Wall clock time and date at job start Wed Apr 15 2020 11:43:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99552 * 2 1 4 4 H 1.48497 * 109.47467 * 269.99806 * 3 2 1 5 5 H 1.48496 * 109.47203 * 30.00071 * 3 2 1 6 6 H 1.48506 * 109.46767 * 150.00040 * 3 2 1 7 7 C 1.37870 * 120.00294 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00096 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00036 * 179.97438 * 7 2 1 10 10 N 1.46506 * 109.47133 * 180.02562 * 9 7 2 11 11 C 1.34777 * 120.00118 * 180.02562 * 10 9 7 12 12 O 1.21288 * 119.99888 * 359.97438 * 11 10 9 13 13 C 1.50696 * 120.00271 * 179.97438 * 11 10 9 14 14 H 1.09008 * 109.72129 * 299.42608 * 13 11 10 15 15 C 1.53407 * 109.69572 * 59.99702 * 13 11 10 16 16 O 1.42828 * 108.36592 * 184.41496 * 15 13 11 17 17 C 1.35844 * 117.84401 * 310.72200 * 16 15 13 18 18 C 1.39106 * 118.46894 * 197.30834 * 17 16 15 19 19 C 1.38185 * 120.19537 * 180.22779 * 18 17 16 20 20 F 1.35100 * 120.05093 * 180.32021 * 19 18 17 21 21 C 1.38525 * 119.90087 * 0.04961 * 19 18 17 22 22 C 1.38062 * 119.96028 * 359.90636 * 21 19 18 23 23 C 1.38392 * 121.80306 * 17.40905 * 17 16 15 24 24 C 1.50771 * 121.39613 * 359.34912 * 23 17 16 25 25 H 0.97000 * 120.00537 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.46772 * 60.00499 * 9 7 2 27 27 H 1.08994 * 109.47458 * 300.00119 * 9 7 2 28 28 H 0.97002 * 119.99666 * 359.97438 * 10 9 7 29 29 H 1.09001 * 109.68569 * 64.69464 * 15 13 11 30 30 H 1.09002 * 109.71331 * 304.15237 * 15 13 11 31 31 H 1.08002 * 119.90598 * 0.27899 * 18 17 16 32 32 H 1.08004 * 120.01785 * 179.97438 * 21 19 18 33 33 H 1.07998 * 119.82448 * 179.97438 * 22 21 19 34 34 H 1.08997 * 109.43623 * 137.93113 * 24 23 17 35 35 H 1.08998 * 109.43936 * 257.80364 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0000 10 7 4.0000 -2.5751 0.0001 11 6 5.3251 -2.8214 0.0001 12 8 6.1132 -1.8995 -0.0004 13 6 5.8275 -4.2421 0.0008 14 1 5.4749 -4.7565 0.8949 15 6 5.3189 -4.9710 -1.2495 16 8 5.7235 -6.3384 -1.1691 17 6 7.0248 -6.5991 -0.8793 18 6 7.5229 -7.8694 -1.1501 19 6 8.8401 -8.1747 -0.8651 20 9 9.3225 -9.4074 -1.1353 21 6 9.6667 -7.2133 -0.3072 22 6 9.1738 -5.9519 -0.0388 23 6 7.8548 -5.6402 -0.3254 24 6 7.3578 -4.2482 -0.0280 25 1 -0.4851 0.8400 -0.0004 26 1 3.8752 -0.6795 0.8895 27 1 3.8746 -0.6807 -0.8904 28 1 3.3696 -3.3124 0.0009 29 1 5.7473 -4.5131 -2.1412 30 1 4.2313 -4.9118 -1.2928 31 1 6.8785 -8.6190 -1.5851 32 1 10.6964 -7.4500 -0.0833 33 1 9.8201 -5.2041 0.3965 34 1 7.7400 -3.9258 0.9406 35 1 7.7086 -3.5648 -0.8013 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001348294628.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:42 Heat of formation + Delta-G solvation = -125.169934 kcal Electronic energy + Delta-G solvation = -20823.979527 eV Core-core repulsion = 17314.328532 eV Total energy + Delta-G solvation = -3509.650995 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.106 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.95272 -42.04074 -40.42947 -38.36655 -36.27458 -35.23548 -34.42104 -31.74499 -31.49350 -29.76880 -26.72226 -25.74540 -24.12898 -23.72278 -22.04694 -20.93182 -19.39707 -19.29032 -18.28504 -17.84305 -17.11957 -17.05271 -16.74239 -16.41555 -16.14376 -16.00267 -15.96905 -15.37009 -15.09940 -14.73059 -14.54544 -14.29358 -14.19020 -14.02437 -13.79367 -13.10808 -12.72975 -12.71551 -12.54436 -12.29812 -11.94670 -11.91765 -11.70523 -11.64507 -10.92070 -10.87970 -9.99201 -9.80837 -9.27727 -8.39560 -6.46945 0.04348 0.22514 1.33512 1.36413 1.47650 1.56351 1.99830 2.27806 2.32806 2.52223 2.96123 3.31867 3.40226 3.51319 3.62402 3.76510 3.93157 4.01614 4.12236 4.29312 4.40357 4.44625 4.51358 4.79334 4.85730 4.92098 5.01942 5.02791 5.03179 5.16292 5.25693 5.35959 5.45703 5.67267 6.06654 6.24664 6.54260 6.76199 7.13931 7.31612 8.75095 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.047019 B = 0.003271 C = 0.003092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.357333 B = 8557.600882 C = 9054.077140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.026 3.974 3 Si 0.937 3.063 4 H -0.265 1.265 5 H -0.276 1.276 6 H -0.258 1.258 7 C -0.547 4.547 8 H 0.060 0.940 9 C 0.230 3.770 10 N -0.702 5.702 11 C 0.514 3.486 12 O -0.584 6.584 13 C -0.136 4.136 14 H 0.127 0.873 15 C 0.074 3.926 16 O -0.312 6.312 17 C 0.141 3.859 18 C -0.193 4.193 19 C 0.117 3.883 20 F -0.141 7.141 21 C -0.178 4.178 22 C -0.051 4.051 23 C -0.168 4.168 24 C -0.055 4.055 25 H 0.272 0.728 26 H 0.015 0.985 27 H 0.016 0.984 28 H 0.409 0.591 29 H 0.076 0.924 30 H 0.131 0.869 31 H 0.148 0.852 32 H 0.161 0.839 33 H 0.162 0.838 34 H 0.097 0.903 35 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.066 -14.699 -0.992 23.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.175 4.175 3 Si 0.761 3.239 4 H -0.190 1.190 5 H -0.201 1.201 6 H -0.182 1.182 7 C -0.585 4.585 8 H 0.078 0.922 9 C 0.107 3.893 10 N -0.351 5.351 11 C 0.300 3.700 12 O -0.465 6.465 13 C -0.157 4.157 14 H 0.145 0.855 15 C -0.002 4.002 16 O -0.225 6.225 17 C 0.096 3.904 18 C -0.212 4.212 19 C 0.098 3.902 20 F -0.119 7.119 21 C -0.197 4.197 22 C -0.069 4.069 23 C -0.169 4.169 24 C -0.092 4.092 25 H 0.081 0.919 26 H 0.033 0.967 27 H 0.034 0.966 28 H 0.246 0.754 29 H 0.094 0.906 30 H 0.149 0.851 31 H 0.166 0.834 32 H 0.178 0.822 33 H 0.179 0.821 34 H 0.115 0.885 35 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 18.284 -14.100 -1.043 23.113 hybrid contribution -0.473 0.513 -0.027 0.698 sum 17.811 -13.587 -1.070 22.427 Atomic orbital electron populations 1.69982 1.07770 1.28616 1.50708 1.25606 0.95504 1.02721 0.93625 0.85862 0.79310 0.79308 0.79441 1.18990 1.20132 1.18197 1.21299 0.90021 0.94580 1.52591 0.92163 1.19141 0.93314 0.80888 0.95979 1.46077 1.06648 1.09941 1.72457 1.20680 0.82188 0.91259 0.75838 1.90655 1.56159 1.47558 1.52121 1.21952 0.98561 0.92620 1.02583 0.85530 1.23075 1.02323 0.78661 0.96111 1.86033 1.22877 1.28026 1.85575 1.18497 0.83805 0.93385 0.94715 1.20518 0.95252 0.97274 1.08191 1.17407 0.92122 0.80676 1.00005 1.91500 1.88212 1.40438 1.91766 1.21291 1.01725 0.92993 1.03670 1.21040 0.93543 0.96291 0.96000 1.20011 0.95782 0.96143 1.04925 1.20257 0.91873 0.92532 1.04520 0.91882 0.96714 0.96633 0.75444 0.90577 0.85115 0.83441 0.82172 0.82084 0.88504 0.89820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.64 13.96 21.44 0.30 -54.34 16 2 C 0.03 1.42 5.47 84.65 0.46 1.88 16 3 Si 0.94 42.72 27.47 68.60 1.88 44.60 16 4 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 5 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 6 H -0.26 -11.54 6.54 99.48 0.65 -10.89 16 7 C -0.55 -29.03 9.83 25.60 0.25 -28.78 16 8 H 0.06 3.36 7.84 -2.91 -0.02 3.34 16 9 C 0.23 10.65 4.50 85.63 0.39 11.03 16 10 N -0.70 -25.53 5.43 -466.77 -2.53 -28.06 16 11 C 0.51 17.04 7.16 87.66 0.63 17.67 16 12 O -0.58 -23.72 15.80 -3.06 -0.05 -23.76 16 13 C -0.14 -3.20 2.76 -11.38 -0.03 -3.23 16 14 H 0.13 2.64 8.14 -2.38 -0.02 2.62 16 15 C 0.07 1.57 6.25 72.12 0.45 2.02 16 16 O -0.31 -7.08 10.27 -91.80 -0.94 -8.02 16 17 C 0.14 3.09 6.47 22.52 0.15 3.24 16 18 C -0.19 -3.94 9.91 22.47 0.22 -3.72 16 19 C 0.12 2.23 7.30 22.33 0.16 2.40 16 20 F -0.14 -2.80 17.27 44.97 0.78 -2.03 16 21 C -0.18 -2.77 10.03 22.30 0.22 -2.55 16 22 C -0.05 -0.81 9.66 22.30 0.22 -0.59 16 23 C -0.17 -3.35 5.75 -19.74 -0.11 -3.46 16 24 C -0.05 -1.19 4.66 29.89 0.14 -1.05 16 25 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 26 H 0.01 0.73 7.20 -2.39 -0.02 0.71 16 27 H 0.02 0.75 7.57 -2.39 -0.02 0.73 16 28 H 0.41 12.88 7.72 -92.71 -0.72 12.16 16 29 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.13 2.48 7.50 -2.39 -0.02 2.46 16 31 H 0.15 2.74 8.06 -2.91 -0.02 2.72 16 32 H 0.16 1.69 8.06 -2.91 -0.02 1.66 16 33 H 0.16 1.74 8.06 -2.91 -0.02 1.72 16 34 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.08 2.00 7.71 -2.39 -0.02 1.98 16 Total: -1.00 -65.24 303.13 2.93 -62.31 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: 0.36 Total: 14.42 kcal Atomic # 6 Polarization: -8.27 SS G_CDS: 3.14 Total: -5.13 kcal Atomic # 7 Polarization: -80.16 SS G_CDS: -2.23 Total: -82.40 kcal Atomic # 8 Polarization: -30.80 SS G_CDS: -0.99 Total: -31.79 kcal Atomic # 9 Polarization: -2.80 SS G_CDS: 0.78 Total: -2.03 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 1.88 Total: 44.60 kcal Total: -65.24 2.93 -62.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348294628.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.860 kcal (2) G-P(sol) polarization free energy of solvation -65.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds