Wall clock time and date at job start Wed Apr 15 2020 11:43:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48499 * 109.47094 * 269.99976 * 3 2 1 5 5 H 1.48505 * 109.47195 * 29.99857 * 3 2 1 6 6 H 1.48493 * 109.47449 * 149.99822 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.50703 * 109.47064 * 179.97438 * 9 7 2 11 11 C 1.38361 * 119.85288 * 269.72818 * 10 9 7 12 12 C 1.37958 * 120.14261 * 179.72686 * 11 10 9 13 13 C 1.39575 * 119.85460 * 0.51953 * 12 11 10 14 14 C 1.47821 * 120.14587 * 179.72838 * 13 12 11 15 15 N 1.30877 * 124.97634 * 0.02562 * 14 13 12 16 16 C 1.35766 * 108.75807 * 179.97438 * 15 14 13 17 17 C 1.39715 * 133.67210 * 179.97438 * 16 15 14 18 18 C 1.37663 * 119.73016 * 179.97438 * 17 16 15 19 19 C 1.38729 * 120.42859 * 0.04682 * 18 17 16 20 20 C 1.37952 * 120.49619 * 359.95092 * 19 18 17 21 21 C 1.38634 * 119.89826 * 0.02562 * 20 19 18 22 22 O 1.34644 * 124.97866 * 179.71860 * 14 13 12 23 23 C 1.39572 * 119.70944 * 359.75166 * 13 12 11 24 24 C 1.37962 * 119.85635 * 359.97438 * 23 13 12 25 25 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 27 27 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 28 28 H 1.08001 * 119.92518 * 359.97438 * 11 10 9 29 29 H 1.07997 * 120.06901 * 180.26927 * 12 11 10 30 30 H 1.08005 * 120.13710 * 0.04010 * 17 16 15 31 31 H 1.07995 * 119.78874 * 179.97438 * 18 17 16 32 32 H 1.07996 * 119.75534 * 179.97438 * 19 18 17 33 33 H 1.07993 * 120.05498 * 180.02562 * 20 19 18 34 34 H 1.08004 * 120.07414 * 179.97438 * 23 13 12 35 35 H 1.07995 * 119.93266 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2302 -3.6447 0.0005 11 6 2.6734 -4.1719 -1.1995 12 6 3.5742 -5.2168 -1.2065 13 6 4.0300 -5.7492 0.0005 14 6 4.9906 -6.8728 0.0005 15 7 5.4781 -7.4431 -1.0719 16 6 6.3256 -8.4336 -0.6927 17 6 7.1109 -9.3524 -1.3936 18 6 7.8853 -10.2563 -0.7020 19 6 7.8899 -10.2609 0.6853 20 6 7.1198 -9.3598 1.3910 21 6 6.3339 -8.4417 0.7117 22 8 5.4966 -7.4557 1.1037 23 6 3.5746 -5.2165 1.2075 24 6 2.6782 -4.1678 1.2005 25 1 -0.4850 0.8401 0.0004 26 1 0.6239 -2.5567 0.8903 27 1 0.6246 -2.5571 -0.8897 28 1 2.3165 -3.7618 -2.1327 29 1 3.9226 -5.6245 -2.1438 30 1 7.1111 -9.3529 -2.4736 31 1 8.4923 -10.9672 -1.2428 32 1 8.5012 -10.9751 1.2169 33 1 7.1291 -9.3694 2.4708 34 1 3.9232 -5.6242 2.1449 35 1 2.3247 -3.7549 2.1337 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250058178.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:20 Heat of formation + Delta-G solvation = 35.223512 kcal Electronic energy + Delta-G solvation = -19422.399416 eV Core-core repulsion = 16350.472827 eV Total energy + Delta-G solvation = -3071.926589 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.100 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -44.26896 -40.26894 -38.91413 -36.03602 -35.44883 -33.55752 -32.01922 -31.59450 -30.82712 -28.85418 -25.95135 -24.46327 -23.84712 -23.32512 -22.76988 -21.73962 -19.04973 -18.62756 -18.49057 -17.86663 -17.56494 -16.78914 -16.03060 -15.95452 -15.81105 -15.08874 -14.82007 -14.58829 -14.40986 -14.37542 -13.80537 -13.51885 -13.32441 -13.21887 -13.12604 -12.63653 -12.54811 -12.53082 -12.42354 -11.93907 -11.58202 -11.56435 -11.48888 -10.60561 -10.18803 -9.94318 -9.76580 -9.03795 -8.21003 -6.33893 -0.71953 0.19399 0.35072 0.44398 1.33023 1.41349 1.41590 1.51456 1.54618 2.39767 2.63693 2.63925 2.86902 3.10819 3.46269 3.83715 3.88734 4.00878 4.11820 4.15555 4.24669 4.27599 4.39167 4.51395 4.56085 4.76549 4.91354 5.00428 5.05943 5.13788 5.29411 5.29869 5.33994 5.34403 5.38253 5.45824 5.72374 5.73444 5.91511 5.93748 6.15890 6.49288 6.78511 7.34809 8.88253 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.041350 B = 0.002978 C = 0.002968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.977533 B = 9400.116913 C = 9431.663297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.008 3.992 3 Si 0.963 3.037 4 H -0.273 1.273 5 H -0.280 1.280 6 H -0.267 1.267 7 C -0.530 4.530 8 H 0.056 0.944 9 C 0.051 3.949 10 C -0.027 4.027 11 C -0.132 4.132 12 C -0.056 4.056 13 C -0.072 4.072 14 C 0.298 3.702 15 N -0.500 5.500 16 C -0.008 4.008 17 C -0.080 4.080 18 C -0.106 4.106 19 C -0.082 4.082 20 C -0.101 4.101 21 C -0.025 4.025 22 O -0.220 6.220 23 C -0.071 4.071 24 C -0.131 4.131 25 H 0.266 0.734 26 H 0.013 0.987 27 H 0.012 0.988 28 H 0.133 0.867 29 H 0.143 0.857 30 H 0.145 0.855 31 H 0.176 0.824 32 H 0.183 0.817 33 H 0.155 0.845 34 H 0.147 0.853 35 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.810 -21.065 1.463 26.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.191 4.191 3 Si 0.788 3.212 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.191 1.191 7 C -0.567 4.567 8 H 0.074 0.926 9 C 0.014 3.986 10 C -0.027 4.027 11 C -0.150 4.150 12 C -0.075 4.075 13 C -0.073 4.073 14 C 0.091 3.909 15 N -0.230 5.230 16 C -0.120 4.120 17 C -0.099 4.099 18 C -0.125 4.125 19 C -0.099 4.099 20 C -0.119 4.119 21 C -0.074 4.074 22 O -0.112 6.112 23 C -0.090 4.090 24 C -0.149 4.149 25 H 0.075 0.925 26 H 0.032 0.968 27 H 0.030 0.970 28 H 0.151 0.849 29 H 0.161 0.839 30 H 0.163 0.837 31 H 0.194 0.806 32 H 0.200 0.800 33 H 0.173 0.827 34 H 0.165 0.835 35 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 15.548 -20.823 0.852 26.001 hybrid contribution -0.140 1.197 0.599 1.346 sum 15.408 -19.626 1.452 24.994 Atomic orbital electron populations 1.70063 1.07566 1.28005 1.51093 1.25867 0.95729 1.02945 0.94563 0.85471 0.78625 0.78614 0.78517 1.19810 1.20534 1.19090 1.21340 0.93155 0.91023 1.51226 0.92591 1.18215 0.92893 0.90651 0.96816 1.20733 0.94806 0.93583 0.93612 1.21091 0.98650 0.96827 0.98441 1.21141 0.94754 0.94534 0.97105 1.17340 0.99328 0.95038 0.95606 1.24000 0.94384 0.94131 0.78408 1.70784 1.13364 1.10280 1.28581 1.20430 1.00763 0.98504 0.92327 1.20720 0.94856 0.93144 1.01156 1.21560 0.98123 0.98131 0.94680 1.21601 0.96907 0.97141 0.94291 1.20386 0.96174 0.93654 1.01700 1.21005 0.97514 0.93758 0.95128 1.84500 1.50155 1.40855 1.35672 1.21291 0.95443 0.95104 0.97160 1.21086 0.98619 0.96775 0.98384 0.92507 0.96849 0.96976 0.84905 0.83892 0.83679 0.80619 0.79961 0.82704 0.83507 0.84779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.67 13.29 21.45 0.28 -54.38 16 2 C 0.01 0.42 5.46 84.66 0.46 0.88 16 3 Si 0.96 43.61 29.54 68.60 2.03 45.64 16 4 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 5 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 6 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 7 C -0.53 -29.37 9.09 25.60 0.23 -29.14 16 8 H 0.06 3.06 7.74 -2.91 -0.02 3.04 16 9 C 0.05 2.62 5.10 29.10 0.15 2.77 16 10 C -0.03 -1.13 5.08 -19.81 -0.10 -1.23 16 11 C -0.13 -5.03 9.68 22.23 0.22 -4.81 16 12 C -0.06 -1.93 9.67 22.53 0.22 -1.71 16 13 C -0.07 -2.45 5.87 -20.10 -0.12 -2.56 16 14 C 0.30 10.04 7.84 87.37 0.69 10.72 16 15 N -0.50 -16.86 10.89 -297.49 -3.24 -20.10 16 16 C -0.01 -0.23 7.23 39.43 0.29 0.06 16 17 C -0.08 -1.60 10.10 22.49 0.23 -1.37 16 18 C -0.11 -1.28 10.02 22.25 0.22 -1.06 16 19 C -0.08 -0.91 10.03 22.32 0.22 -0.69 16 20 C -0.10 -1.77 10.06 22.30 0.22 -1.55 16 21 C -0.02 -0.67 7.42 22.90 0.17 -0.50 16 22 O -0.22 -6.91 10.45 -14.45 -0.15 -7.07 16 23 C -0.07 -2.31 9.71 22.53 0.22 -2.10 16 24 C -0.13 -4.86 9.68 22.23 0.22 -4.65 16 25 H 0.27 14.73 8.31 -92.71 -0.77 13.96 16 26 H 0.01 0.72 8.08 -2.39 -0.02 0.70 16 27 H 0.01 0.65 8.08 -2.39 -0.02 0.63 16 28 H 0.13 4.86 8.06 -2.91 -0.02 4.83 16 29 H 0.14 4.48 7.80 -2.91 -0.02 4.46 16 30 H 0.15 2.45 8.06 -2.91 -0.02 2.43 16 31 H 0.18 0.72 8.06 -2.91 -0.02 0.69 16 32 H 0.18 0.47 8.06 -2.91 -0.02 0.44 16 33 H 0.16 1.98 8.06 -2.91 -0.02 1.96 16 34 H 0.15 4.04 7.87 -2.91 -0.02 4.02 16 35 H 0.13 4.75 8.06 -2.91 -0.02 4.72 16 Total: -1.00 -68.41 313.74 3.55 -64.86 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: 1.10 Total: 7.98 kcal Atomic # 6 Polarization: -40.45 SS G_CDS: 3.53 Total: -36.92 kcal Atomic # 7 Polarization: -71.53 SS G_CDS: -2.95 Total: -74.49 kcal Atomic # 8 Polarization: -6.91 SS G_CDS: -0.15 Total: -7.07 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Total: -68.41 3.55 -64.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250058178.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.081 kcal (2) G-P(sol) polarization free energy of solvation -68.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.857 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds