Wall clock time and date at job start Wed Apr 15 2020 11:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86794 * 120.00180 * 2 1 4 4 H 1.48501 * 109.47212 * 270.00116 * 3 2 1 5 5 H 1.48509 * 109.47114 * 30.00044 * 3 2 1 6 6 H 1.48496 * 109.47394 * 149.99960 * 3 2 1 7 7 C 1.37876 * 119.99991 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99894 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00282 * 180.02562 * 7 2 1 10 10 N 1.46498 * 109.47425 * 180.02562 * 9 7 2 11 11 C 1.34773 * 120.00227 * 179.97438 * 10 9 7 12 12 O 1.21280 * 119.99662 * 359.97438 * 11 10 9 13 13 C 1.50693 * 120.00280 * 179.97438 * 11 10 9 14 14 H 1.09005 * 109.69734 * 60.56009 * 13 11 10 15 15 C 1.53412 * 109.70020 * 299.99961 * 13 11 10 16 16 O 1.42829 * 108.37698 * 175.53103 * 15 13 11 17 17 C 1.35900 * 117.85623 * 49.16752 * 16 15 13 18 18 C 1.39135 * 118.46329 * 163.00369 * 17 16 15 19 19 C 1.37961 * 120.25204 * 179.76150 * 18 17 16 20 20 C 1.38485 * 119.93075 * 359.93900 * 19 18 17 21 21 F 1.35094 * 120.03470 * 179.79820 * 20 19 18 22 22 C 1.38293 * 119.92716 * 0.06884 * 20 19 18 23 23 C 1.38347 * 121.80200 * 342.81524 * 17 16 15 24 24 C 1.50776 * 121.40580 * 0.45831 * 23 17 16 25 25 H 0.97006 * 120.00098 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47226 * 59.99731 * 9 7 2 27 27 H 1.09009 * 109.46601 * 299.99865 * 9 7 2 28 28 H 0.96997 * 120.00099 * 359.97438 * 10 9 7 29 29 H 1.09002 * 109.67854 * 55.81534 * 15 13 11 30 30 H 1.08994 * 109.71931 * 295.27937 * 15 13 11 31 31 H 1.08000 * 119.87375 * 359.73221 * 18 17 16 32 32 H 1.08004 * 120.03844 * 179.97438 * 19 18 17 33 33 H 1.07994 * 119.84540 * 180.02562 * 22 20 19 34 34 H 1.08997 * 109.43725 * 222.11323 * 24 23 17 35 35 H 1.09003 * 109.43217 * 102.24230 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4644 -2.1294 0.0014 9 6 3.5115 -1.1941 0.0011 10 7 3.9998 -2.5753 0.0010 11 6 5.3248 -2.8216 0.0009 12 8 6.1129 -1.8998 0.0005 13 6 5.8272 -4.2424 0.0014 14 1 5.4740 -4.7572 -0.8921 15 6 5.3188 -4.9702 1.2526 16 8 5.7222 -6.3380 1.1728 17 6 7.0231 -6.6004 0.8800 18 6 7.5188 -7.8732 1.1452 19 6 8.8325 -8.1812 0.8579 20 6 9.6617 -7.2212 0.3022 21 9 10.9496 -7.5193 0.0238 22 6 9.1714 -5.9554 0.0379 23 6 7.8536 -5.6420 0.3271 24 6 7.3576 -4.2495 0.0300 25 1 -0.4850 0.8401 0.0004 26 1 3.8745 -0.6801 0.8911 27 1 3.8751 -0.6805 -0.8889 28 1 3.3695 -3.3126 0.0010 29 1 4.2313 -4.9101 1.2958 30 1 5.7475 -4.5124 2.1440 31 1 6.8728 -8.6227 1.5780 32 1 9.2138 -9.1701 1.0655 33 1 9.8191 -5.2079 -0.3958 34 1 7.7399 -3.9273 -0.9385 35 1 7.7091 -3.5666 0.8034 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320935251.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:26 Heat of formation + Delta-G solvation = -125.286752 kcal Electronic energy + Delta-G solvation = -20838.403987 eV Core-core repulsion = 17328.747926 eV Total energy + Delta-G solvation = -3509.656061 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.106 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.84257 -42.02838 -40.43900 -38.31969 -36.28900 -35.30980 -34.43648 -32.09890 -30.94884 -29.85545 -26.81710 -25.80230 -23.96811 -23.80049 -22.07710 -20.94478 -19.30208 -18.98718 -18.38295 -18.11049 -17.56061 -16.99088 -16.64632 -16.47149 -16.11412 -16.00644 -15.43338 -15.31851 -15.03424 -14.64824 -14.42507 -14.27400 -14.19010 -13.98630 -13.85359 -13.58317 -13.07183 -12.71488 -12.35917 -12.16517 -11.94963 -11.86530 -11.71344 -11.65152 -10.92384 -10.88565 -10.02380 -9.96412 -9.12437 -8.39860 -6.47042 0.10285 0.15262 1.33004 1.36014 1.47131 1.55422 2.09021 2.27541 2.32586 2.53584 2.95842 3.20958 3.40808 3.50021 3.60228 3.74447 3.87202 4.08301 4.11498 4.30208 4.39635 4.47139 4.58474 4.78526 4.83398 4.83581 4.97235 5.02324 5.09356 5.13865 5.25213 5.25664 5.44900 5.67408 6.06456 6.28573 6.53992 6.75386 7.13588 7.31073 8.74750 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.042950 B = 0.003332 C = 0.003127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.764844 B = 8401.748246 C = 8951.240068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.027 3.973 3 Si 0.936 3.064 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.258 1.258 7 C -0.547 4.547 8 H 0.061 0.939 9 C 0.230 3.770 10 N -0.700 5.700 11 C 0.513 3.487 12 O -0.586 6.586 13 C -0.134 4.134 14 H 0.128 0.872 15 C 0.073 3.927 16 O -0.308 6.308 17 C 0.105 3.895 18 C -0.117 4.117 19 C -0.115 4.115 20 C 0.052 3.948 21 F -0.147 7.147 22 C -0.122 4.122 23 C -0.132 4.132 24 C -0.057 4.057 25 H 0.272 0.728 26 H 0.017 0.983 27 H 0.013 0.987 28 H 0.410 0.590 29 H 0.132 0.868 30 H 0.075 0.925 31 H 0.163 0.837 32 H 0.167 0.833 33 H 0.146 0.854 34 H 0.093 0.907 35 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.433 -16.566 2.035 23.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.174 4.174 3 Si 0.760 3.240 4 H -0.191 1.191 5 H -0.200 1.200 6 H -0.182 1.182 7 C -0.584 4.584 8 H 0.079 0.921 9 C 0.106 3.894 10 N -0.350 5.350 11 C 0.300 3.700 12 O -0.467 6.467 13 C -0.156 4.156 14 H 0.146 0.854 15 C -0.002 4.002 16 O -0.222 6.222 17 C 0.060 3.940 18 C -0.135 4.135 19 C -0.133 4.133 20 C 0.033 3.967 21 F -0.126 7.126 22 C -0.141 4.141 23 C -0.133 4.133 24 C -0.095 4.095 25 H 0.081 0.919 26 H 0.035 0.965 27 H 0.031 0.969 28 H 0.246 0.754 29 H 0.150 0.850 30 H 0.093 0.907 31 H 0.180 0.820 32 H 0.185 0.815 33 H 0.164 0.836 34 H 0.111 0.889 35 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 16.686 -15.926 2.065 23.158 hybrid contribution -0.057 0.988 -0.264 1.024 sum 16.628 -14.938 1.801 22.425 Atomic orbital electron populations 1.69980 1.07728 1.28603 1.50685 1.25590 0.95499 1.02659 0.93644 0.85877 0.79333 0.79418 0.79381 1.19142 1.20036 1.18231 1.21293 0.89952 0.94612 1.52582 0.92051 1.19144 0.93378 0.80883 0.95947 1.46056 1.06581 1.09956 1.72407 1.20684 0.82229 0.91254 0.75842 1.90656 1.56225 1.47629 1.52183 1.21935 0.98005 0.92722 1.02904 0.85410 1.23045 1.02372 0.79007 0.95769 1.86060 1.22957 1.27510 1.85656 1.19028 0.83882 0.94690 0.96419 1.20705 0.95322 0.95148 1.02319 1.21197 0.92733 1.00414 0.98974 1.17679 0.79504 0.94982 1.04517 1.91475 1.35298 1.93789 1.92043 1.20985 0.95385 0.96109 1.01604 1.19651 0.94249 0.96270 1.03152 1.20266 0.92353 0.92505 1.04351 0.91874 0.96533 0.96919 0.75363 0.85028 0.90720 0.81981 0.81537 0.83588 0.88904 0.89852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.52 13.96 21.45 0.30 -54.22 16 2 C 0.03 1.46 5.47 84.65 0.46 1.92 16 3 Si 0.94 42.86 27.47 68.60 1.88 44.74 16 4 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 5 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 6 H -0.26 -11.61 6.54 99.48 0.65 -10.96 16 7 C -0.55 -28.99 9.83 25.60 0.25 -28.74 16 8 H 0.06 3.41 7.84 -2.91 -0.02 3.39 16 9 C 0.23 10.68 4.50 85.63 0.38 11.06 16 10 N -0.70 -25.57 5.42 -466.80 -2.53 -28.10 16 11 C 0.51 17.27 7.16 87.66 0.63 17.89 16 12 O -0.59 -24.29 15.81 -3.03 -0.05 -24.34 16 13 C -0.13 -3.21 2.76 -11.38 -0.03 -3.24 16 14 H 0.13 2.68 8.14 -2.38 -0.02 2.66 16 15 C 0.07 1.54 6.25 72.12 0.45 1.99 16 16 O -0.31 -6.56 10.27 -92.42 -0.95 -7.51 16 17 C 0.11 2.16 6.47 22.51 0.15 2.31 16 18 C -0.12 -1.90 9.93 22.42 0.22 -1.68 16 19 C -0.11 -1.76 10.02 22.26 0.22 -1.53 16 20 C 0.05 1.00 7.30 22.34 0.16 1.16 16 21 F -0.15 -3.00 17.27 44.97 0.78 -2.23 16 22 C -0.12 -2.41 9.64 22.35 0.22 -2.19 16 23 C -0.13 -2.80 5.75 -19.75 -0.11 -2.91 16 24 C -0.06 -1.33 4.66 29.90 0.14 -1.19 16 25 H 0.27 14.88 8.31 -92.70 -0.77 14.11 16 26 H 0.02 0.81 7.20 -2.39 -0.02 0.80 16 27 H 0.01 0.62 7.57 -2.38 -0.02 0.61 16 28 H 0.41 12.84 7.72 -92.71 -0.72 12.12 16 29 H 0.13 2.42 7.50 -2.39 -0.02 2.40 16 30 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.16 1.93 8.06 -2.91 -0.02 1.90 16 32 H 0.17 1.61 8.06 -2.91 -0.02 1.59 16 33 H 0.15 2.54 8.06 -2.91 -0.02 2.51 16 34 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.08 2.13 7.71 -2.39 -0.02 2.11 16 Total: -1.00 -65.48 303.13 2.93 -62.55 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: 0.36 Total: 14.25 kcal Atomic # 6 Polarization: -8.29 SS G_CDS: 3.14 Total: -5.15 kcal Atomic # 7 Polarization: -80.09 SS G_CDS: -2.23 Total: -82.32 kcal Atomic # 8 Polarization: -30.85 SS G_CDS: -1.00 Total: -31.85 kcal Atomic # 9 Polarization: -3.00 SS G_CDS: 0.78 Total: -2.23 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 1.88 Total: 44.74 kcal Total: -65.48 2.93 -62.55 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320935251.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.737 kcal (2) G-P(sol) polarization free energy of solvation -65.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds