Wall clock time and date at job start Wed Apr 15 2020 11:43:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31567 * 1 3 3 Si 1.86805 * 120.00171 * 2 1 4 4 H 1.48504 * 109.47061 * 269.99928 * 3 2 1 5 5 H 1.48499 * 109.47023 * 29.99268 * 3 2 1 6 6 H 1.48493 * 109.47563 * 150.00076 * 3 2 1 7 7 C 1.38630 * 120.00483 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99639 * 359.97438 * 7 2 1 9 9 O 1.34803 * 120.00630 * 180.02562 * 7 2 1 10 10 C 1.35632 * 117.00137 * 185.05370 * 9 7 2 11 11 C 1.38731 * 120.14801 * 354.39612 * 10 9 7 12 12 C 1.38120 * 120.06650 * 180.27579 * 11 10 9 13 13 C 1.38493 * 120.37623 * 359.74374 * 12 11 10 14 14 C 1.37945 * 120.29447 * 359.97438 * 13 12 11 15 15 C 1.39523 * 119.92242 * 0.02562 * 14 13 12 16 16 C 1.47752 * 120.17929 * 179.97438 * 15 14 13 17 17 C 1.35723 * 125.22748 * 319.99600 * 16 15 14 18 18 C 1.46167 * 106.93925 * 180.22687 * 17 16 15 19 19 C 1.39818 * 133.81203 * 180.49004 * 18 17 16 20 20 C 1.36593 * 119.76776 * 179.59867 * 19 18 17 21 21 C 1.38847 * 120.52980 * 359.72693 * 20 19 18 22 22 C 1.37800 * 120.68584 * 359.97197 * 21 20 19 23 23 C 1.39090 * 119.81730 * 0.02798 * 22 21 20 24 24 N 1.37595 * 125.22623 * 139.97912 * 16 15 14 25 25 H 0.96993 * 125.10512 * 0.02562 * 24 16 15 26 26 H 0.96995 * 119.99944 * 0.02562 * 1 2 3 27 27 H 1.07991 * 119.97000 * 0.02562 * 11 10 9 28 28 H 1.08006 * 119.81313 * 179.76235 * 12 11 10 29 29 H 1.07999 * 119.85436 * 180.02562 * 13 12 11 30 30 H 1.08004 * 120.03631 * 180.02562 * 14 13 12 31 31 H 1.08004 * 126.52582 * 359.95780 * 17 16 15 32 32 H 1.08007 * 120.11458 * 359.30680 * 19 18 17 33 33 H 1.07997 * 119.73870 * 179.74340 * 20 19 18 34 34 H 1.07995 * 119.65393 * 179.97438 * 21 20 19 35 35 H 1.08001 * 120.08638 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 2.4973 2.0464 -1.4001 5 1 1.4471 2.6527 0.6999 6 1 3.5473 1.4403 0.7000 7 6 2.0089 -1.2005 0.0005 8 1 1.4689 -2.1359 0.0014 9 8 3.3570 -1.2005 0.0011 10 6 3.9728 -2.4044 -0.1049 11 6 3.2253 -3.5730 -0.0907 12 6 3.8546 -4.7982 -0.1929 13 6 5.2322 -4.8699 -0.3155 14 6 5.9898 -3.7173 -0.3371 15 6 5.3669 -2.4730 -0.2347 16 6 6.1729 -1.2349 -0.2567 17 6 7.3696 -1.0686 0.3617 18 6 7.8056 0.2988 0.0849 19 6 8.9366 1.0433 0.4332 20 6 9.0590 2.3332 0.0008 21 6 8.0717 2.9098 -0.7869 22 6 6.9516 2.1926 -1.1474 23 6 6.8049 0.8775 -0.7190 24 7 5.8257 -0.0733 -0.9075 25 1 5.0135 0.0566 -1.4216 26 1 -0.4850 0.8400 -0.0004 27 1 2.1506 -3.5249 0.0045 28 1 3.2690 -5.7056 -0.1776 29 1 5.7155 -5.8324 -0.3953 30 1 7.0638 -3.7780 -0.4333 31 1 7.8969 -1.8049 0.9501 32 1 9.7086 0.6016 1.0460 33 1 9.9309 2.9092 0.2736 34 1 8.1827 3.9308 -1.1206 35 1 6.1897 2.6505 -1.7608 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243107255.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:32 Heat of formation + Delta-G solvation = 36.035867 kcal Electronic energy + Delta-G solvation = -20591.651079 eV Core-core repulsion = 17519.759716 eV Total energy + Delta-G solvation = -3071.891363 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.100 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.17125 -40.79862 -38.39216 -37.63001 -34.55457 -33.14597 -32.30751 -30.93662 -30.10960 -28.89467 -27.28272 -24.57542 -23.18389 -22.94214 -22.06552 -21.30630 -19.83976 -19.28701 -18.49279 -17.26595 -16.72468 -16.58630 -16.02899 -15.82681 -15.50449 -15.32472 -15.22193 -14.90100 -14.67654 -14.31255 -14.17887 -14.02762 -13.61613 -13.25917 -12.77266 -12.65589 -12.57090 -12.45776 -12.31264 -12.09516 -11.75650 -11.39728 -11.01691 -10.73731 -9.97834 -9.30656 -8.92869 -8.60005 -8.44351 -6.30357 -0.06846 0.51969 0.62969 0.77041 1.17391 1.19828 1.38756 1.84927 2.13883 2.21106 2.71031 2.94626 3.02141 3.07849 3.64865 3.86367 4.10469 4.18301 4.22970 4.30157 4.44547 4.50122 4.56034 4.58261 4.66682 4.87413 4.97874 5.05782 5.13059 5.17814 5.32593 5.50210 5.59543 5.61020 5.69020 5.71818 5.81413 5.89338 5.97682 6.15815 6.29756 6.55211 6.75184 7.48182 8.51523 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.013022 B = 0.007890 C = 0.005055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2149.764768 B = 3547.782785 C = 5537.220954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.021 3.979 3 Si 0.950 3.050 4 H -0.260 1.260 5 H -0.270 1.270 6 H -0.269 1.269 7 C -0.395 4.395 8 H 0.087 0.913 9 O -0.235 6.235 10 C 0.131 3.869 11 C -0.239 4.239 12 C -0.065 4.065 13 C -0.176 4.176 14 C -0.046 4.046 15 C -0.126 4.126 16 C 0.134 3.866 17 C -0.206 4.206 18 C -0.126 4.126 19 C -0.078 4.078 20 C -0.149 4.149 21 C -0.100 4.100 22 C -0.155 4.155 23 C 0.068 3.932 24 N -0.593 5.593 25 H 0.409 0.591 26 H 0.285 0.715 27 H 0.113 0.887 28 H 0.146 0.854 29 H 0.162 0.838 30 H 0.157 0.843 31 H 0.169 0.831 32 H 0.146 0.854 33 H 0.155 0.845 34 H 0.152 0.848 35 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.388 -1.195 -1.258 17.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.179 4.179 3 Si 0.773 3.227 4 H -0.185 1.185 5 H -0.195 1.195 6 H -0.194 1.194 7 C -0.471 4.471 8 H 0.104 0.896 9 O -0.142 6.142 10 C 0.081 3.919 11 C -0.258 4.258 12 C -0.083 4.083 13 C -0.195 4.195 14 C -0.064 4.064 15 C -0.128 4.128 16 C 0.026 3.974 17 C -0.230 4.230 18 C -0.131 4.131 19 C -0.096 4.096 20 C -0.168 4.168 21 C -0.119 4.119 22 C -0.176 4.176 23 C -0.039 4.039 24 N -0.194 5.194 25 H 0.245 0.755 26 H 0.095 0.905 27 H 0.131 0.869 28 H 0.164 0.836 29 H 0.179 0.821 30 H 0.175 0.825 31 H 0.186 0.814 32 H 0.163 0.837 33 H 0.172 0.828 34 H 0.170 0.830 35 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 17.156 -0.847 -1.300 17.226 hybrid contribution -1.486 0.686 -0.247 1.655 sum 15.670 -0.161 -1.547 15.747 Atomic orbital electron populations 1.69704 1.06598 1.29459 1.49909 1.25065 0.95678 1.01340 0.95801 0.85509 0.78965 0.78681 0.79500 1.18479 1.19487 1.19379 1.20701 0.77971 0.96136 1.52285 0.89564 1.83476 1.21233 1.27108 1.82392 1.19691 0.91936 0.85650 0.94610 1.21291 1.00419 0.93043 1.11019 1.21340 0.95691 0.96333 0.94894 1.21207 0.93093 0.99126 1.06034 1.21205 1.00803 0.89139 0.95259 1.17668 0.88300 0.92624 1.14182 1.18830 0.95029 0.85926 0.97574 1.21879 0.96601 0.96395 1.08121 1.19494 0.96514 0.94956 1.02126 1.20634 0.95533 0.94240 0.99228 1.20994 1.00516 0.95234 1.00040 1.21165 0.92514 1.00333 0.97872 1.20372 1.01070 0.91187 1.04968 1.18774 0.90840 0.92262 1.02051 1.42152 1.20066 1.10894 1.46283 0.75529 0.90548 0.86895 0.83610 0.82093 0.82540 0.81362 0.83662 0.82786 0.83030 0.86303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.05 13.96 21.61 0.30 -53.75 16 2 C 0.02 1.17 5.49 84.83 0.47 1.64 16 3 Si 0.95 45.58 28.62 68.60 1.96 47.54 16 4 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 5 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 6 H -0.27 -13.45 7.11 99.48 0.71 -12.74 16 7 C -0.39 -22.62 9.94 67.91 0.68 -21.94 16 8 H 0.09 5.15 5.44 -2.91 -0.02 5.14 16 9 O -0.24 -12.34 7.09 -21.17 -0.15 -12.49 16 10 C 0.13 5.98 6.66 22.86 0.15 6.13 16 11 C -0.24 -9.97 9.16 22.36 0.20 -9.77 16 12 C -0.06 -2.02 10.03 22.30 0.22 -1.80 16 13 C -0.18 -4.68 10.03 22.26 0.22 -4.46 16 14 C -0.05 -1.34 9.58 22.51 0.22 -1.13 16 15 C -0.13 -4.83 5.82 -19.98 -0.12 -4.95 16 16 C 0.13 5.17 6.31 40.17 0.25 5.43 16 17 C -0.21 -6.87 10.68 23.75 0.25 -6.62 16 18 C -0.13 -4.21 6.36 -20.21 -0.13 -4.33 16 19 C -0.08 -2.02 10.06 22.27 0.22 -1.80 16 20 C -0.15 -3.34 9.97 22.03 0.22 -3.12 16 21 C -0.10 -2.44 10.01 22.31 0.22 -2.22 16 22 C -0.16 -4.85 10.07 22.37 0.23 -4.63 16 23 C 0.07 2.50 7.26 39.04 0.28 2.78 16 24 N -0.59 -23.79 5.69 -176.98 -1.01 -24.80 16 25 H 0.41 17.08 8.33 -92.71 -0.77 16.31 16 26 H 0.28 15.51 8.31 -92.71 -0.77 14.74 16 27 H 0.11 5.18 5.64 -2.92 -0.02 5.17 16 28 H 0.15 3.60 8.06 -2.91 -0.02 3.57 16 29 H 0.16 2.89 8.06 -2.91 -0.02 2.87 16 30 H 0.16 3.52 7.98 -2.91 -0.02 3.49 16 31 H 0.17 4.51 8.06 -2.91 -0.02 4.49 16 32 H 0.15 2.86 8.06 -2.91 -0.02 2.84 16 33 H 0.15 2.31 8.06 -2.91 -0.02 2.28 16 34 H 0.15 2.66 8.06 -2.91 -0.02 2.64 16 35 H 0.12 3.47 8.06 -2.91 -0.02 3.45 16 Total: -1.00 -67.78 306.23 5.06 -62.72 By element: Atomic # 1 Polarization: 31.20 SS G_CDS: 0.36 Total: 31.56 kcal Atomic # 6 Polarization: -54.38 SS G_CDS: 3.60 Total: -50.79 kcal Atomic # 7 Polarization: -77.84 SS G_CDS: -0.71 Total: -78.55 kcal Atomic # 8 Polarization: -12.34 SS G_CDS: -0.15 Total: -12.49 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 1.96 Total: 47.54 kcal Total: -67.78 5.06 -62.72 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243107255.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.755 kcal (2) G-P(sol) polarization free energy of solvation -67.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.719 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds