Wall clock time and date at job start Wed Apr 15 2020 11:44:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 C 1.50700 * 109.46822 * 203.11266 * 3 2 1 5 5 C 1.38286 * 119.94305 * 89.99931 * 4 3 2 6 6 C 1.38121 * 120.05762 * 180.02562 * 5 4 3 7 7 C 1.38781 * 119.94487 * 359.97438 * 6 5 4 8 8 O 1.35862 * 120.06310 * 180.02562 * 7 6 5 9 9 C 1.35632 * 117.99779 * 183.58234 * 8 7 6 10 10 C 1.39362 * 119.81560 * 257.31553 * 9 8 7 11 11 C 1.36408 * 120.17625 * 180.27754 * 10 9 8 12 12 C 1.40847 * 119.82162 * 0.02562 * 11 10 9 13 13 C 1.41186 * 120.17979 * 179.97438 * 12 11 10 14 14 H 1.08000 * 119.99965 * 205.09206 * 13 12 11 15 15 C 1.39886 * 120.00011 * 25.08708 * 13 12 11 16 16 N 1.30883 * 119.99696 * 18.12100 * 15 13 12 17 17 Si 1.86796 * 119.99997 * 198.11388 * 15 13 12 18 18 H 1.48504 * 109.46912 * 84.99064 * 17 15 13 19 19 H 1.48506 * 109.47113 * 204.99179 * 17 15 13 20 20 H 1.48504 * 109.47253 * 324.99228 * 17 15 13 21 21 C 1.40850 * 119.64626 * 359.97438 * 12 11 10 22 22 C 1.36421 * 119.81567 * 0.02562 * 21 12 11 23 23 C 1.38787 * 119.87771 * 0.27812 * 7 6 5 24 24 C 1.38125 * 119.93648 * 359.44550 * 23 7 6 25 25 H 1.08996 * 109.47732 * 83.11241 * 3 2 1 26 26 H 1.09005 * 109.47125 * 323.10435 * 3 2 1 27 27 H 1.07997 * 119.96713 * 359.97438 * 5 4 3 28 28 H 1.08007 * 120.02528 * 179.97438 * 6 5 4 29 29 H 1.08000 * 119.90994 * 0.28496 * 10 9 8 30 30 H 1.08005 * 120.08724 * 179.97438 * 11 10 9 31 31 H 0.97002 * 119.99763 * 180.02562 * 16 15 13 32 32 H 1.08001 * 120.09506 * 179.97438 * 21 12 11 33 33 H 1.07995 * 119.91185 * 179.97438 * 22 21 12 34 34 H 1.08002 * 120.02813 * 179.72650 * 23 7 6 35 35 H 1.07999 * 119.97071 * 180.25515 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1097 1.3077 0.5577 5 6 3.3396 1.4360 1.9153 6 6 3.7989 2.6330 2.4291 7 6 4.0301 3.7074 1.5816 8 8 4.4824 4.8857 2.0844 9 6 4.6236 5.9300 1.2304 10 6 5.8913 6.2841 0.7725 11 6 6.0424 7.3366 -0.0820 12 6 4.9129 8.0664 -0.5010 13 6 5.0607 9.1574 -1.3849 14 1 4.3232 9.9463 -1.3969 15 6 6.1622 9.2165 -2.2451 16 7 6.8545 8.1347 -2.4970 17 14 6.6450 10.8393 -3.0341 18 1 7.5116 11.6045 -2.1020 19 1 7.3848 10.5761 -4.2946 20 1 5.4224 11.6275 -3.3331 21 6 3.6352 7.7019 -0.0336 22 6 3.5010 6.6468 0.8207 23 6 3.7935 3.5775 0.2202 24 6 3.3397 2.3765 -0.2890 25 1 2.9715 -0.1224 -1.0202 26 1 2.9717 -0.8211 0.6170 27 1 3.1591 0.5997 2.5744 28 1 3.9780 2.7327 3.4895 29 1 6.7564 5.7237 1.0949 30 1 7.0256 7.6101 -0.4357 31 1 7.6186 8.1758 -3.0932 32 1 2.7643 8.2567 -0.3498 33 1 2.5221 6.3663 1.1804 34 1 3.9684 4.4134 -0.4409 35 1 3.1593 2.2735 -1.3489 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000001699470.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:09 Heat of formation + Delta-G solvation = 18.533188 kcal Electronic energy + Delta-G solvation = -19635.951273 eV Core-core repulsion = 16563.300938 eV Total energy + Delta-G solvation = -3072.650336 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.100 amu Computer time = 1.82 seconds Orbital eigenvalues (eV) -41.49778 -39.67651 -38.41401 -37.34568 -35.42573 -33.26452 -31.94058 -31.64547 -31.08982 -28.31442 -26.82619 -23.92302 -23.34784 -22.96105 -21.96391 -19.41077 -19.31701 -18.57340 -17.52173 -17.22059 -16.54344 -16.37565 -15.88203 -15.63473 -15.14471 -14.86176 -14.50077 -14.40842 -14.28378 -14.11863 -14.02744 -13.77320 -13.66307 -13.14130 -12.88633 -12.74519 -12.57164 -12.40704 -12.24636 -12.13205 -11.79125 -11.66561 -11.29452 -11.06485 -9.89617 -9.64646 -9.36755 -8.99348 -8.74120 -6.43106 0.40902 0.46721 0.66003 1.00566 1.38899 1.46820 1.52090 1.86345 1.89872 2.17315 2.42684 2.76234 2.86356 3.40577 3.60597 3.96304 3.98442 4.09948 4.27095 4.30960 4.43002 4.49203 4.65496 4.85943 4.87975 4.92840 5.03109 5.12478 5.15964 5.23519 5.35510 5.53043 5.57318 5.58299 5.63542 5.90931 5.95809 6.01738 6.17175 6.48548 6.68744 6.73957 6.80148 7.07689 8.21629 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.026884 B = 0.003543 C = 0.003381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.280384 B = 7900.105598 C = 8280.035738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C 0.238 3.762 3 C 0.032 3.968 4 C -0.135 4.135 5 C -0.061 4.061 6 C -0.167 4.167 7 C 0.104 3.896 8 O -0.264 6.264 9 C -0.066 4.066 10 C -0.097 4.097 11 C -0.175 4.175 12 C 0.088 3.912 13 C -0.484 4.484 14 H 0.083 0.917 15 C 0.037 3.963 16 N -0.811 5.811 17 Si 0.986 3.014 18 H -0.261 1.261 19 H -0.266 1.266 20 H -0.257 1.257 21 C -0.229 4.229 22 C -0.090 4.090 23 C -0.214 4.214 24 C -0.073 4.073 25 H 0.147 0.853 26 H 0.160 0.840 27 H 0.170 0.830 28 H 0.140 0.860 29 H 0.108 0.892 30 H 0.112 0.888 31 H 0.293 0.707 32 H 0.108 0.892 33 H 0.109 0.891 34 H 0.103 0.897 35 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.317 -12.534 2.686 12.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.186 5.186 2 C -0.078 4.078 3 C -0.007 4.007 4 C -0.136 4.136 5 C -0.079 4.079 6 C -0.186 4.186 7 C 0.060 3.940 8 O -0.176 6.176 9 C -0.108 4.108 10 C -0.116 4.116 11 C -0.194 4.194 12 C 0.085 3.915 13 C -0.512 4.512 14 H 0.101 0.899 15 C -0.180 4.180 16 N -0.436 5.436 17 Si 0.806 3.194 18 H -0.186 1.186 19 H -0.191 1.191 20 H -0.181 1.181 21 C -0.249 4.249 22 C -0.108 4.108 23 C -0.233 4.233 24 C -0.091 4.091 25 H 0.164 0.836 26 H 0.178 0.822 27 H 0.187 0.813 28 H 0.158 0.842 29 H 0.126 0.874 30 H 0.129 0.871 31 H 0.104 0.896 32 H 0.126 0.874 33 H 0.127 0.873 34 H 0.121 0.879 35 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -1.783 -12.605 2.724 13.019 hybrid contribution 0.640 1.229 -0.590 1.506 sum -1.143 -11.376 2.135 11.631 Atomic orbital electron populations 1.81256 1.15315 1.10754 1.11274 1.29833 0.95725 0.91104 0.91121 1.18412 0.78708 0.96271 1.07297 1.19536 1.04837 0.95516 0.93735 1.21243 0.95101 0.96657 0.94892 1.20691 1.05992 0.91823 1.00080 1.20081 0.94202 0.86721 0.92959 1.84368 1.80053 1.17076 1.36127 1.18146 0.93396 0.93247 1.06050 1.20669 0.95655 0.98434 0.96796 1.20876 0.98955 0.99333 1.00282 1.18026 0.91236 0.91820 0.90406 1.19916 1.07864 1.06110 1.17291 0.89867 1.26827 0.94316 1.01239 0.95656 1.69872 1.15466 1.30381 1.27850 0.85151 0.79357 0.77051 0.77854 1.18552 1.19066 1.18118 1.20822 0.96685 1.01631 1.05743 1.20672 0.96770 0.96385 0.97012 1.21372 1.07182 1.00099 0.94638 1.21125 0.95897 0.91215 1.00840 0.83553 0.82209 0.81268 0.84212 0.87356 0.87054 0.89566 0.87433 0.87337 0.87923 0.84110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -13.62 18.54 20.00 0.37 -13.25 16 2 C 0.24 4.42 15.41 89.44 1.38 5.80 16 3 C 0.03 0.30 5.83 28.04 0.16 0.46 16 4 C -0.13 -2.48 5.09 -19.84 -0.10 -2.58 16 5 C -0.06 -1.16 9.69 22.25 0.22 -0.94 16 6 C -0.17 -4.47 9.99 22.37 0.22 -4.25 16 7 C 0.10 3.69 6.62 22.53 0.15 3.83 16 8 O -0.26 -11.07 9.96 -32.48 -0.32 -11.40 16 9 C -0.07 -3.01 4.34 22.81 0.10 -2.91 16 10 C -0.10 -4.60 9.92 22.11 0.22 -4.38 16 11 C -0.18 -9.00 8.64 22.48 0.19 -8.80 16 12 C 0.09 4.60 5.57 -21.28 -0.12 4.48 16 13 C -0.48 -24.87 9.03 23.39 0.21 -24.66 16 14 H 0.08 4.10 7.91 -2.91 -0.02 4.08 16 15 C 0.04 1.75 5.12 85.23 0.44 2.19 16 16 N -0.81 -40.09 11.01 21.82 0.24 -39.85 16 17 Si 0.99 35.94 29.60 68.60 2.03 37.97 16 18 H -0.26 -9.29 7.11 99.48 0.71 -8.59 16 19 H -0.27 -9.19 7.11 99.48 0.71 -8.48 16 20 H -0.26 -9.16 7.11 99.48 0.71 -8.45 16 21 C -0.23 -11.14 9.74 22.48 0.22 -10.92 16 22 C -0.09 -4.10 9.06 22.11 0.20 -3.90 16 23 C -0.21 -7.46 8.99 22.37 0.20 -7.26 16 24 C -0.07 -1.85 9.69 22.25 0.22 -1.63 16 25 H 0.15 0.63 8.08 -2.39 -0.02 0.61 16 26 H 0.16 0.23 8.08 -2.38 -0.02 0.21 16 27 H 0.17 1.76 8.06 -2.91 -0.02 1.74 16 28 H 0.14 3.31 8.06 -2.91 -0.02 3.28 16 29 H 0.11 4.73 8.06 -2.91 -0.02 4.71 16 30 H 0.11 5.88 6.21 -2.91 -0.02 5.86 16 31 H 0.29 13.00 8.30 -92.71 -0.77 12.23 16 32 H 0.11 4.88 8.06 -2.91 -0.02 4.86 16 33 H 0.11 4.54 8.06 -2.91 -0.02 4.51 16 34 H 0.10 4.28 6.45 -2.91 -0.02 4.26 16 35 H 0.14 2.96 8.06 -2.91 -0.02 2.94 16 Total: -1.00 -65.57 316.54 7.34 -58.23 By element: Atomic # 1 Polarization: 22.66 SS G_CDS: 1.11 Total: 23.77 kcal Atomic # 6 Polarization: -59.38 SS G_CDS: 3.91 Total: -55.47 kcal Atomic # 7 Polarization: -53.71 SS G_CDS: 0.61 Total: -53.10 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: -0.32 Total: -11.40 kcal Atomic # 14 Polarization: 35.94 SS G_CDS: 2.03 Total: 37.97 kcal Total: -65.57 7.34 -58.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000001699470.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.761 kcal (2) G-P(sol) polarization free energy of solvation -65.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.228 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.82 seconds