Wall clock time and date at job start Wed Apr 15 2020 11:43:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 120.00067 * 2 1 4 4 H 1.48499 * 109.47041 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.46896 * 299.99747 * 3 2 1 6 6 H 1.48504 * 109.47040 * 59.99904 * 3 2 1 7 7 C 1.37878 * 119.99703 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99591 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00446 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.47550 * 179.97438 * 9 7 2 11 11 C 1.34777 * 120.00199 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99750 * 359.97438 * 11 10 9 13 13 C 1.50702 * 119.99928 * 180.27479 * 11 10 9 14 14 H 1.09001 * 109.69099 * 59.16736 * 13 11 10 15 15 C 1.53408 * 109.69307 * 298.57510 * 13 11 10 16 16 O 1.42824 * 108.37147 * 175.58428 * 15 13 11 17 17 C 1.35852 * 117.84867 * 49.23480 * 16 15 13 18 18 C 1.39113 * 118.46878 * 162.96150 * 17 16 15 19 19 C 1.38181 * 120.19424 * 179.56586 * 18 17 16 20 20 F 1.35103 * 120.04577 * 179.97438 * 19 18 17 21 21 C 1.38521 * 119.90521 * 0.02562 * 19 18 17 22 22 C 1.38056 * 119.95654 * 0.07416 * 21 19 18 23 23 C 1.38392 * 121.80603 * 342.68639 * 17 16 15 24 24 C 1.50781 * 121.39634 * 0.55609 * 23 17 16 25 25 H 0.97000 * 119.99614 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.47333 * 59.99560 * 9 7 2 27 27 H 1.09002 * 109.47271 * 299.99993 * 9 7 2 28 28 H 0.97000 * 119.99484 * 359.97438 * 10 9 7 29 29 H 1.09001 * 109.68316 * 295.30149 * 15 13 11 30 30 H 1.08997 * 109.68445 * 55.86565 * 15 13 11 31 31 H 1.07998 * 119.89873 * 359.55708 * 18 17 16 32 32 H 1.08004 * 120.01836 * 180.10294 * 21 19 18 33 33 H 1.08005 * 119.82753 * 180.02562 * 22 21 19 34 34 H 1.08999 * 109.43314 * 222.10441 * 24 23 17 35 35 H 1.09000 * 109.43391 * 102.23685 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 1.7537 -4.8834 0.0000 12 8 0.5613 -5.1050 0.0000 13 6 2.7330 -6.0289 0.0063 14 1 3.3672 -5.9651 0.8905 15 6 3.6002 -5.9745 -1.2580 16 8 4.5834 -7.0071 -1.1742 17 6 4.1632 -8.2591 -0.8558 18 6 5.0127 -9.3297 -1.1153 19 6 4.6250 -10.6174 -0.7974 20 9 5.4522 -11.6550 -1.0512 21 6 3.3867 -10.8429 -0.2191 22 6 2.5419 -9.7815 0.0371 23 6 2.9256 -8.4889 -0.2806 24 6 1.9728 -7.3574 0.0113 25 1 -0.4849 0.8401 0.0004 26 1 0.6247 -2.5571 -0.8896 27 1 0.6240 -2.5568 0.8903 28 1 3.1566 -3.4354 0.0002 29 1 2.9765 -6.1319 -2.1380 30 1 4.0918 -5.0040 -1.3246 31 1 5.9779 -9.1539 -1.5667 32 1 3.0825 -11.8485 0.0316 33 1 1.5770 -9.9597 0.4884 34 1 1.5166 -7.5105 0.9893 35 1 1.1945 -7.3328 -0.7514 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001348294614.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:35 Heat of formation + Delta-G solvation = -129.010064 kcal Electronic energy + Delta-G solvation = -20771.850121 eV Core-core repulsion = 17262.032605 eV Total energy + Delta-G solvation = -3509.817516 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.106 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.94944 -42.03060 -40.38751 -38.36390 -36.24862 -35.22746 -34.36206 -31.66246 -31.48465 -29.25048 -26.72290 -25.84242 -24.36126 -23.85397 -22.01534 -20.88376 -19.38890 -19.16339 -18.09937 -17.78808 -17.11205 -17.01393 -16.73161 -16.40434 -16.11720 -16.05966 -15.95356 -15.36518 -15.03958 -14.60472 -14.46235 -14.21090 -14.02326 -13.96548 -13.71608 -12.94142 -12.76302 -12.72922 -12.54417 -12.30194 -12.22256 -11.92226 -11.70716 -11.44906 -10.82489 -10.82183 -9.88852 -9.80298 -9.27792 -8.29530 -6.45484 0.04290 0.22543 1.44526 1.44567 1.58109 1.60369 2.00029 2.28439 2.46177 2.54349 3.06124 3.31835 3.40897 3.52116 3.64103 3.76536 3.93819 4.01975 4.12612 4.29901 4.40495 4.44827 4.52089 4.85336 4.91822 5.01921 5.02631 5.11667 5.16141 5.24386 5.36341 5.46183 5.65029 5.67184 5.84343 6.24086 6.65159 6.82561 7.22671 7.40592 8.82659 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.044599 B = 0.003148 C = 0.002970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.661550 B = 8892.551947 C = 9425.629431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.005 3.995 3 Si 0.982 3.018 4 H -0.253 1.253 5 H -0.280 1.280 6 H -0.281 1.281 7 C -0.555 4.555 8 H 0.085 0.915 9 C 0.265 3.735 10 N -0.703 5.703 11 C 0.509 3.491 12 O -0.590 6.590 13 C -0.134 4.134 14 H 0.128 0.872 15 C 0.075 3.925 16 O -0.310 6.310 17 C 0.142 3.858 18 C -0.191 4.191 19 C 0.118 3.882 20 F -0.140 7.140 21 C -0.178 4.178 22 C -0.052 4.052 23 C -0.168 4.168 24 C -0.056 4.056 25 H 0.268 0.732 26 H -0.008 1.008 27 H -0.010 1.010 28 H 0.409 0.591 29 H 0.073 0.927 30 H 0.135 0.865 31 H 0.150 0.850 32 H 0.161 0.839 33 H 0.160 0.840 34 H 0.094 0.906 35 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.809 -18.861 -0.907 21.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.195 4.195 3 Si 0.805 3.195 4 H -0.176 1.176 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.592 4.592 8 H 0.103 0.897 9 C 0.142 3.858 10 N -0.352 5.352 11 C 0.295 3.705 12 O -0.472 6.472 13 C -0.156 4.156 14 H 0.146 0.854 15 C 0.000 4.000 16 O -0.223 6.223 17 C 0.096 3.904 18 C -0.211 4.211 19 C 0.099 3.901 20 F -0.119 7.119 21 C -0.196 4.196 22 C -0.070 4.070 23 C -0.169 4.169 24 C -0.093 4.093 25 H 0.077 0.923 26 H 0.010 0.990 27 H 0.008 0.992 28 H 0.245 0.755 29 H 0.091 0.909 30 H 0.152 0.848 31 H 0.168 0.832 32 H 0.178 0.822 33 H 0.177 0.823 34 H 0.112 0.888 35 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 10.048 -18.846 -0.962 21.378 hybrid contribution 0.161 0.996 -0.001 1.009 sum 10.209 -17.850 -0.963 20.586 Atomic orbital electron populations 1.70133 1.08211 1.28473 1.50080 1.26022 0.95733 1.03798 0.93943 0.85151 0.79186 0.77554 0.77587 1.17598 1.20578 1.20634 1.21652 0.94367 0.90543 1.52670 0.89714 1.18585 0.88654 0.84132 0.94408 1.46230 1.11353 1.05440 1.72222 1.20778 0.89223 0.84494 0.75974 1.90661 1.18932 1.85336 1.52242 1.21950 0.97444 0.93568 1.02595 0.85426 1.23059 0.90221 0.90986 0.95729 1.86027 1.36253 1.15139 1.84888 1.18491 0.92684 0.84629 0.94549 1.20512 1.02975 0.89532 1.08044 1.17392 0.89509 0.83288 0.99956 1.91501 1.71521 1.56701 1.92130 1.21279 0.92920 1.01887 1.03554 1.21030 1.00121 0.89689 0.96135 1.19998 0.95456 0.96649 1.04768 1.20250 0.95934 0.88782 1.04339 0.92279 0.99022 0.99225 0.75473 0.90856 0.84763 0.83250 0.82164 0.82269 0.88756 0.90163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.79 13.29 21.45 0.28 -54.50 16 2 C 0.00 0.26 5.46 84.65 0.46 0.72 16 3 Si 0.98 41.25 29.54 68.60 2.03 43.28 16 4 H -0.25 -9.77 7.11 99.48 0.71 -9.06 16 5 H -0.28 -11.62 7.11 99.48 0.71 -10.92 16 6 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 7 C -0.55 -28.97 9.28 25.60 0.24 -28.73 16 8 H 0.08 3.98 7.60 -2.91 -0.02 3.96 16 9 C 0.26 13.84 5.43 85.63 0.46 14.30 16 10 N -0.70 -27.36 5.44 -466.79 -2.54 -29.90 16 11 C 0.51 18.56 7.15 87.66 0.63 19.19 16 12 O -0.59 -27.00 15.79 -3.04 -0.05 -27.05 16 13 C -0.13 -3.39 2.76 -11.38 -0.03 -3.42 16 14 H 0.13 2.80 8.14 -2.39 -0.02 2.78 16 15 C 0.08 1.67 6.26 72.12 0.45 2.12 16 16 O -0.31 -7.10 10.27 -91.88 -0.94 -8.04 16 17 C 0.14 3.18 6.47 22.52 0.15 3.33 16 18 C -0.19 -3.94 9.91 22.47 0.22 -3.72 16 19 C 0.12 2.29 7.30 22.32 0.16 2.45 16 20 F -0.14 -2.81 17.27 44.97 0.78 -2.03 16 21 C -0.18 -2.89 10.03 22.29 0.22 -2.67 16 22 C -0.05 -0.88 9.66 22.30 0.22 -0.67 16 23 C -0.17 -3.56 5.75 -19.73 -0.11 -3.67 16 24 C -0.06 -1.33 4.67 29.90 0.14 -1.19 16 25 H 0.27 14.76 8.31 -92.71 -0.77 13.99 16 26 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 27 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 28 H 0.41 12.90 7.80 -92.71 -0.72 12.18 16 29 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.13 2.54 7.58 -2.39 -0.02 2.52 16 31 H 0.15 2.75 8.06 -2.91 -0.02 2.73 16 32 H 0.16 1.79 8.06 -2.91 -0.02 1.77 16 33 H 0.16 1.96 8.06 -2.91 -0.02 1.94 16 34 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 35 H 0.08 2.15 7.69 -2.39 -0.02 2.13 16 Total: -1.00 -67.67 306.88 3.17 -64.50 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: 0.40 Total: 15.71 kcal Atomic # 6 Polarization: -5.17 SS G_CDS: 3.21 Total: -1.96 kcal Atomic # 7 Polarization: -82.15 SS G_CDS: -2.25 Total: -84.40 kcal Atomic # 8 Polarization: -34.10 SS G_CDS: -0.99 Total: -35.09 kcal Atomic # 9 Polarization: -2.81 SS G_CDS: 0.78 Total: -2.03 kcal Atomic # 14 Polarization: 41.25 SS G_CDS: 2.03 Total: 43.28 kcal Total: -67.67 3.17 -64.50 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348294614.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.509 kcal (2) G-P(sol) polarization free energy of solvation -67.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds