127 1.21168 0.97889 0.90612 1.02694 1.22297 0.96219 0.86577 1.01773 1.65273 1.14374 1.02847 1.41346 1.21689 0.93145 0.88841 1.01362 1.20819 0.96292 0.95524 0.99699 1.20642 1.00659 0.90445 0.98334 1.21595 0.93774 1.01209 0.99858 1.18411 0.91021 0.87520 0.97327 1.84776 1.60811 1.58728 1.27819 1.20876 1.00970 0.92158 1.01936 1.20551 0.95912 0.95591 0.97943 1.21656 0.99428 0.91099 0.93315 0.91981 0.91620 0.91774 0.91898 0.91565 0.89173 0.93383 0.90923 0.87927 0.82938 0.82954 0.72998 0.84983 0.89589 0.91594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.26 13.22 21.65 0.29 -54.97 16 2 C 0.01 0.78 5.49 84.86 0.47 1.24 16 3 Si 0.99 43.99 29.55 68.60 2.03 46.01 16 4 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 5 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 6 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 7 C -0.54 -31.13 9.50 67.96 0.65 -30.48 16 8 H 0.07 4.10 7.80 -2.91 -0.02 4.08 16 9 S -0.20 -10.78 21.44 -56.49 -1.21 -11.99 16 10 C -0.09 -3.43 5.67 71.98 0.41 -3.02 16 11 C -0.08 -2.72 5.01 30.60 0.15 -2.56 16 12 C 0.06 1.51 4.75 86.31 0.41 1.92 16 13 N -0.51 -12.43 5.55 -897.11 -4.98 -17.40 16 14 C 0.08 1.47 6.61 85.50 0.57 2.04 16 15 C -0.12 -2.44 6.26 -19.65 -0.12 -2.56 16 16 C -0.08 -1.30 10.04 22.24 0.22 -1.07 16 17 C -0.15 -2.25 9.99 22.37 0.22 -2.03 16 18 C 0.10 1.84 6.71 22.51 0.15 1.99 16 19 O -0.51 -7.76 13.50 -92.40 -1.25 -9.01 16 20 C -0.14 -2.89 9.98 22.35 0.22 -2.66 16 21 C -0.10 -2.21 6.26 -19.68 -0.12 -2.33 16 22 C 0.07 1.73 5.38 85.49 0.46 2.19 16 23 H 0.27 15.29 8.31 -92.70 -0.77 14.52 16 24 H 0.07 2.55 8.14 -2.40 -0.02 2.53 16 25 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 26 H 0.06 2.04 7.26 -2.39 -0.02 2.02 16 27 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 28 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 29 H 0.05 1.11 7.91 -2.38 -0.02 1.09 16 30 H 0.07 1.24 7.69 -2.39 -0.02 1.22 16 31 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.15 1.54 8.06 -2.91 -0.02 1.51 16 33 H 0.15 1.62 8.06 -2.91 -0.02 1.59 16 34 H 0.41 2.12 9.06 -74.06 -0.67 1.45 16 35 H 0.13 2.49 8.06 -2.91 -0.02 2.47 16 36 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 37 H 0.07 1.54 7.61 -2.39 -0.02 1.52 16 Total: -1.00 -71.00 324.89 -1.04 -72.04 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: 0.40 Total: 12.67 kcal Atomic # 6 Polarization: -41.03 SS G_CDS: 3.68 Total: -37.35 kcal Atomic # 7 Polarization: -67.68 SS G_CDS: -4.69 Total: -72.38 kcal Atomic # 8 Polarization: -7.76 SS G_CDS: -1.25 Total: -9.01 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.01 kcal Atomic # 16 Polarization: -10.78 SS G_CDS: -1.21 Total: -11.99 kcal Total: -71.00 -1.04 -72.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599536805.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.504 kcal (2) G-P(sol) polarization free energy of solvation -70.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.80 seconds