Wall clock time and date at job start Wed Apr 15 2020 11:43:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99552 * 2 1 4 4 H 1.48497 * 109.47467 * 269.99806 * 3 2 1 5 5 H 1.48496 * 109.47203 * 30.00071 * 3 2 1 6 6 H 1.48506 * 109.46767 * 150.00040 * 3 2 1 7 7 C 1.37870 * 120.00294 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00096 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00036 * 179.97438 * 7 2 1 10 10 N 1.46506 * 109.47133 * 180.02562 * 9 7 2 11 11 C 1.34777 * 120.00118 * 180.02562 * 10 9 7 12 12 O 1.21288 * 119.99888 * 359.97438 * 11 10 9 13 13 C 1.50696 * 120.00271 * 179.97438 * 11 10 9 14 14 H 1.09008 * 109.72129 * 299.42608 * 13 11 10 15 15 C 1.53407 * 109.69572 * 59.99702 * 13 11 10 16 16 O 1.42828 * 108.36592 * 184.41496 * 15 13 11 17 17 C 1.35844 * 117.84401 * 310.72200 * 16 15 13 18 18 C 1.39106 * 118.46894 * 197.30834 * 17 16 15 19 19 C 1.38185 * 120.19537 * 180.22779 * 18 17 16 20 20 F 1.35100 * 120.05093 * 180.32021 * 19 18 17 21 21 C 1.38525 * 119.90087 * 0.04961 * 19 18 17 22 22 C 1.38062 * 119.96028 * 359.90636 * 21 19 18 23 23 C 1.38392 * 121.80306 * 17.40905 * 17 16 15 24 24 C 1.50771 * 121.39613 * 359.34912 * 23 17 16 25 25 H 0.97000 * 120.00537 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.46772 * 60.00499 * 9 7 2 27 27 H 1.08994 * 109.47458 * 300.00119 * 9 7 2 28 28 H 0.97002 * 119.99666 * 359.97438 * 10 9 7 29 29 H 1.09001 * 109.68569 * 64.69464 * 15 13 11 30 30 H 1.09002 * 109.71331 * 304.15237 * 15 13 11 31 31 H 1.08002 * 119.90598 * 0.27899 * 18 17 16 32 32 H 1.08004 * 120.01785 * 179.97438 * 21 19 18 33 33 H 1.07998 * 119.82448 * 179.97438 * 22 21 19 34 34 H 1.08997 * 109.43623 * 137.93113 * 24 23 17 35 35 H 1.08998 * 109.43936 * 257.80364 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0000 10 7 4.0000 -2.5751 0.0001 11 6 5.3251 -2.8214 0.0001 12 8 6.1132 -1.8995 -0.0004 13 6 5.8275 -4.2421 0.0008 14 1 5.4749 -4.7565 0.8949 15 6 5.3189 -4.9710 -1.2495 16 8 5.7235 -6.3384 -1.1691 17 6 7.0248 -6.5991 -0.8793 18 6 7.5229 -7.8694 -1.1501 19 6 8.8401 -8.1747 -0.8651 20 9 9.3225 -9.4074 -1.1353 21 6 9.6667 -7.2133 -0.3072 22 6 9.1738 -5.9519 -0.0388 23 6 7.8548 -5.6402 -0.3254 24 6 7.3578 -4.2482 -0.0280 25 1 -0.4851 0.8400 -0.0004 26 1 3.8752 -0.6795 0.8895 27 1 3.8746 -0.6807 -0.8904 28 1 3.3696 -3.3124 0.0009 29 1 5.7473 -4.5131 -2.1412 30 1 4.2313 -4.9118 -1.2928 31 1 6.8785 -8.6190 -1.5851 32 1 10.6964 -7.4500 -0.0833 33 1 9.8201 -5.2041 0.3965 34 1 7.7400 -3.9258 0.9406 35 1 7.7086 -3.5648 -0.8013 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001348294628.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:50 Heat of formation + Delta-G solvation = -105.183127 kcal Electronic energy + Delta-G solvation = -20823.112834 eV Core-core repulsion = 17314.328532 eV Total energy + Delta-G solvation = -3508.784302 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.106 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.14391 -41.09066 -39.08336 -37.51954 -34.60624 -34.15225 -32.47321 -30.77420 -30.65016 -28.00020 -25.82742 -24.57027 -23.18766 -22.18351 -20.81475 -19.68327 -18.54805 -17.81612 -17.09762 -16.51697 -16.13906 -15.87014 -15.59979 -15.22839 -15.21209 -14.80321 -14.63610 -14.04525 -13.90397 -13.70602 -13.30743 -13.12374 -13.03621 -12.46060 -12.20151 -11.89356 -11.73724 -11.38934 -11.11856 -11.02462 -10.86571 -10.76253 -10.04397 -9.58448 -9.40892 -9.01720 -8.85961 -8.45065 -8.31664 -6.28126 -4.31431 0.84589 1.00363 2.83958 2.97715 3.21266 3.28193 3.29813 3.35578 3.70354 4.10725 4.26799 4.37301 4.44002 4.52675 4.68836 4.74625 4.93112 4.99376 5.07019 5.14604 5.30632 5.35942 5.46141 5.67740 5.77255 5.81923 5.90671 5.95503 6.15650 6.44482 6.68777 6.96125 7.04537 7.10597 7.28260 8.00069 8.37452 8.63265 8.75451 9.31058 10.83683 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.047019 B = 0.003271 C = 0.003092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.357333 B = 8557.600882 C = 9054.077140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.079 3.921 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.261 1.261 7 C -0.547 4.547 8 H 0.080 0.920 9 C 0.219 3.781 10 N -0.702 5.702 11 C 0.509 3.491 12 O -0.550 6.550 13 C -0.149 4.149 14 H 0.111 0.889 15 C 0.072 3.928 16 O -0.306 6.306 17 C 0.160 3.840 18 C -0.186 4.186 19 C 0.126 3.874 20 F -0.137 7.137 21 C -0.185 4.185 22 C -0.054 4.054 23 C -0.162 4.162 24 C -0.059 4.059 25 H 0.268 0.732 26 H 0.027 0.973 27 H 0.022 0.978 28 H 0.397 0.603 29 H 0.075 0.925 30 H 0.120 0.880 31 H 0.143 0.857 32 H 0.136 0.864 33 H 0.137 0.863 34 H 0.091 0.909 35 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.191 -14.295 -1.203 21.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.126 4.126 3 Si 0.703 3.297 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.185 1.185 7 C -0.585 4.585 8 H 0.098 0.902 9 C 0.098 3.902 10 N -0.350 5.350 11 C 0.293 3.707 12 O -0.429 6.429 13 C -0.170 4.170 14 H 0.129 0.871 15 C -0.004 4.004 16 O -0.219 6.219 17 C 0.114 3.886 18 C -0.205 4.205 19 C 0.107 3.893 20 F -0.116 7.116 21 C -0.204 4.204 22 C -0.072 4.072 23 C -0.163 4.163 24 C -0.096 4.096 25 H 0.078 0.922 26 H 0.045 0.955 27 H 0.040 0.960 28 H 0.231 0.769 29 H 0.094 0.906 30 H 0.138 0.862 31 H 0.161 0.839 32 H 0.154 0.846 33 H 0.155 0.845 34 H 0.109 0.891 35 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 16.401 -13.656 -1.251 21.378 hybrid contribution 0.076 0.490 0.037 0.497 sum 16.476 -13.166 -1.214 21.125 Atomic orbital electron populations 1.69873 1.06227 1.27535 1.49105 1.24794 0.94790 0.99190 0.93786 0.86820 0.80552 0.83249 0.79076 1.19810 1.20841 1.18524 1.21067 0.88401 0.95293 1.53691 0.90179 1.19542 0.95398 0.78362 0.96944 1.46249 1.05518 1.11357 1.71872 1.20035 0.83354 0.89695 0.77641 1.90672 1.55501 1.45856 1.50879 1.22032 0.97874 0.95962 1.01174 0.87115 1.23064 1.01679 0.78776 0.96844 1.86036 1.22418 1.28166 1.85276 1.18333 0.83767 0.92813 0.93686 1.20405 0.94774 0.97288 1.08060 1.17234 0.91999 0.80468 0.99616 1.91507 1.88226 1.40154 1.91682 1.21001 1.00784 0.93581 1.05078 1.20761 0.94013 0.95698 0.96760 1.20012 0.95021 0.96873 1.04444 1.20306 0.92724 0.92071 1.04470 0.92165 0.95546 0.95978 0.76863 0.90629 0.86176 0.83918 0.84591 0.84492 0.89091 0.88851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.85 13.96 55.43 0.77 -25.08 16 2 C 0.08 2.16 5.47 -17.82 -0.10 2.06 16 3 Si 0.88 20.82 27.47 -169.99 -4.67 16.15 16 4 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.26 -6.14 6.54 56.52 0.37 -5.77 16 7 C -0.55 -14.43 9.83 -34.44 -0.34 -14.77 16 8 H 0.08 2.20 7.84 -52.49 -0.41 1.78 16 9 C 0.22 5.12 4.50 -5.19 -0.02 5.09 16 10 N -0.70 -13.02 5.43 -61.47 -0.33 -13.36 16 11 C 0.51 8.72 7.16 -10.99 -0.08 8.64 16 12 O -0.55 -11.41 15.80 5.55 0.09 -11.32 16 13 C -0.15 -1.87 2.76 -91.53 -0.25 -2.12 16 14 H 0.11 1.27 8.14 -51.92 -0.42 0.85 16 15 C 0.07 0.82 6.25 37.37 0.23 1.05 16 16 O -0.31 -3.68 10.27 -19.25 -0.20 -3.88 16 17 C 0.16 1.87 6.47 -39.20 -0.25 1.62 16 18 C -0.19 -2.02 9.91 -39.28 -0.39 -2.41 16 19 C 0.13 1.32 7.30 -39.49 -0.29 1.03 16 20 F -0.14 -1.48 17.27 2.25 0.04 -1.44 16 21 C -0.19 -1.71 10.03 -39.54 -0.40 -2.10 16 22 C -0.05 -0.51 9.66 -39.54 -0.38 -0.89 16 23 C -0.16 -1.79 5.75 -104.42 -0.60 -2.39 16 24 C -0.06 -0.69 4.66 -27.82 -0.13 -0.82 16 25 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 26 H 0.03 0.66 7.20 -51.93 -0.37 0.28 16 27 H 0.02 0.54 7.57 -51.93 -0.39 0.14 16 28 H 0.40 6.41 7.72 -40.82 -0.32 6.09 16 29 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.12 1.23 7.50 -51.93 -0.39 0.84 16 31 H 0.14 1.39 8.06 -52.49 -0.42 0.97 16 32 H 0.14 0.96 8.06 -52.48 -0.42 0.54 16 33 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 34 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 35 H 0.09 1.18 7.71 -51.93 -0.40 0.78 16 LS Contribution 303.13 15.07 4.57 4.57 Total: -1.00 -30.79 303.13 -6.72 -37.50 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -3.99 Total: 2.86 kcal Atomic # 6 Polarization: -3.01 SS G_CDS: -3.00 Total: -6.01 kcal Atomic # 7 Polarization: -38.88 SS G_CDS: 0.44 Total: -38.44 kcal Atomic # 8 Polarization: -15.09 SS G_CDS: -0.11 Total: -15.20 kcal Atomic # 9 Polarization: -1.48 SS G_CDS: 0.04 Total: -1.44 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -4.67 Total: 16.15 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -30.79 -6.72 -37.50 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348294628.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.681 kcal (2) G-P(sol) polarization free energy of solvation -30.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds