Wall clock time and date at job start Wed Apr 15 2020 11:44:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86799 * 120.00024 * 2 1 4 4 H 1.48505 * 109.47071 * 270.00124 * 3 2 1 5 5 H 1.48498 * 109.47142 * 29.99721 * 3 2 1 6 6 H 1.48494 * 109.47022 * 149.99889 * 3 2 1 7 7 C 1.38800 * 119.99653 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99554 * 180.02562 * 7 2 1 9 9 S 1.76197 * 120.00465 * 359.97438 * 7 2 1 10 10 C 1.81000 * 100.00137 * 180.02562 * 9 7 2 11 11 C 1.50698 * 109.47150 * 180.02562 * 10 9 7 12 12 O 1.21282 * 120.00247 * 359.97438 * 11 10 9 13 13 N 1.34773 * 119.99783 * 180.02562 * 11 10 9 14 14 C 1.46509 * 119.99780 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.47027 * 179.97438 * 14 13 11 16 16 C 1.52995 * 109.47085 * 179.97438 * 15 14 13 17 17 C 1.50707 * 109.47301 * 179.97438 * 16 15 14 18 18 C 1.38238 * 119.99792 * 90.00016 * 17 16 15 19 19 C 1.38235 * 119.99712 * 179.97438 * 18 17 16 20 20 C 1.38234 * 120.00220 * 359.97124 * 19 18 17 21 21 C 1.38233 * 120.00037 * 0.28719 * 20 19 18 22 22 C 1.38234 * 120.00179 * 269.97953 * 17 16 15 23 23 H 0.96995 * 120.00510 * 0.02562 * 1 2 3 24 24 H 1.09003 * 109.47172 * 60.00437 * 10 9 7 25 25 H 1.09004 * 109.47218 * 300.00243 * 10 9 7 26 26 H 0.96998 * 120.00418 * 359.97438 * 13 11 10 27 27 H 1.08992 * 109.47597 * 59.99530 * 14 13 11 28 28 H 1.08999 * 109.46361 * 299.99232 * 14 13 11 29 29 H 1.08995 * 109.47671 * 59.99445 * 15 14 13 30 30 H 1.09004 * 109.46984 * 299.99461 * 15 14 13 31 31 H 1.09005 * 109.47610 * 59.99944 * 16 15 14 32 32 H 1.09000 * 109.47256 * 299.99285 * 16 15 14 33 33 H 1.08005 * 120.00068 * 359.97438 * 18 17 16 34 34 H 1.07999 * 119.99770 * 179.97438 * 19 18 17 35 35 H 1.08002 * 119.99744 * 180.02562 * 20 19 18 36 36 H 1.07998 * 120.00395 * 179.72811 * 21 20 19 37 37 H 1.07999 * 119.99968 * 359.97438 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 16 1.1293 -2.7280 -0.0005 10 6 2.5158 -3.8915 -0.0005 11 6 1.9874 -5.3027 -0.0012 12 8 0.7911 -5.5024 -0.0011 13 7 2.8441 -6.3431 -0.0008 14 6 2.3304 -7.7151 -0.0019 15 6 3.5024 -8.6986 -0.0018 16 6 2.9659 -10.1314 -0.0024 17 6 4.1204 -11.1001 -0.0029 18 6 4.6499 -11.5449 1.1940 19 6 5.7085 -12.4339 1.1935 20 6 6.2371 -12.8785 -0.0038 21 6 5.7111 -12.4296 -1.2007 22 6 4.6495 -11.5442 -1.2003 23 1 -0.4851 0.8400 -0.0004 24 1 3.1244 -3.7314 0.8895 25 1 3.1245 -3.7314 -0.8905 26 1 3.8009 -6.1835 -0.0004 27 1 1.7226 -7.8748 -0.8925 28 1 1.7210 -7.8755 0.8874 29 1 4.1105 -8.5391 0.8885 30 1 4.1115 -8.5380 -0.8914 31 1 2.3576 -10.2913 -0.8927 32 1 2.3571 -10.2917 0.8874 33 1 4.2365 -11.1979 2.1296 34 1 6.1224 -12.7811 2.1287 35 1 7.0639 -13.5734 -0.0041 36 1 6.1270 -12.7736 -2.1362 37 1 4.2353 -11.1973 -2.1354 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041751541.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:17 Heat of formation + Delta-G solvation = -33.412502 kcal Electronic energy + Delta-G solvation = -17602.862502 eV Core-core repulsion = 14663.403584 eV Total energy + Delta-G solvation = -2939.458918 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.103 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.67638 -39.08042 -35.86634 -33.56728 -32.41942 -31.20035 -30.72903 -28.90417 -25.82277 -25.35880 -22.88843 -22.33703 -21.22468 -20.19730 -17.81207 -17.13029 -16.21734 -16.05522 -15.99015 -15.25905 -15.21846 -14.79577 -14.33443 -13.97003 -13.70684 -13.70569 -13.32279 -13.02376 -12.68936 -12.59136 -12.22705 -11.83660 -11.82742 -11.39184 -11.14163 -11.05742 -11.01506 -10.96564 -10.75067 -9.80725 -9.40671 -9.23873 -9.06180 -8.99374 -8.85751 -8.22367 -6.48936 -6.20736 -3.91209 1.03197 1.08333 3.05498 3.12615 3.23007 3.28596 3.32781 3.46731 3.76291 4.21362 4.38260 4.49632 4.68641 4.79159 4.79822 4.96077 5.00461 5.14272 5.16789 5.19534 5.24329 5.40890 5.42156 5.59033 5.70822 5.72224 5.77115 5.87132 5.94130 6.02691 6.15170 6.15596 6.20087 6.33466 6.64374 6.69742 7.60475 7.73720 8.36173 8.64040 9.24480 10.86709 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.045961 B = 0.002284 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.071721 B =12256.872866 C =12545.550062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.535 4.535 8 H 0.072 0.928 9 S -0.061 6.061 10 C -0.153 4.153 11 C 0.531 3.469 12 O -0.518 6.518 13 N -0.740 5.740 14 C 0.120 3.880 15 C -0.124 4.124 16 C -0.079 4.079 17 C -0.079 4.079 18 C -0.117 4.117 19 C -0.119 4.119 20 C -0.128 4.128 21 C -0.119 4.119 22 C -0.117 4.117 23 H 0.268 0.732 24 H 0.089 0.911 25 H 0.089 0.911 26 H 0.398 0.602 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.122 0.878 34 H 0.120 0.880 35 H 0.119 0.881 36 H 0.121 0.879 37 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.745 -24.382 -0.008 27.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.304 4.304 11 C 0.317 3.683 12 O -0.393 6.393 13 N -0.395 5.395 14 C -0.004 4.004 15 C -0.162 4.162 16 C -0.117 4.117 17 C -0.079 4.079 18 C -0.135 4.135 19 C -0.137 4.137 20 C -0.146 4.146 21 C -0.137 4.137 22 C -0.135 4.135 23 H 0.078 0.922 24 H 0.108 0.892 25 H 0.108 0.892 26 H 0.231 0.769 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.095 0.905 32 H 0.096 0.904 33 H 0.140 0.860 34 H 0.139 0.861 35 H 0.137 0.863 36 H 0.139 0.861 37 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 10.557 -24.608 -0.003 26.777 hybrid contribution 2.530 1.291 -0.008 2.840 sum 13.087 -23.317 -0.011 26.739 Atomic orbital electron populations 1.70017 1.05945 1.27444 1.46886 1.25000 0.95040 0.99042 0.94567 0.86160 0.79398 0.81553 0.78339 1.20273 1.20759 1.19706 1.22868 0.94909 0.91661 1.58900 0.90933 1.85395 1.05006 0.96331 1.96714 1.23533 1.06528 0.95440 1.04909 1.20311 0.86538 0.86317 0.75164 1.90700 1.15388 1.85645 1.47546 1.46010 1.09931 1.05591 1.77929 1.21284 0.95998 0.80674 1.02424 1.21763 0.97965 0.93329 1.03114 1.20538 0.95218 0.92300 1.03672 1.19914 0.97310 0.97459 0.93201 1.21105 0.96867 0.97828 0.97736 1.21163 0.96719 0.97742 0.98102 1.21155 1.00255 1.00455 0.92692 1.21163 0.96698 0.97755 0.98106 1.21104 0.96834 0.97867 0.97731 0.92191 0.89233 0.89242 0.76854 0.91617 0.91606 0.91117 0.91113 0.90453 0.90448 0.85996 0.86148 0.86271 0.86147 0.85998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.30 13.22 55.49 0.73 -25.57 16 2 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.49 29.55 -169.99 -5.02 16.47 16 4 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 6 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 7 C -0.54 -15.34 9.50 30.94 0.29 -15.05 16 8 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 9 S -0.06 -1.67 20.57 -107.50 -2.21 -3.89 16 10 C -0.15 -3.13 6.16 36.00 0.22 -2.90 16 11 C 0.53 10.05 7.85 -10.99 -0.09 9.97 16 12 O -0.52 -11.97 15.86 5.56 0.09 -11.88 16 13 N -0.74 -9.96 5.56 -60.29 -0.33 -10.30 16 14 C 0.12 1.37 5.67 -4.04 -0.02 1.35 16 15 C -0.12 -1.01 5.31 -26.74 -0.14 -1.15 16 16 C -0.08 -0.59 5.34 -27.88 -0.15 -0.74 16 17 C -0.08 -0.64 5.13 -104.62 -0.54 -1.17 16 18 C -0.12 -0.92 9.70 -39.58 -0.38 -1.31 16 19 C -0.12 -0.88 10.05 -39.58 -0.40 -1.28 16 20 C -0.13 -0.92 10.05 -39.58 -0.40 -1.31 16 21 C -0.12 -0.88 10.05 -39.58 -0.40 -1.28 16 22 C -0.12 -0.92 9.70 -39.58 -0.38 -1.31 16 23 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 24 H 0.09 1.68 8.14 -51.91 -0.42 1.26 16 25 H 0.09 1.68 8.14 -51.91 -0.42 1.26 16 26 H 0.40 4.17 8.47 -40.82 -0.35 3.83 16 27 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.08 0.55 8.09 -51.93 -0.42 0.13 16 32 H 0.08 0.55 8.09 -51.93 -0.42 0.13 16 33 H 0.12 0.81 8.06 -52.48 -0.42 0.38 16 34 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 35 H 0.12 0.62 8.06 -52.49 -0.42 0.20 16 36 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 37 H 0.12 0.81 8.06 -52.49 -0.42 0.38 16 LS Contribution 335.99 15.07 5.06 5.06 Total: -1.00 -34.70 335.99 -9.54 -44.24 By element: Atomic # 1 Polarization: 5.43 SS G_CDS: -5.38 Total: 0.05 kcal Atomic # 6 Polarization: -11.71 SS G_CDS: -2.48 Total: -14.19 kcal Atomic # 7 Polarization: -36.26 SS G_CDS: 0.40 Total: -35.87 kcal Atomic # 8 Polarization: -11.97 SS G_CDS: 0.09 Total: -11.88 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -34.70 -9.54 -44.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041751541.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.830 kcal (2) G-P(sol) polarization free energy of solvation -34.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds