Wall clock time and date at job start Wed Apr 15 2020 11:43:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86794 * 120.00180 * 2 1 4 4 H 1.48501 * 109.47212 * 270.00116 * 3 2 1 5 5 H 1.48509 * 109.47114 * 30.00044 * 3 2 1 6 6 H 1.48496 * 109.47394 * 149.99960 * 3 2 1 7 7 C 1.37876 * 119.99991 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99894 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00282 * 180.02562 * 7 2 1 10 10 N 1.46498 * 109.47425 * 180.02562 * 9 7 2 11 11 C 1.34773 * 120.00227 * 179.97438 * 10 9 7 12 12 O 1.21280 * 119.99662 * 359.97438 * 11 10 9 13 13 C 1.50693 * 120.00280 * 179.97438 * 11 10 9 14 14 H 1.09005 * 109.69734 * 60.56009 * 13 11 10 15 15 C 1.53412 * 109.70020 * 299.99961 * 13 11 10 16 16 O 1.42829 * 108.37698 * 175.53103 * 15 13 11 17 17 C 1.35900 * 117.85623 * 49.16752 * 16 15 13 18 18 C 1.39135 * 118.46329 * 163.00369 * 17 16 15 19 19 C 1.37961 * 120.25204 * 179.76150 * 18 17 16 20 20 C 1.38485 * 119.93075 * 359.93900 * 19 18 17 21 21 F 1.35094 * 120.03470 * 179.79820 * 20 19 18 22 22 C 1.38293 * 119.92716 * 0.06884 * 20 19 18 23 23 C 1.38347 * 121.80200 * 342.81524 * 17 16 15 24 24 C 1.50776 * 121.40580 * 0.45831 * 23 17 16 25 25 H 0.97006 * 120.00098 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47226 * 59.99731 * 9 7 2 27 27 H 1.09009 * 109.46601 * 299.99865 * 9 7 2 28 28 H 0.96997 * 120.00099 * 359.97438 * 10 9 7 29 29 H 1.09002 * 109.67854 * 55.81534 * 15 13 11 30 30 H 1.08994 * 109.71931 * 295.27937 * 15 13 11 31 31 H 1.08000 * 119.87375 * 359.73221 * 18 17 16 32 32 H 1.08004 * 120.03844 * 179.97438 * 19 18 17 33 33 H 1.07994 * 119.84540 * 180.02562 * 22 20 19 34 34 H 1.08997 * 109.43725 * 222.11323 * 24 23 17 35 35 H 1.09003 * 109.43217 * 102.24230 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4644 -2.1294 0.0014 9 6 3.5115 -1.1941 0.0011 10 7 3.9998 -2.5753 0.0010 11 6 5.3248 -2.8216 0.0009 12 8 6.1129 -1.8998 0.0005 13 6 5.8272 -4.2424 0.0014 14 1 5.4740 -4.7572 -0.8921 15 6 5.3188 -4.9702 1.2526 16 8 5.7222 -6.3380 1.1728 17 6 7.0231 -6.6004 0.8800 18 6 7.5188 -7.8732 1.1452 19 6 8.8325 -8.1812 0.8579 20 6 9.6617 -7.2212 0.3022 21 9 10.9496 -7.5193 0.0238 22 6 9.1714 -5.9554 0.0379 23 6 7.8536 -5.6420 0.3271 24 6 7.3576 -4.2495 0.0300 25 1 -0.4850 0.8401 0.0004 26 1 3.8745 -0.6801 0.8911 27 1 3.8751 -0.6805 -0.8889 28 1 3.3695 -3.3126 0.0010 29 1 4.2313 -4.9101 1.2958 30 1 5.7475 -4.5124 2.1440 31 1 6.8728 -8.6227 1.5780 32 1 9.2138 -9.1701 1.0655 33 1 9.8191 -5.2079 -0.3958 34 1 7.7399 -3.9273 -0.9385 35 1 7.7091 -3.5666 0.8034 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320935251.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:28 Heat of formation + Delta-G solvation = -105.186503 kcal Electronic energy + Delta-G solvation = -20837.532375 eV Core-core repulsion = 17328.747926 eV Total energy + Delta-G solvation = -3508.784449 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.106 amu Computer time = -1.03 seconds Orbital eigenvalues (eV) -49.02413 -41.07597 -39.08860 -37.46974 -34.63770 -34.21183 -32.49062 -31.10453 -30.13783 -28.06661 -25.89670 -24.63476 -23.05017 -22.24041 -20.82415 -19.68231 -18.14182 -17.88070 -17.25286 -17.02855 -16.16704 -15.77633 -15.49600 -15.25674 -15.01651 -14.62160 -14.46034 -14.01165 -13.72369 -13.57396 -13.37327 -13.20504 -13.05515 -12.65530 -12.35960 -12.22136 -11.47557 -11.32846 -11.10002 -10.97256 -10.84161 -10.77888 -10.04186 -9.58381 -9.41188 -9.20226 -8.85924 -8.31672 -8.29357 -6.28139 -4.31380 0.87636 0.95506 2.90435 3.01861 3.21471 3.28342 3.30701 3.35703 3.67879 4.06469 4.26916 4.35529 4.42501 4.46451 4.63850 4.80114 4.92645 5.07062 5.09389 5.14009 5.32563 5.37733 5.46382 5.58881 5.76867 5.86547 5.88822 5.92993 6.08937 6.44942 6.68923 6.96213 7.04679 7.13738 7.28274 8.00066 8.37448 8.63261 8.75461 9.31094 10.83668 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.042950 B = 0.003332 C = 0.003127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.764844 B = 8401.748246 C = 8951.240068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.079 3.921 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.261 1.261 7 C -0.547 4.547 8 H 0.080 0.920 9 C 0.219 3.781 10 N -0.701 5.701 11 C 0.509 3.491 12 O -0.550 6.550 13 C -0.148 4.148 14 H 0.111 0.889 15 C 0.071 3.929 16 O -0.307 6.307 17 C 0.122 3.878 18 C -0.119 4.119 19 C -0.124 4.124 20 C 0.063 3.937 21 F -0.143 7.143 22 C -0.117 4.117 23 C -0.124 4.124 24 C -0.061 4.061 25 H 0.268 0.732 26 H 0.027 0.973 27 H 0.022 0.978 28 H 0.397 0.603 29 H 0.120 0.880 30 H 0.074 0.926 31 H 0.141 0.859 32 H 0.140 0.860 33 H 0.139 0.861 34 H 0.092 0.908 35 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.278 -15.336 1.851 21.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.126 4.126 3 Si 0.703 3.297 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.185 1.185 7 C -0.584 4.584 8 H 0.098 0.902 9 C 0.097 3.903 10 N -0.350 5.350 11 C 0.293 3.707 12 O -0.429 6.429 13 C -0.170 4.170 14 H 0.129 0.871 15 C -0.004 4.004 16 O -0.220 6.220 17 C 0.076 3.924 18 C -0.138 4.138 19 C -0.143 4.143 20 C 0.044 3.956 21 F -0.121 7.121 22 C -0.136 4.136 23 C -0.125 4.125 24 C -0.098 4.098 25 H 0.078 0.922 26 H 0.045 0.955 27 H 0.040 0.960 28 H 0.231 0.769 29 H 0.137 0.863 30 H 0.093 0.907 31 H 0.159 0.841 32 H 0.158 0.842 33 H 0.157 0.843 34 H 0.110 0.890 35 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 15.523 -14.658 1.881 21.433 hybrid contribution 0.267 0.712 -0.208 0.789 sum 15.790 -13.946 1.672 21.134 Atomic orbital electron populations 1.69876 1.06224 1.27526 1.49109 1.24793 0.94794 0.99191 0.93785 0.86819 0.80538 0.83245 0.79085 1.19820 1.20833 1.18530 1.21068 0.88394 0.95292 1.53690 0.90176 1.19543 0.95403 0.78360 0.96952 1.46240 1.05502 1.11357 1.71871 1.20026 0.83367 0.89681 0.77651 1.90672 1.55503 1.45865 1.50874 1.22023 0.97636 0.96026 1.01287 0.87093 1.23038 1.01664 0.79020 0.96695 1.86054 1.22614 1.27868 1.85486 1.18758 0.83969 0.93869 0.95793 1.20432 0.94916 0.95458 1.02982 1.20895 0.93226 0.99619 1.00520 1.17488 0.79455 0.94613 1.04024 1.91485 1.34934 1.93773 1.91934 1.20877 0.95482 0.95593 1.01636 1.19759 0.93833 0.96797 1.02140 1.20341 0.92916 0.91924 1.04635 0.92168 0.95511 0.96007 0.76858 0.86251 0.90725 0.84084 0.84198 0.84349 0.88964 0.88647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.85 13.96 55.43 0.77 -25.08 16 2 C 0.08 2.16 5.47 -17.82 -0.10 2.06 16 3 Si 0.88 20.86 27.47 -169.99 -4.67 16.19 16 4 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.26 -6.14 6.54 56.52 0.37 -5.77 16 7 C -0.55 -14.43 9.83 -34.44 -0.34 -14.77 16 8 H 0.08 2.20 7.84 -52.48 -0.41 1.78 16 9 C 0.22 5.12 4.50 -5.20 -0.02 5.10 16 10 N -0.70 -13.05 5.42 -61.47 -0.33 -13.38 16 11 C 0.51 8.76 7.16 -10.99 -0.08 8.69 16 12 O -0.55 -11.50 15.81 5.56 0.09 -11.41 16 13 C -0.15 -1.87 2.76 -91.52 -0.25 -2.12 16 14 H 0.11 1.28 8.14 -51.93 -0.42 0.86 16 15 C 0.07 0.81 6.25 37.37 0.23 1.04 16 16 O -0.31 -3.59 10.27 -19.43 -0.20 -3.79 16 17 C 0.12 1.38 6.47 -39.21 -0.25 1.13 16 18 C -0.12 -1.14 9.93 -39.35 -0.39 -1.53 16 19 C -0.12 -1.12 10.02 -39.59 -0.40 -1.52 16 20 C 0.06 0.67 7.30 -39.47 -0.29 0.38 16 21 F -0.14 -1.57 17.27 2.25 0.04 -1.53 16 22 C -0.12 -1.24 9.64 -39.46 -0.38 -1.62 16 23 C -0.12 -1.41 5.75 -104.44 -0.60 -2.01 16 24 C -0.06 -0.74 4.66 -27.81 -0.13 -0.87 16 25 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 26 H 0.03 0.66 7.20 -51.93 -0.37 0.29 16 27 H 0.02 0.54 7.57 -51.92 -0.39 0.14 16 28 H 0.40 6.40 7.72 -40.82 -0.32 6.09 16 29 H 0.12 1.21 7.50 -51.93 -0.39 0.82 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 32 H 0.14 0.94 8.06 -52.48 -0.42 0.51 16 33 H 0.14 1.27 8.06 -52.49 -0.42 0.85 16 34 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.10 1.23 7.71 -51.93 -0.40 0.83 16 LS Contribution 303.13 15.07 4.57 4.57 Total: -1.00 -30.90 303.13 -6.72 -37.62 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -3.99 Total: 2.86 kcal Atomic # 6 Polarization: -3.05 SS G_CDS: -3.00 Total: -6.05 kcal Atomic # 7 Polarization: -38.90 SS G_CDS: 0.44 Total: -38.46 kcal Atomic # 8 Polarization: -15.09 SS G_CDS: -0.11 Total: -15.20 kcal Atomic # 9 Polarization: -1.57 SS G_CDS: 0.04 Total: -1.53 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -4.67 Total: 16.19 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -30.90 -6.72 -37.62 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320935251.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.569 kcal (2) G-P(sol) polarization free energy of solvation -30.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -1.03 seconds