Wall clock time and date at job start Wed Apr 15 2020 11:43:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86796 * 119.99709 * 2 1 4 4 H 1.48503 * 109.47258 * 266.90507 * 3 2 1 5 5 H 1.48496 * 109.47550 * 26.90867 * 3 2 1 6 6 H 1.48500 * 109.46820 * 146.90955 * 3 2 1 7 7 C 1.37876 * 119.99948 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00252 * 3.73641 * 7 2 1 9 9 C 1.50694 * 119.99924 * 183.74185 * 7 2 1 10 10 N 1.46504 * 110.01900 * 65.27003 * 9 7 2 11 11 S 1.65603 * 119.99731 * 53.88580 * 10 9 7 12 12 O 1.42092 * 104.27509 * 180.69562 * 11 10 9 13 13 O 1.42103 * 104.27379 * 308.55197 * 11 10 9 14 14 C 1.81396 * 104.45052 * 64.62071 * 11 10 9 15 15 C 1.53007 * 109.47030 * 172.85533 * 14 11 10 16 16 C 1.53000 * 109.46967 * 180.02562 * 15 14 11 17 17 F 1.39896 * 109.46940 * 180.02562 * 16 15 14 18 18 C 1.54263 * 110.07521 * 186.69166 * 9 7 2 19 19 C 1.54889 * 104.19639 * 95.69375 * 18 9 7 20 20 C 1.54883 * 102.74642 * 37.94553 * 19 18 9 21 21 C 1.53877 * 110.03235 * 303.88249 * 9 7 2 22 22 H 0.96996 * 120.00210 * 359.97438 * 1 2 3 23 23 H 0.96992 * 120.00010 * 233.87836 * 10 9 7 24 24 H 1.08998 * 109.47438 * 292.85533 * 14 11 10 25 25 H 1.09006 * 109.47101 * 52.85879 * 14 11 10 26 26 H 1.08998 * 109.47010 * 300.00262 * 15 14 11 27 27 H 1.08998 * 109.46945 * 60.00529 * 15 14 11 28 28 H 1.08998 * 109.47376 * 299.99923 * 16 15 14 29 29 H 1.09006 * 109.47226 * 60.00308 * 16 15 14 30 30 H 1.08998 * 110.48776 * 214.37358 * 18 9 7 31 31 H 1.09007 * 110.48375 * 337.01509 * 18 9 7 32 32 H 1.09001 * 110.75379 * 279.62636 * 19 18 9 33 33 H 1.09005 * 110.91210 * 156.33008 * 19 18 9 34 34 H 1.09005 * 110.48446 * 203.37623 * 20 19 18 35 35 H 1.09003 * 110.48698 * 80.73929 * 20 19 18 36 36 H 1.09003 * 110.02953 * 359.95020 * 21 9 7 37 37 H 1.08995 * 110.03767 * 121.38296 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.5621 2.0087 -1.3980 5 1 1.4155 2.6707 0.6336 6 1 3.5125 1.4599 0.7644 7 6 2.0046 -1.1940 -0.0005 8 1 1.4663 -2.1284 -0.0619 9 6 3.5091 -1.1955 0.0846 10 7 3.9387 -0.6618 1.3796 11 16 3.3470 -1.3149 2.7817 12 8 3.9593 -0.5495 3.8104 13 8 1.9372 -1.3081 2.6038 14 6 3.9793 -3.0151 2.7911 15 6 3.6470 -3.6753 4.1308 16 6 4.1808 -5.1092 4.1390 17 9 3.8766 -5.7130 5.3637 18 6 4.0487 -2.6286 -0.1015 19 6 4.4046 -2.7080 -1.6069 20 6 4.9818 -1.3002 -1.8963 21 6 4.1025 -0.3508 -1.0565 22 1 -0.4850 0.8400 0.0004 23 1 4.5696 0.0740 1.4158 24 1 3.5150 -3.5799 1.9827 25 1 5.0602 -3.0016 2.6509 26 1 4.1113 -3.1106 4.9392 27 1 2.5662 -3.6889 4.2710 28 1 3.7169 -5.6742 3.3305 29 1 5.2618 -5.0953 3.9989 30 1 4.9379 -2.7839 0.5094 31 1 3.2806 -3.3608 0.1481 32 1 3.5122 -2.8903 -2.2057 33 1 5.1543 -3.4779 -1.7894 34 1 4.8948 -1.0628 -2.9566 35 1 6.0218 -1.2409 -1.5752 36 1 3.3021 0.0595 -1.6724 37 1 4.7100 0.4562 -0.6469 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001189947988.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:19 Heat of formation + Delta-G solvation = -147.259546 kcal Electronic energy + Delta-G solvation = -21595.055326 eV Core-core repulsion = 18219.890404 eV Total energy + Delta-G solvation = -3375.164921 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -48.57986 -39.72435 -37.78430 -36.61405 -35.44777 -34.55201 -33.73585 -29.78178 -29.04873 -27.77905 -25.55563 -23.23504 -21.62554 -20.86432 -20.13259 -18.82713 -18.02655 -17.51528 -17.51183 -16.86815 -16.61656 -16.33385 -15.98143 -15.71678 -15.54142 -14.91700 -14.82999 -14.11494 -13.90925 -13.53976 -13.30113 -13.09806 -12.82135 -12.79028 -12.75064 -12.62628 -12.52138 -12.21693 -12.09070 -11.70109 -11.57824 -11.47540 -11.44604 -11.24260 -11.14885 -11.03698 -10.55605 -9.78532 -8.18253 -6.18079 -0.42354 1.30438 1.35710 1.43476 2.13081 2.42308 3.00437 3.24169 3.53095 3.53522 3.75972 3.83258 4.00297 4.06409 4.17370 4.23566 4.29387 4.52561 4.63336 4.72006 4.74678 4.79668 4.93914 4.98554 5.03898 5.05302 5.13918 5.26850 5.32354 5.39382 5.59050 5.74012 5.83933 6.39604 6.55873 6.88999 7.50540 8.99194 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.019723 B = 0.007705 C = 0.006577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.313909 B = 3633.161769 C = 4256.324184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.040 3.960 3 Si 0.907 3.093 4 H -0.265 1.265 5 H -0.325 1.325 6 H -0.215 1.215 7 C -0.493 4.493 8 H 0.044 0.956 9 C 0.259 3.741 10 N -1.108 6.108 11 S 2.588 3.412 12 O -1.018 7.018 13 O -0.969 6.969 14 C -0.611 4.611 15 C -0.155 4.155 16 C 0.070 3.930 17 F -0.235 7.235 18 C -0.138 4.138 19 C -0.111 4.111 20 C -0.110 4.110 21 C -0.140 4.140 22 H 0.255 0.745 23 H 0.406 0.594 24 H 0.154 0.846 25 H 0.171 0.829 26 H 0.088 0.912 27 H 0.074 0.926 28 H 0.097 0.903 29 H 0.109 0.891 30 H 0.096 0.904 31 H 0.062 0.938 32 H 0.051 0.949 33 H 0.092 0.908 34 H 0.066 0.934 35 H 0.087 0.913 36 H 0.049 0.951 37 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.740 -8.444 0.634 17.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.160 4.160 3 Si 0.734 3.266 4 H -0.191 1.191 5 H -0.254 1.254 6 H -0.138 1.138 7 C -0.533 4.533 8 H 0.062 0.938 9 C 0.173 3.827 10 N -0.868 5.868 11 S 2.686 3.314 12 O -1.009 7.009 13 O -0.959 6.959 14 C -0.743 4.743 15 C -0.194 4.194 16 C 0.014 3.986 17 F -0.216 7.216 18 C -0.177 4.177 19 C -0.149 4.149 20 C -0.148 4.148 21 C -0.180 4.180 22 H 0.064 0.936 23 H 0.241 0.759 24 H 0.172 0.828 25 H 0.188 0.812 26 H 0.107 0.893 27 H 0.093 0.907 28 H 0.115 0.885 29 H 0.127 0.873 30 H 0.114 0.886 31 H 0.081 0.919 32 H 0.070 0.930 33 H 0.110 0.890 34 H 0.085 0.915 35 H 0.105 0.895 36 H 0.068 0.932 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 14.926 -8.036 1.295 17.001 hybrid contribution -0.303 1.169 -0.104 1.212 sum 14.623 -6.867 1.191 16.199 Atomic orbital electron populations 1.70061 1.08552 1.27005 1.51919 1.25610 0.94743 1.02341 0.93266 0.86731 0.80901 0.79908 0.79039 1.19095 1.25420 1.13755 1.21307 0.90438 0.92940 1.48647 0.93797 1.18932 0.91735 0.92052 0.79957 1.56346 1.61369 1.47863 1.21214 1.05338 0.74840 0.78550 0.72693 1.93465 1.79238 1.69935 1.58242 1.93727 1.30920 1.86668 1.84572 1.30608 1.15500 1.22228 1.05940 1.21963 1.03310 0.98673 0.95451 1.22135 1.03512 0.90707 0.82229 1.92734 1.95329 1.85076 1.48497 1.23112 1.00598 0.95286 0.98696 1.22345 1.00465 0.97221 0.94883 1.22280 0.98960 0.94370 0.99147 1.22758 0.98768 0.98925 0.97530 0.93580 0.75906 0.82835 0.81151 0.89328 0.90744 0.88485 0.87275 0.88592 0.91909 0.92976 0.88979 0.91485 0.89488 0.93244 0.91653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.12 13.96 21.45 0.30 -59.82 16 2 C 0.04 2.31 4.91 84.65 0.42 2.73 16 3 Si 0.91 44.15 23.64 68.60 1.62 45.77 16 4 H -0.27 -12.02 6.91 99.48 0.69 -11.34 16 5 H -0.32 -17.10 7.11 99.48 0.71 -16.39 16 6 H -0.22 -8.95 4.48 99.48 0.45 -8.51 16 7 C -0.49 -25.72 6.30 25.60 0.16 -25.56 16 8 H 0.04 2.57 7.74 -2.91 -0.02 2.55 16 9 C 0.26 9.84 0.58 3.58 0.00 9.84 16 10 N -1.11 -40.18 3.80 -152.30 -0.58 -40.76 16 11 S 2.59 97.95 5.41 -56.49 -0.31 97.64 16 12 O -1.02 -42.02 18.08 -127.65 -2.31 -44.33 16 13 O -0.97 -49.09 15.26 -127.65 -1.95 -51.04 16 14 C -0.61 -14.43 4.41 71.98 0.32 -14.11 16 15 C -0.15 -3.57 5.68 30.60 0.17 -3.40 16 16 C 0.07 1.22 7.55 71.98 0.54 1.76 16 17 F -0.24 -5.53 17.36 44.97 0.78 -4.75 16 18 C -0.14 -3.90 4.12 31.67 0.13 -3.77 16 19 C -0.11 -2.78 6.91 31.88 0.22 -2.56 16 20 C -0.11 -2.76 6.83 31.67 0.22 -2.54 16 21 C -0.14 -4.84 4.11 31.32 0.13 -4.71 16 22 H 0.26 15.82 8.31 -92.71 -0.77 15.05 16 23 H 0.41 13.18 6.87 -96.75 -0.66 12.51 16 24 H 0.15 3.43 5.74 -2.39 -0.01 3.41 16 25 H 0.17 2.56 7.72 -2.39 -0.02 2.54 16 26 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 27 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.11 1.25 8.14 -2.38 -0.02 1.23 16 30 H 0.10 1.93 6.66 -2.39 -0.02 1.91 16 31 H 0.06 1.86 6.42 -2.38 -0.02 1.85 16 32 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.09 1.65 8.14 -2.38 -0.02 1.64 16 34 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 35 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.05 2.00 5.52 -2.39 -0.01 1.99 16 37 H 0.06 2.05 6.33 -2.39 -0.02 2.03 16 Total: -1.00 -79.16 293.83 0.01 -79.16 By element: Atomic # 1 Polarization: 20.33 SS G_CDS: 0.13 Total: 20.46 kcal Atomic # 6 Polarization: -44.64 SS G_CDS: 2.31 Total: -42.33 kcal Atomic # 7 Polarization: -100.30 SS G_CDS: -0.28 Total: -100.58 kcal Atomic # 8 Polarization: -91.11 SS G_CDS: -4.26 Total: -95.37 kcal Atomic # 9 Polarization: -5.53 SS G_CDS: 0.78 Total: -4.75 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 1.62 Total: 45.77 kcal Atomic # 16 Polarization: 97.95 SS G_CDS: -0.31 Total: 97.64 kcal Total: -79.16 0.01 -79.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189947988.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.104 kcal (2) G-P(sol) polarization free energy of solvation -79.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds