Wall clock time and date at job start Wed Apr 15 2020 11:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86799 * 119.99542 * 2 1 4 4 H 1.48503 * 109.47061 * 269.99722 * 3 2 1 5 5 H 1.48500 * 109.47314 * 30.00118 * 3 2 1 6 6 H 1.48500 * 109.46815 * 150.00447 * 3 2 1 7 7 C 1.37874 * 119.99862 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99223 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00477 * 359.97438 * 7 2 1 10 10 N 1.46501 * 109.47284 * 180.02562 * 9 7 2 11 11 C 1.34777 * 119.99949 * 179.97438 * 10 9 7 12 12 O 1.21277 * 120.00010 * 5.09910 * 11 10 9 13 13 C 1.50701 * 119.99665 * 185.08465 * 11 10 9 14 14 H 1.08998 * 109.39940 * 335.67888 * 13 11 10 15 15 C 1.53075 * 109.43456 * 215.78874 * 13 11 10 16 16 C 1.53402 * 108.30327 * 191.75322 * 15 13 11 17 17 O 1.42841 * 108.35853 * 64.71107 * 16 15 13 18 18 C 1.35903 * 117.84640 * 310.80013 * 17 16 15 19 19 C 1.39334 * 118.49583 * 197.09847 * 18 17 16 20 20 F 1.35100 * 119.91067 * 0.27310 * 19 18 17 21 21 C 1.38134 * 120.17814 * 180.02562 * 19 18 17 22 22 C 1.38298 * 119.92852 * 0.48067 * 21 19 18 23 23 C 1.38075 * 119.99771 * 359.43689 * 22 21 19 24 24 C 1.38280 * 121.81354 * 17.23893 * 18 17 16 25 25 H 0.96987 * 120.00196 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.46786 * 60.00844 * 9 7 2 27 27 H 1.09000 * 109.47603 * 300.00808 * 9 7 2 28 28 H 0.96999 * 119.99995 * 0.02562 * 10 9 7 29 29 H 1.09003 * 109.69859 * 311.46422 * 15 13 11 30 30 H 1.09004 * 109.69392 * 72.05236 * 15 13 11 31 31 H 1.09001 * 109.68370 * 184.42194 * 16 15 13 32 32 H 1.08994 * 109.68881 * 304.95307 * 16 15 13 33 33 H 1.08007 * 120.03855 * 180.26961 * 21 19 18 34 34 H 1.08003 * 120.00273 * 179.71537 * 22 21 19 35 35 H 1.08001 * 119.81927 * 180.30159 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 7 2.2032 -3.6126 -0.0005 11 6 1.7540 -4.8833 0.0000 12 8 0.5655 -5.1064 -0.0929 13 6 2.7286 -6.0270 0.1157 14 1 3.7082 -5.7049 -0.2372 15 6 2.2404 -7.2004 -0.7375 16 6 3.0735 -8.4372 -0.3774 17 8 2.8039 -8.7809 0.9826 18 6 2.8672 -7.7913 1.9119 19 6 2.9689 -8.1466 3.2554 20 9 3.0079 -9.4506 3.6063 21 6 3.0350 -7.1690 4.2291 22 6 2.9903 -5.8340 3.8707 23 6 2.8913 -5.4794 2.5399 24 6 2.8305 -6.4551 1.5577 25 1 -0.4850 0.8399 -0.0004 26 1 0.6243 -2.5567 -0.8904 27 1 0.6247 -2.5571 0.8896 28 1 3.1569 -3.4354 -0.0002 29 1 1.1879 -7.3930 -0.5295 30 1 2.3696 -6.9653 -1.7940 31 1 2.7978 -9.2675 -1.0275 32 1 4.1335 -8.2135 -0.4971 33 1 3.1182 -7.4469 5.2694 34 1 3.0373 -5.0687 4.6313 35 1 2.8615 -4.4360 2.2629 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001139418992.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:17 Heat of formation + Delta-G solvation = -104.471020 kcal Electronic energy + Delta-G solvation = -21457.272133 eV Core-core repulsion = 17948.518710 eV Total energy + Delta-G solvation = -3508.753423 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.106 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.78810 -40.96232 -38.71111 -37.57669 -34.38726 -33.97537 -32.37156 -30.88874 -29.88445 -27.82811 -26.06705 -24.04941 -23.03459 -22.25623 -20.59600 -19.66166 -18.17920 -17.47396 -17.09862 -16.77095 -15.93001 -15.76089 -15.30410 -15.24303 -14.94518 -14.65893 -14.45054 -14.21714 -13.49068 -13.29915 -13.03228 -12.92275 -12.35437 -12.13877 -12.06007 -11.84489 -11.62119 -11.12592 -11.01402 -10.96354 -10.93617 -10.75830 -10.37778 -9.47329 -9.31025 -8.80566 -8.68777 -8.24405 -7.99879 -6.22377 -4.30024 1.03550 1.18914 3.05096 3.12368 3.20273 3.26728 3.28683 3.45529 3.93045 4.18364 4.30773 4.47553 4.57246 4.68573 4.90548 5.00720 5.08567 5.14001 5.19284 5.22120 5.33378 5.36025 5.59255 5.72496 5.87216 6.02637 6.09223 6.21688 6.37974 6.60339 7.21069 7.23227 7.30753 7.43199 7.58144 7.89820 8.49702 8.69209 8.96079 9.36869 10.87720 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.025905 B = 0.004289 C = 0.003899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.631554 B = 6526.899802 C = 7180.275965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.065 3.935 3 Si 0.904 3.096 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.545 4.545 8 H 0.063 0.937 9 C 0.249 3.751 10 N -0.710 5.710 11 C 0.510 3.490 12 O -0.544 6.544 13 C -0.067 4.067 14 H 0.102 0.898 15 C -0.148 4.148 16 C 0.064 3.936 17 O -0.309 6.309 18 C 0.108 3.892 19 C 0.065 3.935 20 F -0.135 7.135 21 C -0.123 4.123 22 C -0.120 4.120 23 C -0.087 4.087 24 C -0.118 4.118 25 H 0.266 0.734 26 H 0.028 0.972 27 H 0.027 0.973 28 H 0.391 0.609 29 H 0.096 0.904 30 H 0.090 0.910 31 H 0.113 0.887 32 H 0.067 0.933 33 H 0.141 0.859 34 H 0.137 0.863 35 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.672 -14.111 3.381 17.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.139 4.139 3 Si 0.731 3.269 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.583 4.583 8 H 0.081 0.919 9 C 0.128 3.872 10 N -0.358 5.358 11 C 0.293 3.707 12 O -0.423 6.423 13 C -0.088 4.088 14 H 0.120 0.880 15 C -0.185 4.185 16 C -0.011 4.011 17 O -0.223 6.223 18 C 0.061 3.939 19 C 0.045 3.955 20 F -0.114 7.114 21 C -0.141 4.141 22 C -0.138 4.138 23 C -0.105 4.105 24 C -0.119 4.119 25 H 0.076 0.924 26 H 0.046 0.954 27 H 0.045 0.955 28 H 0.224 0.776 29 H 0.114 0.886 30 H 0.109 0.891 31 H 0.131 0.869 32 H 0.085 0.915 33 H 0.159 0.841 34 H 0.155 0.845 35 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 8.584 -14.353 3.358 17.057 hybrid contribution 0.878 1.091 -0.104 1.405 sum 9.462 -13.261 3.254 16.613 Atomic orbital electron populations 1.69969 1.06130 1.27403 1.48672 1.24947 0.94896 0.99464 0.94606 0.86418 0.79623 0.82633 0.78262 1.20448 1.20979 1.19715 1.21199 0.93248 0.90363 1.53514 0.91853 1.19145 0.88272 0.81867 0.97872 1.46572 1.11209 1.05972 1.72082 1.19986 0.88955 0.83979 0.77737 1.90672 1.16850 1.84577 1.50158 1.20231 1.00454 0.95951 0.92213 0.88003 1.22176 1.02441 0.93335 1.00597 1.23057 0.99362 0.98720 0.79984 1.86032 1.85643 1.33469 1.17176 1.18556 0.99826 0.87570 0.87908 1.17078 1.09194 0.78842 0.90356 1.91477 1.94325 1.33217 1.92366 1.20986 1.01907 0.92323 0.98931 1.20908 1.01286 0.95273 0.96348 1.21269 0.96848 1.00063 0.92303 1.19292 1.05727 0.91457 0.95462 0.92379 0.95402 0.95472 0.77585 0.88576 0.89101 0.86915 0.91506 0.84149 0.84494 0.84235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.47 13.29 55.43 0.74 -24.73 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.90 20.27 29.54 -169.99 -5.02 15.25 16 4 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 7 C -0.54 -14.19 9.28 -34.44 -0.32 -14.51 16 8 H 0.06 1.53 7.60 -52.48 -0.40 1.13 16 9 C 0.25 6.32 5.43 -5.20 -0.03 6.29 16 10 N -0.71 -13.99 4.83 -61.47 -0.30 -14.29 16 11 C 0.51 9.70 5.79 -10.98 -0.06 9.64 16 12 O -0.54 -12.79 16.07 5.56 0.09 -12.70 16 13 C -0.07 -0.95 2.71 -92.85 -0.25 -1.20 16 14 H 0.10 1.15 8.08 -51.93 -0.42 0.73 16 15 C -0.15 -1.85 5.35 -26.48 -0.14 -2.00 16 16 C 0.06 0.66 7.03 37.37 0.26 0.93 16 17 O -0.31 -4.33 10.09 -19.44 -0.20 -4.53 16 18 C 0.11 1.58 6.48 -39.16 -0.25 1.33 16 19 C 0.07 0.91 7.30 -39.21 -0.29 0.63 16 20 F -0.14 -1.95 17.05 2.25 0.04 -1.92 16 21 C -0.12 -1.47 10.02 -39.60 -0.40 -1.86 16 22 C -0.12 -1.47 10.04 -39.62 -0.40 -1.87 16 23 C -0.09 -1.24 9.10 -39.52 -0.36 -1.60 16 24 C -0.12 -1.73 5.42 -104.45 -0.57 -2.29 16 25 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 26 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.39 6.50 8.28 -40.82 -0.34 6.16 16 29 H 0.10 1.45 7.46 -51.93 -0.39 1.07 16 30 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 31 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.14 1.29 8.06 -52.48 -0.42 0.87 16 34 H 0.14 1.36 8.06 -52.48 -0.42 0.93 16 35 H 0.14 2.08 6.80 -52.49 -0.36 1.73 16 LS Contribution 304.94 15.07 4.60 4.60 Total: -1.00 -32.14 304.94 -6.95 -39.09 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -3.99 Total: 4.09 kcal Atomic # 6 Polarization: -1.97 SS G_CDS: -2.90 Total: -4.87 kcal Atomic # 7 Polarization: -39.46 SS G_CDS: 0.44 Total: -39.02 kcal Atomic # 8 Polarization: -17.12 SS G_CDS: -0.11 Total: -17.23 kcal Atomic # 9 Polarization: -1.95 SS G_CDS: 0.04 Total: -1.92 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -32.14 -6.95 -39.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139418992.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.377 kcal (2) G-P(sol) polarization free energy of solvation -32.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds