Wall clock time and date at job start Wed Apr 15 2020 11:43:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 120.00067 * 2 1 4 4 H 1.48499 * 109.47041 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.46896 * 299.99747 * 3 2 1 6 6 H 1.48504 * 109.47040 * 59.99904 * 3 2 1 7 7 C 1.37878 * 119.99703 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99591 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00446 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.47550 * 179.97438 * 9 7 2 11 11 C 1.34777 * 120.00199 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99750 * 359.97438 * 11 10 9 13 13 C 1.50702 * 119.99928 * 180.27479 * 11 10 9 14 14 H 1.09001 * 109.69099 * 59.16736 * 13 11 10 15 15 C 1.53408 * 109.69307 * 298.57510 * 13 11 10 16 16 O 1.42824 * 108.37147 * 175.58428 * 15 13 11 17 17 C 1.35852 * 117.84867 * 49.23480 * 16 15 13 18 18 C 1.39113 * 118.46878 * 162.96150 * 17 16 15 19 19 C 1.38181 * 120.19424 * 179.56586 * 18 17 16 20 20 F 1.35103 * 120.04577 * 179.97438 * 19 18 17 21 21 C 1.38521 * 119.90521 * 0.02562 * 19 18 17 22 22 C 1.38056 * 119.95654 * 0.07416 * 21 19 18 23 23 C 1.38392 * 121.80603 * 342.68639 * 17 16 15 24 24 C 1.50781 * 121.39634 * 0.55609 * 23 17 16 25 25 H 0.97000 * 119.99614 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.47333 * 59.99560 * 9 7 2 27 27 H 1.09002 * 109.47271 * 299.99993 * 9 7 2 28 28 H 0.97000 * 119.99484 * 359.97438 * 10 9 7 29 29 H 1.09001 * 109.68316 * 295.30149 * 15 13 11 30 30 H 1.08997 * 109.68445 * 55.86565 * 15 13 11 31 31 H 1.07998 * 119.89873 * 359.55708 * 18 17 16 32 32 H 1.08004 * 120.01836 * 180.10294 * 21 19 18 33 33 H 1.08005 * 119.82753 * 180.02562 * 22 21 19 34 34 H 1.08999 * 109.43314 * 222.10441 * 24 23 17 35 35 H 1.09000 * 109.43391 * 102.23685 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 1.7537 -4.8834 0.0000 12 8 0.5613 -5.1050 0.0000 13 6 2.7330 -6.0289 0.0063 14 1 3.3672 -5.9651 0.8905 15 6 3.6002 -5.9745 -1.2580 16 8 4.5834 -7.0071 -1.1742 17 6 4.1632 -8.2591 -0.8558 18 6 5.0127 -9.3297 -1.1153 19 6 4.6250 -10.6174 -0.7974 20 9 5.4522 -11.6550 -1.0512 21 6 3.3867 -10.8429 -0.2191 22 6 2.5419 -9.7815 0.0371 23 6 2.9256 -8.4889 -0.2806 24 6 1.9728 -7.3574 0.0113 25 1 -0.4849 0.8401 0.0004 26 1 0.6247 -2.5571 -0.8896 27 1 0.6240 -2.5568 0.8903 28 1 3.1566 -3.4354 0.0002 29 1 2.9765 -6.1319 -2.1380 30 1 4.0918 -5.0040 -1.3246 31 1 5.9779 -9.1539 -1.5667 32 1 3.0825 -11.8485 0.0316 33 1 1.5770 -9.9597 0.4884 34 1 1.5166 -7.5105 0.9893 35 1 1.1945 -7.3328 -0.7514 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001348294614.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:35 Heat of formation + Delta-G solvation = -109.210026 kcal Electronic energy + Delta-G solvation = -20770.991527 eV Core-core repulsion = 17262.032605 eV Total energy + Delta-G solvation = -3508.958922 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.106 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -49.11917 -41.03581 -38.93793 -37.47728 -34.48530 -34.05686 -32.45074 -30.71717 -30.56611 -27.38656 -25.77587 -24.52882 -23.17630 -22.50330 -20.77116 -19.52824 -18.51061 -17.73113 -16.99205 -16.35705 -16.03499 -15.82777 -15.40810 -15.18835 -15.16488 -14.75480 -14.56367 -14.15716 -13.82127 -13.59317 -13.24439 -13.06958 -12.92265 -12.09225 -11.89425 -11.82569 -11.66716 -11.32706 -11.04192 -10.99813 -10.93527 -10.73724 -10.37986 -9.46202 -9.23840 -8.98074 -8.82467 -8.41402 -8.03100 -6.23675 -4.31095 0.87940 1.03609 2.89249 3.11165 3.19389 3.26822 3.29494 3.33176 3.83027 4.13813 4.28679 4.44059 4.49041 4.58821 4.75291 4.77787 4.99701 5.04258 5.12966 5.18897 5.35975 5.41704 5.54899 5.71596 5.82013 5.87003 5.94511 6.02039 6.20189 6.47789 7.13139 7.19505 7.27103 7.41210 7.56752 7.88308 8.46676 8.66903 8.92511 9.35810 10.86476 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.044599 B = 0.003148 C = 0.002970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.661550 B = 8892.551947 C = 9425.629431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.904 3.096 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.545 4.545 8 H 0.064 0.936 9 C 0.248 3.752 10 N -0.709 5.709 11 C 0.507 3.493 12 O -0.548 6.548 13 C -0.149 4.149 14 H 0.108 0.892 15 C 0.072 3.928 16 O -0.307 6.307 17 C 0.160 3.840 18 C -0.186 4.186 19 C 0.125 3.875 20 F -0.138 7.138 21 C -0.185 4.185 22 C -0.054 4.054 23 C -0.161 4.161 24 C -0.059 4.059 25 H 0.266 0.734 26 H 0.028 0.972 27 H 0.028 0.972 28 H 0.391 0.609 29 H 0.075 0.925 30 H 0.119 0.881 31 H 0.142 0.858 32 H 0.136 0.864 33 H 0.137 0.863 34 H 0.090 0.910 35 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.793 -18.201 -1.109 20.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.583 4.583 8 H 0.082 0.918 9 C 0.128 3.872 10 N -0.357 5.357 11 C 0.290 3.710 12 O -0.427 6.427 13 C -0.171 4.171 14 H 0.126 0.874 15 C -0.003 4.003 16 O -0.220 6.220 17 C 0.114 3.886 18 C -0.206 4.206 19 C 0.106 3.894 20 F -0.116 7.116 21 C -0.204 4.204 22 C -0.072 4.072 23 C -0.163 4.163 24 C -0.096 4.096 25 H 0.076 0.924 26 H 0.046 0.954 27 H 0.046 0.954 28 H 0.224 0.776 29 H 0.094 0.906 30 H 0.137 0.863 31 H 0.160 0.840 32 H 0.154 0.846 33 H 0.155 0.845 34 H 0.109 0.891 35 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 7.979 -18.150 -1.162 19.860 hybrid contribution 0.827 0.915 0.060 1.235 sum 8.806 -17.235 -1.102 19.386 Atomic orbital electron populations 1.69980 1.06131 1.27310 1.48775 1.24955 0.94921 0.99522 0.94589 0.86353 0.79847 0.82874 0.77806 1.19581 1.20759 1.20760 1.21246 0.93320 0.90368 1.53401 0.91778 1.19158 0.88265 0.81886 0.97900 1.46526 1.11293 1.06075 1.71774 1.19982 0.88972 0.84047 0.77997 1.90679 1.16532 1.84702 1.50758 1.22047 0.98481 0.95763 1.00816 0.87356 1.23053 0.90243 0.90166 0.96840 1.86025 1.36402 1.14972 1.84622 1.18334 0.92118 0.84570 0.93589 1.20394 1.02672 0.89466 1.08043 1.17229 0.89016 0.83469 0.99680 1.91505 1.71349 1.56686 1.92073 1.20997 0.93755 1.00755 1.04938 1.20770 0.99223 0.90453 0.96795 1.20037 0.95812 0.96344 1.04060 1.20314 0.96035 0.88762 1.04505 0.92424 0.95358 0.95384 0.77581 0.90644 0.86304 0.83973 0.84605 0.84469 0.89114 0.88788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.43 13.29 55.43 0.74 -24.69 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.90 20.34 29.54 -169.99 -5.02 15.32 16 4 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 5 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 6 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.55 -14.24 9.28 -34.44 -0.32 -14.56 16 8 H 0.06 1.56 7.60 -52.48 -0.40 1.17 16 9 C 0.25 6.27 5.43 -5.20 -0.03 6.24 16 10 N -0.71 -13.76 5.44 -61.47 -0.33 -14.10 16 11 C 0.51 9.19 7.15 -10.98 -0.08 9.11 16 12 O -0.55 -12.15 15.79 5.55 0.09 -12.06 16 13 C -0.15 -1.97 2.76 -91.53 -0.25 -2.23 16 14 H 0.11 1.31 8.14 -51.93 -0.42 0.89 16 15 C 0.07 0.85 6.26 37.37 0.23 1.09 16 16 O -0.31 -3.78 10.27 -19.27 -0.20 -3.98 16 17 C 0.16 1.92 6.47 -39.20 -0.25 1.67 16 18 C -0.19 -2.07 9.91 -39.28 -0.39 -2.46 16 19 C 0.13 1.34 7.30 -39.50 -0.29 1.06 16 20 F -0.14 -1.51 17.27 2.25 0.04 -1.47 16 21 C -0.19 -1.76 10.03 -39.54 -0.40 -2.16 16 22 C -0.05 -0.53 9.66 -39.54 -0.38 -0.91 16 23 C -0.16 -1.85 5.75 -104.42 -0.60 -2.45 16 24 C -0.06 -0.73 4.67 -27.81 -0.13 -0.86 16 25 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 26 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.39 6.42 7.80 -40.82 -0.32 6.10 16 29 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.12 1.25 7.58 -51.93 -0.39 0.85 16 31 H 0.14 1.41 8.06 -52.49 -0.42 0.99 16 32 H 0.14 1.00 8.06 -52.48 -0.42 0.58 16 33 H 0.14 1.04 8.06 -52.48 -0.42 0.62 16 34 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.09 1.26 7.69 -51.93 -0.40 0.86 16 LS Contribution 306.88 15.07 4.62 4.62 Total: -1.00 -30.71 306.88 -7.07 -37.78 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -4.03 Total: 3.41 kcal Atomic # 6 Polarization: -1.85 SS G_CDS: -2.98 Total: -4.83 kcal Atomic # 7 Polarization: -39.19 SS G_CDS: 0.40 Total: -38.79 kcal Atomic # 8 Polarization: -15.93 SS G_CDS: -0.11 Total: -16.04 kcal Atomic # 9 Polarization: -1.51 SS G_CDS: 0.04 Total: -1.47 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -30.71 -7.07 -37.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348294614.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.428 kcal (2) G-P(sol) polarization free energy of solvation -30.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds