Wall clock time and date at job start Wed Apr 15 2020 11:43:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30843 * 1 3 3 Si 1.86795 * 119.99606 * 2 1 4 4 H 1.48506 * 109.47170 * 239.99956 * 3 2 1 5 5 H 1.48504 * 109.47343 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47196 * 120.00142 * 3 2 1 7 7 C 1.39924 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99754 * 192.40819 * 7 2 1 9 9 C 1.41415 * 119.99825 * 12.40122 * 7 2 1 10 10 C 1.40790 * 120.20608 * 206.11948 * 9 7 2 11 11 C 1.37655 * 119.89721 * 180.02562 * 10 9 7 12 12 C 1.38517 * 120.32772 * 359.72401 * 11 10 9 13 13 C 1.39317 * 120.41773 * 0.55154 * 12 11 10 14 14 N 1.39699 * 119.95138 * 179.72362 * 13 12 11 15 15 C 1.39851 * 119.99987 * 7.65514 * 14 13 12 16 16 C 1.38504 * 120.08786 * 254.19327 * 15 14 13 17 17 C 1.38648 * 120.60254 * 179.97438 * 16 15 14 18 18 C 1.37758 * 120.34246 * 0.10169 * 17 16 15 19 19 C 1.39560 * 119.74124 * 359.92814 * 18 17 16 20 20 C 1.46783 * 134.28132 * 180.02562 * 19 18 17 21 21 C 1.34014 * 106.18749 * 179.97438 * 20 19 18 22 22 O 1.34416 * 110.11849 * 0.02562 * 21 20 19 23 23 C 1.34887 * 110.87324 * 359.97438 * 22 21 20 24 24 C 1.38346 * 120.09375 * 359.44763 * 13 12 11 25 25 H 0.96993 * 120.00068 * 0.02562 * 1 2 3 26 26 H 1.08005 * 120.04925 * 0.02562 * 10 9 7 27 27 H 1.07996 * 119.83275 * 179.97438 * 11 10 9 28 28 H 1.07991 * 119.78729 * 180.30087 * 12 11 10 29 29 H 0.96993 * 120.00077 * 187.64989 * 14 13 12 30 30 H 1.07999 * 119.69756 * 0.02562 * 16 15 14 31 31 H 1.08003 * 119.83221 * 180.02562 * 17 16 15 32 32 H 1.07996 * 120.13063 * 180.21397 * 18 17 16 33 33 H 1.08002 * 126.90432 * 0.04190 * 20 19 18 34 34 H 1.07998 * 124.93767 * 180.02562 * 21 20 19 35 35 H 1.07997 * 120.16178 * 180.24930 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.0961 1.6965 -1.2125 5 1 1.2772 2.7465 -0.0006 6 1 3.0961 1.6965 1.2125 7 6 2.0081 -1.2117 -0.0005 8 1 3.0691 -1.2226 0.2004 9 6 1.3258 -2.4220 -0.2641 10 6 1.8195 -3.6387 0.2441 11 6 1.1506 -4.8131 -0.0168 12 6 -0.0101 -4.8039 -0.7727 13 6 -0.5075 -3.6084 -1.2869 14 7 -1.6758 -3.6111 -2.0528 15 6 -2.4322 -4.7816 -2.1703 16 6 -2.4103 -5.5070 -3.3500 17 6 -3.1556 -6.6691 -3.4779 18 6 -3.9312 -7.1172 -2.4312 19 6 -3.9643 -6.3970 -1.2362 20 6 -4.6553 -6.5720 0.0469 21 6 -4.2825 -5.5396 0.8158 22 8 -3.4337 -4.7443 0.1422 23 6 -3.2116 -5.2210 -1.0999 24 6 0.1508 -2.4179 -1.0354 25 1 -0.4850 0.8400 -0.0004 26 1 2.7218 -3.6504 0.8377 27 1 1.5305 -5.7458 0.3732 28 1 -0.5306 -5.7297 -0.9679 29 1 -1.9624 -2.8013 -2.5031 30 1 -1.8066 -5.1647 -4.1774 31 1 -3.1290 -7.2253 -4.4033 32 1 -4.5077 -8.0247 -2.5334 33 1 -5.3281 -7.3724 0.3173 34 1 -4.6157 -5.3712 1.8292 35 1 -0.2360 -1.4901 -1.4301 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001249916788.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:11 Heat of formation + Delta-G solvation = 55.600867 kcal Electronic energy + Delta-G solvation = -20462.894004 eV Core-core repulsion = 17391.851044 eV Total energy + Delta-G solvation = -3071.042960 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.100 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.16597 -38.44994 -37.20673 -34.87786 -33.30769 -31.94939 -29.71319 -29.42426 -29.10893 -26.95376 -25.16841 -22.91258 -22.11492 -21.21008 -20.92443 -19.84988 -17.59357 -17.15515 -16.82364 -16.18666 -15.73085 -15.44741 -14.83182 -14.66750 -14.36497 -13.94248 -13.11104 -12.84718 -12.79880 -12.48654 -12.26977 -12.05421 -11.86008 -11.62054 -11.25511 -11.13244 -11.02140 -10.62365 -10.43889 -9.93501 -9.66136 -9.51748 -9.39771 -8.93750 -8.37876 -7.90914 -7.27947 -6.68010 -6.29698 -4.31830 1.07515 1.56714 2.52912 2.89284 3.06425 3.10262 3.13624 3.22506 3.32764 3.85644 3.99346 4.13849 4.61529 4.74871 4.93658 5.13629 5.37430 5.44608 5.59801 5.63263 5.80628 5.86857 6.26661 6.33909 6.45383 6.52032 6.58836 6.60837 6.78601 6.89449 7.09599 7.14697 7.32202 7.40672 7.45015 7.83543 7.95454 8.07816 8.18045 8.47950 8.62263 8.81916 9.01131 9.08830 10.30120 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.025291 B = 0.004548 C = 0.004460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.838819 B = 6155.188327 C = 6276.142270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.799 5.799 2 C 0.075 3.925 3 Si 0.908 3.092 4 H -0.265 1.265 5 H -0.280 1.280 6 H -0.266 1.266 7 C -0.463 4.463 8 H 0.076 0.924 9 C 0.135 3.865 10 C -0.249 4.249 11 C -0.070 4.070 12 C -0.281 4.281 13 C 0.207 3.793 14 N -0.712 5.712 15 C 0.195 3.805 16 C -0.114 4.114 17 C -0.126 4.126 18 C -0.091 4.091 19 C -0.128 4.128 20 C -0.225 4.225 21 C 0.011 3.989 22 O -0.176 6.176 23 C 0.051 3.949 24 C -0.216 4.216 25 H 0.277 0.723 26 H 0.090 0.910 27 H 0.086 0.914 28 H 0.083 0.917 29 H 0.401 0.599 30 H 0.134 0.866 31 H 0.128 0.872 32 H 0.123 0.877 33 H 0.154 0.846 34 H 0.203 0.797 35 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.171 -8.822 -3.595 13.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C -0.142 4.142 3 Si 0.733 3.267 4 H -0.190 1.190 5 H -0.205 1.205 6 H -0.191 1.191 7 C -0.493 4.493 8 H 0.094 0.906 9 C 0.132 3.868 10 C -0.269 4.269 11 C -0.089 4.089 12 C -0.303 4.303 13 C 0.111 3.889 14 N -0.343 5.343 15 C 0.099 3.901 16 C -0.134 4.134 17 C -0.144 4.144 18 C -0.110 4.110 19 C -0.129 4.129 20 C -0.244 4.244 21 C -0.055 4.055 22 O -0.076 6.076 23 C 0.001 3.999 24 C -0.239 4.239 25 H 0.088 0.912 26 H 0.108 0.892 27 H 0.105 0.895 28 H 0.101 0.899 29 H 0.237 0.763 30 H 0.152 0.848 31 H 0.146 0.854 32 H 0.141 0.859 33 H 0.172 0.828 34 H 0.220 0.780 35 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -9.240 -8.529 -3.439 13.036 hybrid contribution 0.039 0.832 0.080 0.837 sum -9.201 -7.696 -3.359 12.457 Atomic orbital electron populations 1.69832 1.07374 1.28754 1.36544 1.25876 0.94770 1.01065 0.92453 0.86379 0.80036 0.80447 0.79845 1.18962 1.20474 1.19114 1.19520 0.96235 0.90648 1.42936 0.90624 1.17324 0.90482 0.91914 0.87096 1.20922 1.03590 0.93192 1.09234 1.20277 0.94822 0.96315 0.97453 1.19904 1.02160 0.94753 1.13483 1.17649 0.85004 0.94514 0.91732 1.41851 1.25276 1.09500 1.57702 1.16454 0.92842 0.90540 0.90219 1.21200 1.00243 0.94635 0.97320 1.20842 0.97974 0.96763 0.98866 1.20417 0.99900 0.99342 0.91298 1.19891 1.00671 0.96669 0.95716 1.22414 1.06564 1.02244 0.93175 1.24028 0.92611 0.90829 0.98028 1.84194 1.53959 1.46732 1.22692 1.20272 0.99042 0.95060 0.85564 1.20861 1.01214 0.94705 1.07137 0.91165 0.89209 0.89543 0.89876 0.76257 0.84772 0.85450 0.85893 0.82828 0.78001 0.85842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.08 10.75 55.55 0.60 -20.48 16 2 C 0.07 1.92 5.24 -17.34 -0.09 1.83 16 3 Si 0.91 19.05 29.58 -169.99 -5.03 14.02 16 4 H -0.26 -5.49 7.11 56.52 0.40 -5.09 16 5 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 6 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 7 C -0.46 -12.58 9.07 -37.74 -0.34 -12.92 16 8 H 0.08 1.97 7.88 -52.49 -0.41 1.56 16 9 C 0.13 3.71 5.57 -106.85 -0.60 3.11 16 10 C -0.25 -6.40 9.79 -38.83 -0.38 -6.78 16 11 C -0.07 -1.67 10.02 -39.69 -0.40 -2.07 16 12 C -0.28 -6.75 9.19 -39.08 -0.36 -7.11 16 13 C 0.21 4.99 6.58 -83.83 -0.55 4.44 16 14 N -0.71 -14.51 5.41 -8.38 -0.05 -14.56 16 15 C 0.19 3.56 4.56 -83.63 -0.38 3.18 16 16 C -0.11 -1.72 9.94 -39.33 -0.39 -2.11 16 17 C -0.13 -1.60 10.02 -39.61 -0.40 -2.00 16 18 C -0.09 -1.20 10.10 -39.26 -0.40 -1.60 16 19 C -0.13 -1.99 6.39 -105.18 -0.67 -2.66 16 20 C -0.22 -2.96 11.14 -37.62 -0.42 -3.38 16 21 C 0.01 0.15 11.96 29.25 0.35 0.50 16 22 O -0.18 -3.34 10.58 3.78 0.04 -3.30 16 23 C 0.05 0.93 6.84 -38.34 -0.26 0.67 16 24 C -0.22 -5.72 8.52 -38.67 -0.33 -6.05 16 25 H 0.28 6.71 8.30 -40.82 -0.34 6.37 16 26 H 0.09 2.17 8.06 -52.48 -0.42 1.75 16 27 H 0.09 1.83 8.06 -52.49 -0.42 1.40 16 28 H 0.08 1.93 6.78 -52.49 -0.36 1.57 16 29 H 0.40 7.54 8.84 -40.82 -0.36 7.18 16 30 H 0.13 1.83 8.06 -52.49 -0.42 1.40 16 31 H 0.13 1.21 8.06 -52.48 -0.42 0.79 16 32 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 33 H 0.15 1.49 8.06 -52.49 -0.42 1.07 16 34 H 0.20 1.91 8.06 -52.49 -0.42 1.49 16 35 H 0.12 3.35 6.07 -52.49 -0.32 3.03 16 LS Contribution 306.84 15.07 4.62 4.62 Total: -1.00 -30.76 306.84 -8.97 -39.74 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: -3.54 Total: 12.91 kcal Atomic # 6 Polarization: -27.34 SS G_CDS: -5.62 Total: -32.95 kcal Atomic # 7 Polarization: -35.59 SS G_CDS: 0.55 Total: -35.04 kcal Atomic # 8 Polarization: -3.34 SS G_CDS: 0.04 Total: -3.30 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -5.03 Total: 14.02 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -30.76 -8.97 -39.74 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001249916788.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.337 kcal (2) G-P(sol) polarization free energy of solvation -30.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds