Wall clock time and date at job start Wed Apr 15 2020 11:44:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 C 1.50700 * 109.46822 * 203.11266 * 3 2 1 5 5 C 1.38286 * 119.94305 * 89.99931 * 4 3 2 6 6 C 1.38121 * 120.05762 * 180.02562 * 5 4 3 7 7 C 1.38781 * 119.94487 * 359.97438 * 6 5 4 8 8 O 1.35862 * 120.06310 * 180.02562 * 7 6 5 9 9 C 1.35632 * 117.99779 * 183.58234 * 8 7 6 10 10 C 1.39362 * 119.81560 * 257.31553 * 9 8 7 11 11 C 1.36408 * 120.17625 * 180.27754 * 10 9 8 12 12 C 1.40847 * 119.82162 * 0.02562 * 11 10 9 13 13 C 1.41186 * 120.17979 * 179.97438 * 12 11 10 14 14 H 1.08000 * 119.99965 * 205.09206 * 13 12 11 15 15 C 1.39886 * 120.00011 * 25.08708 * 13 12 11 16 16 N 1.30883 * 119.99696 * 18.12100 * 15 13 12 17 17 Si 1.86796 * 119.99997 * 198.11388 * 15 13 12 18 18 H 1.48504 * 109.46912 * 84.99064 * 17 15 13 19 19 H 1.48506 * 109.47113 * 204.99179 * 17 15 13 20 20 H 1.48504 * 109.47253 * 324.99228 * 17 15 13 21 21 C 1.40850 * 119.64626 * 359.97438 * 12 11 10 22 22 C 1.36421 * 119.81567 * 0.02562 * 21 12 11 23 23 C 1.38787 * 119.87771 * 0.27812 * 7 6 5 24 24 C 1.38125 * 119.93648 * 359.44550 * 23 7 6 25 25 H 1.08996 * 109.47732 * 83.11241 * 3 2 1 26 26 H 1.09005 * 109.47125 * 323.10435 * 3 2 1 27 27 H 1.07997 * 119.96713 * 359.97438 * 5 4 3 28 28 H 1.08007 * 120.02528 * 179.97438 * 6 5 4 29 29 H 1.08000 * 119.90994 * 0.28496 * 10 9 8 30 30 H 1.08005 * 120.08724 * 179.97438 * 11 10 9 31 31 H 0.97002 * 119.99763 * 180.02562 * 16 15 13 32 32 H 1.08001 * 120.09506 * 179.97438 * 21 12 11 33 33 H 1.07995 * 119.91185 * 179.97438 * 22 21 12 34 34 H 1.08002 * 120.02813 * 179.72650 * 23 7 6 35 35 H 1.07999 * 119.97071 * 180.25515 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1097 1.3077 0.5577 5 6 3.3396 1.4360 1.9153 6 6 3.7989 2.6330 2.4291 7 6 4.0301 3.7074 1.5816 8 8 4.4824 4.8857 2.0844 9 6 4.6236 5.9300 1.2304 10 6 5.8913 6.2841 0.7725 11 6 6.0424 7.3366 -0.0820 12 6 4.9129 8.0664 -0.5010 13 6 5.0607 9.1574 -1.3849 14 1 4.3232 9.9463 -1.3969 15 6 6.1622 9.2165 -2.2451 16 7 6.8545 8.1347 -2.4970 17 14 6.6450 10.8393 -3.0341 18 1 7.5116 11.6045 -2.1020 19 1 7.3848 10.5761 -4.2946 20 1 5.4224 11.6275 -3.3331 21 6 3.6352 7.7019 -0.0336 22 6 3.5010 6.6468 0.8207 23 6 3.7935 3.5775 0.2202 24 6 3.3397 2.3765 -0.2890 25 1 2.9715 -0.1224 -1.0202 26 1 2.9717 -0.8211 0.6170 27 1 3.1591 0.5997 2.5744 28 1 3.9780 2.7327 3.4895 29 1 6.7564 5.7237 1.0949 30 1 7.0256 7.6101 -0.4357 31 1 7.6186 8.1758 -3.0932 32 1 2.7643 8.2567 -0.3498 33 1 2.5221 6.3663 1.1804 34 1 3.9684 4.4134 -0.4409 35 1 3.1593 2.2735 -1.3489 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000001699470.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:13 Heat of formation + Delta-G solvation = 31.300939 kcal Electronic energy + Delta-G solvation = -19635.397622 eV Core-core repulsion = 16563.300938 eV Total energy + Delta-G solvation = -3072.096684 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.100 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.09351 -38.34028 -36.91210 -36.24301 -33.68172 -32.23176 -30.78809 -29.84390 -29.35676 -27.20297 -25.15094 -22.65303 -21.95565 -21.23687 -20.47476 -17.98265 -17.65112 -17.53240 -16.21739 -15.58263 -15.51308 -14.76532 -14.58012 -14.14296 -14.09642 -13.60417 -13.27984 -13.15346 -12.88944 -12.78605 -12.58726 -12.30152 -12.07289 -11.71523 -11.47544 -11.32674 -11.28698 -11.19720 -11.01005 -10.70445 -10.38902 -10.02187 -9.55843 -9.31776 -8.78071 -7.85743 -7.80236 -7.44415 -7.00044 -4.57666 1.54276 1.58580 2.38669 2.71905 2.73579 2.86294 2.94833 2.98465 2.99595 3.76233 3.80737 4.03472 4.23830 4.50723 4.80492 4.90506 5.13804 5.28955 5.35110 5.47731 5.61940 5.76277 5.94584 6.04556 6.11859 6.22879 6.46613 6.67268 6.70570 6.74652 6.81852 6.87667 7.04808 7.09180 7.35708 7.40648 7.50479 7.73912 7.80468 7.99308 8.28870 8.47831 8.63241 8.79538 9.93012 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.026884 B = 0.003543 C = 0.003381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.280384 B = 7900.105598 C = 8280.035738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C 0.212 3.788 3 C 0.026 3.974 4 C -0.154 4.154 5 C -0.072 4.072 6 C -0.165 4.165 7 C 0.142 3.858 8 O -0.246 6.246 9 C -0.082 4.082 10 C -0.089 4.089 11 C -0.160 4.160 12 C 0.115 3.885 13 C -0.449 4.449 14 H 0.083 0.917 15 C 0.074 3.926 16 N -0.780 5.780 17 Si 0.913 3.087 18 H -0.265 1.265 19 H -0.276 1.276 20 H -0.261 1.261 21 C -0.219 4.219 22 C -0.087 4.087 23 C -0.190 4.190 24 C -0.068 4.068 25 H 0.115 0.885 26 H 0.114 0.886 27 H 0.125 0.875 28 H 0.127 0.873 29 H 0.096 0.904 30 H 0.123 0.877 31 H 0.285 0.715 32 H 0.099 0.901 33 H 0.094 0.906 34 H 0.139 0.861 35 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.286 -10.105 2.528 10.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.121 5.121 2 C -0.105 4.105 3 C -0.014 4.014 4 C -0.155 4.155 5 C -0.090 4.090 6 C -0.184 4.184 7 C 0.097 3.903 8 O -0.157 6.157 9 C -0.125 4.125 10 C -0.108 4.108 11 C -0.180 4.180 12 C 0.112 3.888 13 C -0.477 4.477 14 H 0.101 0.899 15 C -0.146 4.146 16 N -0.404 5.404 17 Si 0.737 3.263 18 H -0.189 1.189 19 H -0.201 1.201 20 H -0.185 1.185 21 C -0.239 4.239 22 C -0.105 4.105 23 C -0.208 4.208 24 C -0.086 4.086 25 H 0.132 0.868 26 H 0.132 0.868 27 H 0.143 0.857 28 H 0.145 0.855 29 H 0.114 0.886 30 H 0.141 0.859 31 H 0.096 0.904 32 H 0.117 0.883 33 H 0.112 0.888 34 H 0.157 0.843 35 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -1.742 -10.152 2.559 10.614 hybrid contribution 0.685 0.749 -0.631 1.195 sum -1.057 -9.403 1.928 9.657 Atomic orbital electron populations 1.81208 1.13127 1.08780 1.08941 1.29265 0.95250 0.92947 0.93082 1.18056 0.81363 0.97400 1.04535 1.19156 1.07522 0.94795 0.94056 1.20700 0.97506 0.96734 0.94088 1.20361 1.06467 0.91898 0.99677 1.19840 0.91436 0.87038 0.92003 1.84507 1.78693 1.16265 1.36203 1.18141 0.93805 0.92849 1.07683 1.20513 0.94650 0.98678 0.96920 1.20930 0.99457 0.98352 0.99223 1.17724 0.90521 0.91004 0.89512 1.19681 1.06345 1.05650 1.16041 0.89890 1.26005 0.95006 0.97906 0.95655 1.69833 1.14926 1.28500 1.27161 0.86237 0.79733 0.81715 0.78644 1.18939 1.20118 1.18458 1.20662 0.96806 1.01123 1.05286 1.20523 0.95974 0.96798 0.97226 1.21517 1.04783 0.99423 0.95111 1.20842 0.96570 0.91858 0.99316 0.86752 0.86807 0.85721 0.85481 0.88554 0.85891 0.90372 0.88261 0.88759 0.84337 0.85946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -6.42 18.54 42.15 0.78 -5.64 16 2 C 0.21 2.38 15.41 -20.76 -0.32 2.06 16 3 C 0.03 0.20 5.83 -30.67 -0.18 0.02 16 4 C -0.15 -1.75 5.09 -104.59 -0.53 -2.28 16 5 C -0.07 -0.85 9.69 -39.61 -0.38 -1.23 16 6 C -0.17 -2.40 9.99 -39.42 -0.39 -2.79 16 7 C 0.14 2.52 6.62 -39.18 -0.26 2.26 16 8 O -0.25 -5.05 9.96 -2.67 -0.03 -5.08 16 9 C -0.08 -1.82 4.34 -38.75 -0.17 -1.99 16 10 C -0.09 -2.02 9.92 -39.82 -0.40 -2.41 16 11 C -0.16 -3.91 8.64 -39.26 -0.34 -4.25 16 12 C 0.12 2.88 5.57 -106.80 -0.59 2.28 16 13 C -0.45 -11.08 9.03 -37.85 -0.34 -11.43 16 14 H 0.08 1.96 7.91 -52.49 -0.42 1.55 16 15 C 0.07 1.73 5.12 -17.34 -0.09 1.64 16 16 N -0.78 -18.69 11.01 55.54 0.61 -18.08 16 17 Si 0.91 17.36 29.60 -169.99 -5.03 12.33 16 18 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 19 H -0.28 -5.14 7.11 56.52 0.40 -4.74 16 20 H -0.26 -4.92 7.11 56.52 0.40 -4.52 16 21 C -0.22 -5.10 9.74 -39.25 -0.38 -5.48 16 22 C -0.09 -1.91 9.06 -39.82 -0.36 -2.27 16 23 C -0.19 -3.28 8.99 -39.42 -0.35 -3.63 16 24 C -0.07 -0.93 9.69 -39.61 -0.38 -1.31 16 25 H 0.11 0.61 8.08 -51.93 -0.42 0.19 16 26 H 0.11 0.53 8.08 -51.93 -0.42 0.11 16 27 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 28 H 0.13 1.66 8.06 -52.48 -0.42 1.23 16 29 H 0.10 2.02 8.06 -52.49 -0.42 1.60 16 30 H 0.12 3.07 6.21 -52.48 -0.33 2.74 16 31 H 0.29 6.18 8.30 -40.82 -0.34 5.85 16 32 H 0.10 2.16 8.06 -52.49 -0.42 1.74 16 33 H 0.09 1.92 8.06 -52.49 -0.42 1.50 16 34 H 0.14 2.72 6.45 -52.49 -0.34 2.38 16 35 H 0.12 1.43 8.06 -52.49 -0.42 1.00 16 LS Contribution 316.54 15.07 4.77 4.77 Total: -1.00 -27.85 316.54 -7.96 -35.81 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -3.59 Total: 6.69 kcal Atomic # 6 Polarization: -25.34 SS G_CDS: -5.48 Total: -30.81 kcal Atomic # 7 Polarization: -25.11 SS G_CDS: 1.39 Total: -23.72 kcal Atomic # 8 Polarization: -5.05 SS G_CDS: -0.03 Total: -5.08 kcal Atomic # 14 Polarization: 17.36 SS G_CDS: -5.03 Total: 12.33 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -27.85 -7.96 -35.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000001699470.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.116 kcal (2) G-P(sol) polarization free energy of solvation -27.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds