Wall clock time and date at job start Wed Apr 15 2020 11:43:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99867 * 2 1 4 4 H 1.48499 * 109.47135 * 269.99552 * 3 2 1 5 5 H 1.48503 * 109.47215 * 29.99742 * 3 2 1 6 6 H 1.48508 * 109.46958 * 149.99703 * 3 2 1 7 7 C 1.37873 * 119.99892 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00177 * 0.02562 * 7 2 1 9 9 C 1.50699 * 119.99861 * 180.02562 * 7 2 1 10 10 N 1.46906 * 109.47140 * 180.02562 * 9 7 2 11 11 C 1.47161 * 110.99894 * 292.95466 * 10 9 7 12 12 C 1.52886 * 108.49286 * 165.47537 * 11 10 9 13 13 C 1.50738 * 109.98019 * 50.38830 * 12 11 10 14 14 C 1.39139 * 118.41886 * 163.28753 * 13 12 11 15 15 F 1.35111 * 119.68936 * 359.58113 * 14 13 12 16 16 C 1.38451 * 120.62469 * 179.56750 * 14 13 12 17 17 C 1.37845 * 119.95753 * 0.02562 * 16 14 13 18 18 C 1.39486 * 119.72889 * 0.08663 * 17 16 14 19 19 C 1.47601 * 119.94016 * 179.97438 * 18 17 16 20 20 O 1.21489 * 120.00273 * 180.02562 * 19 18 17 21 21 O 1.34731 * 119.99866 * 0.02562 * 19 18 17 22 22 C 1.37409 * 121.66051 * 343.01294 * 13 12 11 23 23 C 1.46635 * 110.99795 * 169.99956 * 10 9 7 24 24 H 0.97002 * 119.99998 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.47103 * 60.00168 * 9 7 2 26 26 H 1.09000 * 109.47247 * 300.00046 * 9 7 2 27 27 H 1.08996 * 109.63636 * 285.17010 * 11 10 9 28 28 H 1.08998 * 109.63526 * 45.77311 * 11 10 9 29 29 H 1.09007 * 109.38305 * 290.23551 * 12 11 10 30 30 H 1.08996 * 109.30147 * 170.49518 * 12 11 10 31 31 H 1.07997 * 120.02446 * 180.02562 * 16 14 13 32 32 H 1.08004 * 120.13746 * 180.02562 * 17 16 14 33 33 H 0.96699 * 116.99724 * 180.02562 * 21 19 18 34 34 H 1.08997 * 109.26714 * 296.10397 * 23 10 9 35 35 H 1.08999 * 109.26553 * 55.60768 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0011 10 7 4.0012 -2.5791 0.0010 11 6 3.6713 -3.2551 1.2658 12 6 3.8689 -4.7594 1.0775 13 6 5.2263 -5.0299 0.4804 14 6 5.7377 -6.3216 0.5563 15 9 5.0190 -7.2912 1.1637 16 6 6.9759 -6.6229 0.0152 17 6 7.7140 -5.6379 -0.6055 18 6 7.2086 -4.3402 -0.6833 19 6 7.9951 -3.2818 -1.3463 20 8 7.5562 -2.1510 -1.4143 21 8 9.2000 -3.5697 -1.8762 22 6 5.9545 -4.0394 -0.1335 23 6 5.4475 -2.6250 -0.2362 24 1 -0.4850 0.8401 -0.0004 25 1 3.8745 -0.6800 0.8912 26 1 3.8752 -0.6804 -0.8888 27 1 4.3302 -2.8955 2.0561 28 1 2.6334 -3.0523 1.5297 29 1 3.0971 -5.1450 0.4111 30 1 3.7934 -5.2566 2.0445 31 1 7.3634 -7.6289 0.0793 32 1 8.6801 -5.8698 -1.0290 33 1 9.6780 -2.8437 -2.2998 34 1 5.6610 -2.2378 -1.2324 35 1 5.9534 -2.0073 0.5059 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601068070.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:59 Heat of formation + Delta-G solvation = -122.215160 kcal Electronic energy + Delta-G solvation = -21662.532899 eV Core-core repulsion = 18153.010032 eV Total energy + Delta-G solvation = -3509.522867 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.106 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -50.05368 -41.85564 -40.28934 -38.26717 -37.12695 -35.02353 -33.84114 -32.72997 -30.57978 -29.71951 -26.21247 -25.00494 -24.91329 -23.09106 -22.12623 -20.76493 -19.09335 -19.03256 -18.36497 -18.07869 -17.48922 -17.07589 -16.65758 -16.53284 -16.08090 -15.83972 -15.54404 -15.04299 -14.58560 -14.55068 -14.45627 -14.27016 -13.97217 -13.65177 -13.37380 -13.04775 -12.89401 -12.63778 -12.52992 -12.47424 -12.30271 -11.90255 -11.68689 -11.42499 -11.19238 -10.80202 -9.95183 -9.79816 -9.16219 -8.30678 -6.33980 -0.56401 0.09637 1.33285 1.33397 1.38417 1.44693 2.00268 2.32103 2.46507 2.99893 3.02271 3.06344 3.46096 3.56359 3.81866 3.97449 4.05352 4.25070 4.34261 4.41758 4.51070 4.62512 4.73299 4.78582 4.79082 4.88538 4.96798 4.98994 5.08429 5.14970 5.31246 5.47976 5.59906 5.67094 5.93769 6.24086 6.55150 6.71066 6.97414 7.29423 8.85517 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.018679 B = 0.005622 C = 0.004413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.614778 B = 4979.622243 C = 6343.297935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.014 3.986 3 Si 0.942 3.058 4 H -0.266 1.266 5 H -0.277 1.277 6 H -0.256 1.256 7 C -0.515 4.515 8 H 0.044 0.956 9 C 0.173 3.827 10 N -0.540 5.540 11 C 0.057 3.943 12 C -0.067 4.067 13 C -0.127 4.127 14 C 0.132 3.868 15 F -0.132 7.132 16 C -0.156 4.156 17 C -0.016 4.016 18 C -0.153 4.153 19 C 0.531 3.469 20 O -0.539 6.539 21 O -0.497 6.497 22 C 0.001 3.999 23 C 0.086 3.914 24 H 0.268 0.732 25 H -0.011 1.011 26 H 0.025 0.975 27 H 0.032 0.968 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.098 0.902 31 H 0.182 0.818 32 H 0.184 0.816 33 H 0.434 0.566 34 H 0.102 0.898 35 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.357 -13.387 -0.274 25.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.184 4.184 3 Si 0.766 3.234 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.180 1.180 7 C -0.554 4.554 8 H 0.062 0.938 9 C 0.046 3.954 10 N -0.264 5.264 11 C -0.071 4.071 12 C -0.104 4.104 13 C -0.129 4.129 14 C 0.112 3.888 15 F -0.110 7.110 16 C -0.175 4.175 17 C -0.034 4.034 18 C -0.155 4.155 19 C 0.377 3.623 20 O -0.432 6.432 21 O -0.311 6.311 22 C 0.000 4.000 23 C -0.041 4.041 24 H 0.077 0.923 25 H 0.007 0.993 26 H 0.043 0.957 27 H 0.051 0.949 28 H 0.090 0.910 29 H 0.097 0.903 30 H 0.117 0.883 31 H 0.199 0.801 32 H 0.202 0.798 33 H 0.297 0.703 34 H 0.120 0.880 35 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 20.628 -13.573 -0.477 24.698 hybrid contribution 0.052 1.875 0.451 1.929 sum 20.680 -11.699 -0.026 23.760 Atomic orbital electron populations 1.70028 1.07898 1.28142 1.52317 1.25748 0.95566 1.02806 0.94289 0.85793 0.79266 0.79093 0.79278 1.19108 1.20243 1.18046 1.21176 0.90518 0.93529 1.50148 0.93820 1.19916 0.94680 0.85832 0.94977 1.62295 1.12076 1.17741 1.34298 1.22057 1.01361 0.93791 0.89916 1.20445 0.92835 0.95708 1.01452 1.19600 0.98293 0.92198 1.02771 1.18088 0.91309 0.84275 0.95109 1.91513 1.77732 1.61288 1.80453 1.21422 0.92509 1.02989 1.00544 1.21532 1.00186 0.88785 0.92895 1.19058 0.94995 0.94743 1.06720 1.20740 0.79909 0.86639 0.75029 1.90910 1.70116 1.24568 1.57558 1.84465 1.30029 1.47385 1.69207 1.19517 0.92261 0.94987 0.93199 1.21319 0.87580 0.92297 1.02869 0.92299 0.99332 0.95731 0.94942 0.90964 0.90267 0.88345 0.80066 0.79839 0.70332 0.88027 0.94075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.55 13.96 21.45 0.30 -59.25 16 2 C 0.01 0.82 5.47 84.65 0.46 1.28 16 3 Si 0.94 45.42 27.47 68.60 1.88 47.30 16 4 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 5 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 6 H -0.26 -11.81 6.54 99.48 0.65 -11.16 16 7 C -0.52 -30.61 8.88 25.60 0.23 -30.38 16 8 H 0.04 2.85 7.55 -2.91 -0.02 2.83 16 9 C 0.17 8.83 3.77 85.56 0.32 9.16 16 10 N -0.54 -24.15 4.67 -905.79 -4.23 -28.38 16 11 C 0.06 2.27 5.42 86.22 0.47 2.73 16 12 C -0.07 -2.17 5.60 29.82 0.17 -2.00 16 13 C -0.13 -3.74 5.77 -19.83 -0.11 -3.86 16 14 C 0.13 3.04 7.24 22.54 0.16 3.20 16 15 F -0.13 -3.06 16.55 44.97 0.74 -2.32 16 16 C -0.16 -2.49 10.01 22.23 0.22 -2.27 16 17 C -0.02 -0.26 9.60 22.48 0.22 -0.04 16 18 C -0.15 -3.70 5.88 -20.03 -0.12 -3.82 16 19 C 0.53 12.55 8.22 70.29 0.58 13.13 16 20 O -0.54 -17.05 13.90 19.87 0.28 -16.78 16 21 O -0.50 -6.90 12.66 -56.41 -0.71 -7.61 16 22 C 0.00 0.04 5.82 -19.61 -0.11 -0.08 16 23 C 0.09 3.31 3.77 85.58 0.32 3.64 16 24 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 25 H -0.01 -0.56 7.17 -2.38 -0.02 -0.58 16 26 H 0.02 1.26 7.50 -2.39 -0.02 1.24 16 27 H 0.03 1.23 8.05 -2.39 -0.02 1.21 16 28 H 0.07 3.25 6.70 -2.39 -0.02 3.24 16 29 H 0.08 2.69 8.14 -2.38 -0.02 2.67 16 30 H 0.10 2.68 7.93 -2.39 -0.02 2.66 16 31 H 0.18 1.54 8.06 -2.91 -0.02 1.52 16 32 H 0.18 1.61 7.59 -2.91 -0.02 1.59 16 33 H 0.43 2.38 9.11 -74.06 -0.67 1.71 16 34 H 0.10 4.14 5.91 -2.39 -0.01 4.12 16 35 H 0.04 1.62 8.08 -2.39 -0.02 1.60 16 Total: -1.00 -74.05 295.51 1.47 -72.58 By element: Atomic # 1 Polarization: 3.34 SS G_CDS: 0.41 Total: 3.75 kcal Atomic # 6 Polarization: -12.11 SS G_CDS: 2.80 Total: -9.30 kcal Atomic # 7 Polarization: -83.69 SS G_CDS: -3.93 Total: -87.63 kcal Atomic # 8 Polarization: -23.95 SS G_CDS: -0.44 Total: -24.39 kcal Atomic # 9 Polarization: -3.06 SS G_CDS: 0.74 Total: -2.32 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 1.88 Total: 47.30 kcal Total: -74.05 1.47 -72.58 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601068070.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.634 kcal (2) G-P(sol) polarization free energy of solvation -74.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds