Wall clock time and date at job start Wed Apr 15 2020 11:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48499 * 109.47094 * 269.99976 * 3 2 1 5 5 H 1.48505 * 109.47195 * 29.99857 * 3 2 1 6 6 H 1.48493 * 109.47449 * 149.99822 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.50703 * 109.47064 * 179.97438 * 9 7 2 11 11 C 1.38361 * 119.85288 * 269.72818 * 10 9 7 12 12 C 1.37958 * 120.14261 * 179.72686 * 11 10 9 13 13 C 1.39575 * 119.85460 * 0.51953 * 12 11 10 14 14 C 1.47821 * 120.14587 * 179.72838 * 13 12 11 15 15 N 1.30877 * 124.97634 * 0.02562 * 14 13 12 16 16 C 1.35766 * 108.75807 * 179.97438 * 15 14 13 17 17 C 1.39715 * 133.67210 * 179.97438 * 16 15 14 18 18 C 1.37663 * 119.73016 * 179.97438 * 17 16 15 19 19 C 1.38729 * 120.42859 * 0.04682 * 18 17 16 20 20 C 1.37952 * 120.49619 * 359.95092 * 19 18 17 21 21 C 1.38634 * 119.89826 * 0.02562 * 20 19 18 22 22 O 1.34644 * 124.97866 * 179.71860 * 14 13 12 23 23 C 1.39572 * 119.70944 * 359.75166 * 13 12 11 24 24 C 1.37962 * 119.85635 * 359.97438 * 23 13 12 25 25 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 27 27 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 28 28 H 1.08001 * 119.92518 * 359.97438 * 11 10 9 29 29 H 1.07997 * 120.06901 * 180.26927 * 12 11 10 30 30 H 1.08005 * 120.13710 * 0.04010 * 17 16 15 31 31 H 1.07995 * 119.78874 * 179.97438 * 18 17 16 32 32 H 1.07996 * 119.75534 * 179.97438 * 19 18 17 33 33 H 1.07993 * 120.05498 * 180.02562 * 20 19 18 34 34 H 1.08004 * 120.07414 * 179.97438 * 23 13 12 35 35 H 1.07995 * 119.93266 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2302 -3.6447 0.0005 11 6 2.6734 -4.1719 -1.1995 12 6 3.5742 -5.2168 -1.2065 13 6 4.0300 -5.7492 0.0005 14 6 4.9906 -6.8728 0.0005 15 7 5.4781 -7.4431 -1.0719 16 6 6.3256 -8.4336 -0.6927 17 6 7.1109 -9.3524 -1.3936 18 6 7.8853 -10.2563 -0.7020 19 6 7.8899 -10.2609 0.6853 20 6 7.1198 -9.3598 1.3910 21 6 6.3339 -8.4417 0.7117 22 8 5.4966 -7.4557 1.1037 23 6 3.5746 -5.2165 1.2075 24 6 2.6782 -4.1678 1.2005 25 1 -0.4850 0.8401 0.0004 26 1 0.6239 -2.5567 0.8903 27 1 0.6246 -2.5571 -0.8897 28 1 2.3165 -3.7618 -2.1327 29 1 3.9226 -5.6245 -2.1438 30 1 7.1111 -9.3529 -2.4736 31 1 8.4923 -10.9672 -1.2428 32 1 8.5012 -10.9751 1.2169 33 1 7.1291 -9.3694 2.4708 34 1 3.9232 -5.6242 2.1449 35 1 2.3247 -3.7549 2.1337 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250058178.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:23 Heat of formation + Delta-G solvation = 52.400181 kcal Electronic energy + Delta-G solvation = -19421.654580 eV Core-core repulsion = 16350.472827 eV Total energy + Delta-G solvation = -3071.181753 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.100 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.21329 -38.87815 -38.03914 -34.84447 -33.67470 -31.90106 -30.90384 -30.49863 -29.58707 -27.28749 -24.35163 -23.37070 -22.55076 -22.08728 -21.62408 -20.30103 -18.09199 -17.52944 -16.75300 -16.58894 -16.37640 -15.16734 -14.80598 -14.63883 -14.30357 -14.23551 -13.88761 -13.04388 -12.90975 -12.87192 -12.61532 -12.47759 -12.16214 -11.68909 -11.58302 -11.39826 -11.24536 -10.84996 -10.64343 -10.52465 -10.35532 -9.75436 -9.60818 -9.05342 -8.82411 -8.56052 -8.49868 -7.74903 -6.12722 -4.17511 0.35041 1.03366 1.52444 1.84658 2.39261 2.70917 3.26512 3.33141 3.37120 3.48725 3.72742 4.23574 4.35905 4.42345 4.63646 4.90681 4.97431 4.98920 5.20606 5.21773 5.29708 5.36285 5.64558 5.76502 5.82898 5.88591 5.96219 6.07060 6.10895 6.12095 6.39411 6.42391 6.44890 6.72722 6.92823 6.97391 7.33187 7.46882 7.60959 7.66386 7.82498 8.19026 8.87519 9.47127 10.97075 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.041350 B = 0.002978 C = 0.002968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.977533 B = 9400.116913 C = 9431.663297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.897 3.103 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.516 4.516 8 H 0.059 0.941 9 C 0.042 3.958 10 C 0.002 3.998 11 C -0.131 4.131 12 C -0.058 4.058 13 C -0.080 4.080 14 C 0.324 3.676 15 N -0.489 5.489 16 C 0.033 3.967 17 C -0.068 4.068 18 C -0.120 4.120 19 C -0.104 4.104 20 C -0.089 4.089 21 C -0.001 4.001 22 O -0.211 6.211 23 C -0.077 4.077 24 C -0.130 4.130 25 H 0.263 0.737 26 H 0.034 0.966 27 H 0.034 0.966 28 H 0.131 0.869 29 H 0.130 0.870 30 H 0.135 0.865 31 H 0.135 0.865 32 H 0.138 0.862 33 H 0.134 0.866 34 H 0.123 0.877 35 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.613 -18.677 1.038 22.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.142 4.142 3 Si 0.725 3.275 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.554 4.554 8 H 0.077 0.923 9 C 0.005 3.995 10 C 0.002 3.998 11 C -0.149 4.149 12 C -0.077 4.077 13 C -0.082 4.082 14 C 0.118 3.882 15 N -0.218 5.218 16 C -0.080 4.080 17 C -0.087 4.087 18 C -0.140 4.140 19 C -0.122 4.122 20 C -0.108 4.108 21 C -0.052 4.052 22 O -0.103 6.103 23 C -0.097 4.097 24 C -0.148 4.148 25 H 0.073 0.927 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.149 0.851 29 H 0.148 0.852 30 H 0.153 0.847 31 H 0.153 0.847 32 H 0.156 0.844 33 H 0.152 0.848 34 H 0.141 0.859 35 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 12.337 -18.417 0.424 22.172 hybrid contribution 0.650 0.770 0.744 1.253 sum 12.988 -17.647 1.169 21.943 Atomic orbital electron populations 1.69948 1.06056 1.27027 1.50031 1.25004 0.94905 0.99338 0.94956 0.86505 0.79824 0.82945 0.78275 1.20497 1.21102 1.19741 1.21003 0.93097 0.89577 1.51692 0.92297 1.18486 0.92586 0.89462 0.98955 1.21049 0.93668 0.93266 0.91850 1.21102 0.98393 0.96448 0.98992 1.21093 0.95232 0.95090 0.96310 1.17185 1.00072 0.95385 0.95537 1.24244 0.92999 0.93166 0.77786 1.70899 1.13137 1.09711 1.28011 1.19972 0.99274 0.97387 0.91321 1.20333 0.94891 0.93222 1.00262 1.21009 0.99616 0.99111 0.94221 1.20965 0.98785 0.98311 0.94185 1.19876 0.96535 0.94114 1.00273 1.20392 0.96828 0.93212 0.94730 1.84563 1.49593 1.40173 1.35953 1.21147 0.96364 0.96019 0.96172 1.21056 0.98386 0.96366 0.98994 0.92692 0.94807 0.94790 0.85115 0.85160 0.84729 0.84712 0.84427 0.84842 0.85925 0.85251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.55 13.29 55.43 0.74 -24.82 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 21.01 29.54 -169.99 -5.02 15.99 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 6 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.52 -13.85 9.09 -34.44 -0.31 -14.17 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 9 C 0.04 1.02 5.10 -29.03 -0.15 0.87 16 10 C 0.00 0.05 5.08 -104.53 -0.53 -0.48 16 11 C -0.13 -2.41 9.68 -39.64 -0.38 -2.80 16 12 C -0.06 -0.98 9.67 -39.19 -0.38 -1.36 16 13 C -0.08 -1.36 5.87 -104.98 -0.62 -1.98 16 14 C 0.32 5.44 7.84 -14.04 -0.11 5.33 16 15 N -0.49 -8.21 10.89 -9.31 -0.10 -8.32 16 16 C 0.03 0.49 7.23 -84.74 -0.61 -0.12 16 17 C -0.07 -0.76 10.10 -39.24 -0.40 -1.16 16 18 C -0.12 -1.01 10.02 -39.61 -0.40 -1.41 16 19 C -0.10 -0.85 10.03 -39.50 -0.40 -1.24 16 20 C -0.09 -0.93 10.06 -39.54 -0.40 -1.33 16 21 C 0.00 -0.02 7.42 -38.60 -0.29 -0.30 16 22 O -0.21 -3.34 10.45 2.37 0.02 -3.32 16 23 C -0.08 -1.27 9.71 -39.19 -0.38 -1.65 16 24 C -0.13 -2.36 9.68 -39.64 -0.38 -2.75 16 25 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 26 H 0.03 0.86 8.08 -51.93 -0.42 0.44 16 27 H 0.03 0.86 8.08 -51.93 -0.42 0.44 16 28 H 0.13 2.28 8.06 -52.49 -0.42 1.86 16 29 H 0.13 2.02 7.80 -52.49 -0.41 1.61 16 30 H 0.13 1.28 8.06 -52.48 -0.42 0.86 16 31 H 0.14 0.71 8.06 -52.49 -0.42 0.28 16 32 H 0.14 0.66 8.06 -52.49 -0.42 0.24 16 33 H 0.13 1.09 8.06 -52.49 -0.42 0.66 16 34 H 0.12 1.74 7.87 -52.48 -0.41 1.33 16 35 H 0.13 2.23 8.06 -52.49 -0.42 1.80 16 LS Contribution 313.74 15.07 4.73 4.73 Total: -1.00 -30.23 313.74 -9.20 -39.43 By element: Atomic # 1 Polarization: 3.04 SS G_CDS: -3.74 Total: -0.70 kcal Atomic # 6 Polarization: -17.17 SS G_CDS: -5.83 Total: -23.00 kcal Atomic # 7 Polarization: -33.77 SS G_CDS: 0.64 Total: -33.13 kcal Atomic # 8 Polarization: -3.34 SS G_CDS: 0.02 Total: -3.32 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -30.23 -9.20 -39.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250058178.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.828 kcal (2) G-P(sol) polarization free energy of solvation -30.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds