Wall clock time and date at job start Wed Apr 15 2020 11:43:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86796 * 119.99709 * 2 1 4 4 H 1.48503 * 109.47258 * 266.90507 * 3 2 1 5 5 H 1.48496 * 109.47550 * 26.90867 * 3 2 1 6 6 H 1.48500 * 109.46820 * 146.90955 * 3 2 1 7 7 C 1.37876 * 119.99948 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00252 * 3.73641 * 7 2 1 9 9 C 1.50694 * 119.99924 * 183.74185 * 7 2 1 10 10 N 1.46504 * 110.01900 * 65.27003 * 9 7 2 11 11 S 1.65603 * 119.99731 * 53.88580 * 10 9 7 12 12 O 1.42092 * 104.27509 * 180.69562 * 11 10 9 13 13 O 1.42103 * 104.27379 * 308.55197 * 11 10 9 14 14 C 1.81396 * 104.45052 * 64.62071 * 11 10 9 15 15 C 1.53007 * 109.47030 * 172.85533 * 14 11 10 16 16 C 1.53000 * 109.46967 * 180.02562 * 15 14 11 17 17 F 1.39896 * 109.46940 * 180.02562 * 16 15 14 18 18 C 1.54263 * 110.07521 * 186.69166 * 9 7 2 19 19 C 1.54889 * 104.19639 * 95.69375 * 18 9 7 20 20 C 1.54883 * 102.74642 * 37.94553 * 19 18 9 21 21 C 1.53877 * 110.03235 * 303.88249 * 9 7 2 22 22 H 0.96996 * 120.00210 * 359.97438 * 1 2 3 23 23 H 0.96992 * 120.00010 * 233.87836 * 10 9 7 24 24 H 1.08998 * 109.47438 * 292.85533 * 14 11 10 25 25 H 1.09006 * 109.47101 * 52.85879 * 14 11 10 26 26 H 1.08998 * 109.47010 * 300.00262 * 15 14 11 27 27 H 1.08998 * 109.46945 * 60.00529 * 15 14 11 28 28 H 1.08998 * 109.47376 * 299.99923 * 16 15 14 29 29 H 1.09006 * 109.47226 * 60.00308 * 16 15 14 30 30 H 1.08998 * 110.48776 * 214.37358 * 18 9 7 31 31 H 1.09007 * 110.48375 * 337.01509 * 18 9 7 32 32 H 1.09001 * 110.75379 * 279.62636 * 19 18 9 33 33 H 1.09005 * 110.91210 * 156.33008 * 19 18 9 34 34 H 1.09005 * 110.48446 * 203.37623 * 20 19 18 35 35 H 1.09003 * 110.48698 * 80.73929 * 20 19 18 36 36 H 1.09003 * 110.02953 * 359.95020 * 21 9 7 37 37 H 1.08995 * 110.03767 * 121.38296 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.5621 2.0087 -1.3980 5 1 1.4155 2.6707 0.6336 6 1 3.5125 1.4599 0.7644 7 6 2.0046 -1.1940 -0.0005 8 1 1.4663 -2.1284 -0.0619 9 6 3.5091 -1.1955 0.0846 10 7 3.9387 -0.6618 1.3796 11 16 3.3470 -1.3149 2.7817 12 8 3.9593 -0.5495 3.8104 13 8 1.9372 -1.3081 2.6038 14 6 3.9793 -3.0151 2.7911 15 6 3.6470 -3.6753 4.1308 16 6 4.1808 -5.1092 4.1390 17 9 3.8766 -5.7130 5.3637 18 6 4.0487 -2.6286 -0.1015 19 6 4.4046 -2.7080 -1.6069 20 6 4.9818 -1.3002 -1.8963 21 6 4.1025 -0.3508 -1.0565 22 1 -0.4850 0.8400 0.0004 23 1 4.5696 0.0740 1.4158 24 1 3.5150 -3.5799 1.9827 25 1 5.0602 -3.0016 2.6509 26 1 4.1113 -3.1106 4.9392 27 1 2.5662 -3.6889 4.2710 28 1 3.7169 -5.6742 3.3305 29 1 5.2618 -5.0953 3.9989 30 1 4.9379 -2.7839 0.5094 31 1 3.2806 -3.3608 0.1481 32 1 3.5122 -2.8903 -2.2057 33 1 5.1543 -3.4779 -1.7894 34 1 4.8948 -1.0628 -2.9566 35 1 6.0218 -1.2409 -1.5752 36 1 3.3021 0.0595 -1.6724 37 1 4.7100 0.4562 -0.6469 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001189947988.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:20 Heat of formation + Delta-G solvation = -121.092133 kcal Electronic energy + Delta-G solvation = -21593.920621 eV Core-core repulsion = 18219.890404 eV Total energy + Delta-G solvation = -3374.030217 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -47.65039 -38.26608 -36.11669 -34.89117 -34.34298 -32.93861 -31.90817 -28.48764 -27.37729 -26.69797 -23.86236 -22.19328 -20.32077 -19.37508 -18.53268 -17.13885 -16.56444 -16.31438 -16.19081 -15.44136 -15.29814 -14.83469 -14.63693 -14.56543 -14.10953 -13.63466 -13.04780 -12.59994 -12.45626 -12.18955 -11.82013 -11.70932 -11.51465 -11.43501 -11.16604 -11.03008 -10.94750 -10.78628 -10.59988 -10.43560 -10.31733 -10.06894 -9.98968 -9.87787 -9.72080 -9.21053 -8.51588 -8.17772 -6.09473 -4.09233 1.09340 3.24719 3.33804 3.41885 3.69246 4.35359 4.42240 4.58999 4.69165 4.79995 4.95023 4.96870 5.11352 5.29486 5.38745 5.49091 5.50461 5.56791 5.65792 5.85407 5.96549 6.03364 6.14698 6.18755 6.26436 6.32290 6.41919 6.45297 6.65119 6.73257 6.91106 7.10138 7.64579 8.05246 8.42882 8.95242 9.54616 11.02897 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.019723 B = 0.007705 C = 0.006577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.313909 B = 3633.161769 C = 4256.324184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.100 3.900 3 Si 0.871 3.129 4 H -0.282 1.282 5 H -0.298 1.298 6 H -0.252 1.252 7 C -0.507 4.507 8 H 0.084 0.916 9 C 0.263 3.737 10 N -1.105 6.105 11 S 2.596 3.404 12 O -0.997 6.997 13 O -0.904 6.904 14 C -0.648 4.648 15 C -0.143 4.143 16 C 0.070 3.930 17 F -0.221 7.221 18 C -0.138 4.138 19 C -0.113 4.113 20 C -0.118 4.118 21 C -0.131 4.131 22 H 0.264 0.736 23 H 0.395 0.605 24 H 0.140 0.860 25 H 0.123 0.877 26 H 0.085 0.915 27 H 0.088 0.912 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.054 0.946 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.053 0.947 34 H 0.057 0.943 35 H 0.055 0.945 36 H 0.079 0.921 37 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.045 -6.624 0.811 12.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.107 4.107 3 Si 0.700 3.300 4 H -0.209 1.209 5 H -0.226 1.226 6 H -0.176 1.176 7 C -0.548 4.548 8 H 0.102 0.898 9 C 0.179 3.821 10 N -0.865 5.865 11 S 2.687 3.313 12 O -0.987 6.987 13 O -0.893 6.893 14 C -0.773 4.773 15 C -0.182 4.182 16 C 0.014 3.986 17 F -0.202 7.202 18 C -0.177 4.177 19 C -0.151 4.151 20 C -0.156 4.156 21 C -0.171 4.171 22 H 0.074 0.926 23 H 0.229 0.771 24 H 0.158 0.842 25 H 0.141 0.859 26 H 0.103 0.897 27 H 0.107 0.893 28 H 0.098 0.902 29 H 0.094 0.906 30 H 0.073 0.927 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.098 0.902 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 10.219 -6.281 1.510 12.090 hybrid contribution 1.098 0.773 -0.263 1.369 sum 11.318 -5.509 1.247 12.649 Atomic orbital electron populations 1.69886 1.06538 1.27066 1.46846 1.24863 0.94358 0.98872 0.92568 0.87311 0.80884 0.83901 0.77929 1.20854 1.22573 1.17603 1.21033 0.87139 0.95243 1.51341 0.89805 1.18918 0.95095 0.88598 0.79508 1.56967 1.61430 1.46642 1.21460 1.05870 0.76014 0.76248 0.73177 1.93490 1.79521 1.67769 1.57967 1.93771 1.26944 1.84600 1.84006 1.31032 1.12874 1.28760 1.04645 1.21818 1.03676 0.96626 0.96073 1.21973 1.01429 0.92679 0.82476 1.92757 1.95070 1.85024 1.47341 1.23090 0.99316 0.98696 0.96552 1.22325 1.00147 0.96014 0.96611 1.22277 0.98257 0.95810 0.99223 1.22769 0.98714 0.97716 0.97888 0.92595 0.77131 0.84177 0.85883 0.89666 0.89346 0.90250 0.90605 0.92714 0.91227 0.90891 0.92864 0.92423 0.92666 0.90233 0.93065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.94 13.96 55.43 0.77 -25.16 16 2 C 0.10 2.76 4.91 -17.82 -0.09 2.68 16 3 Si 0.87 21.05 23.64 -169.99 -4.02 17.03 16 4 H -0.28 -6.50 6.91 56.52 0.39 -6.11 16 5 H -0.30 -7.58 7.11 56.52 0.40 -7.18 16 6 H -0.25 -5.49 4.48 56.52 0.25 -5.24 16 7 C -0.51 -12.82 6.30 -34.44 -0.22 -13.04 16 8 H 0.08 2.32 7.74 -52.49 -0.41 1.91 16 9 C 0.26 5.26 0.58 -131.85 -0.08 5.18 16 10 N -1.11 -21.41 3.80 0.51 0.00 -21.41 16 11 S 2.60 50.89 5.41 -107.50 -0.58 50.31 16 12 O -1.00 -21.31 18.08 -57.54 -1.04 -22.35 16 13 O -0.90 -22.18 15.26 -57.54 -0.88 -23.06 16 14 C -0.65 -9.05 4.41 37.16 0.16 -8.89 16 15 C -0.14 -1.88 5.68 -26.73 -0.15 -2.04 16 16 C 0.07 0.77 7.55 37.16 0.28 1.06 16 17 F -0.22 -2.93 17.36 2.25 0.04 -2.89 16 18 C -0.14 -2.22 4.12 -25.07 -0.10 -2.32 16 19 C -0.11 -1.66 6.91 -24.74 -0.17 -1.83 16 20 C -0.12 -1.76 6.83 -25.08 -0.17 -1.93 16 21 C -0.13 -2.44 4.11 -25.61 -0.11 -2.55 16 22 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 23 H 0.39 7.08 6.87 -34.47 -0.24 6.84 16 24 H 0.14 1.87 5.74 -51.93 -0.30 1.57 16 25 H 0.12 1.38 7.72 -51.92 -0.40 0.98 16 26 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 27 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 28 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.05 0.74 6.66 -51.93 -0.35 0.39 16 31 H 0.07 1.13 6.42 -51.92 -0.33 0.80 16 32 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.08 1.65 5.52 -51.93 -0.29 1.37 16 37 H 0.05 0.90 6.33 -51.93 -0.33 0.57 16 LS Contribution 293.83 15.07 4.43 4.43 Total: -1.00 -32.83 293.83 -7.23 -40.06 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -5.31 Total: 6.73 kcal Atomic # 6 Polarization: -23.03 SS G_CDS: -0.64 Total: -23.67 kcal Atomic # 7 Polarization: -47.35 SS G_CDS: 0.78 Total: -46.57 kcal Atomic # 8 Polarization: -43.49 SS G_CDS: -1.92 Total: -45.41 kcal Atomic # 9 Polarization: -2.93 SS G_CDS: 0.04 Total: -2.89 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.02 Total: 17.03 kcal Atomic # 16 Polarization: 50.89 SS G_CDS: -0.58 Total: 50.31 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -32.83 -7.23 -40.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189947988.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.034 kcal (2) G-P(sol) polarization free energy of solvation -32.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds