Wall clock time and date at job start Wed Apr 15 2020 11:44:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86799 * 120.00128 * 2 1 4 4 H 1.48499 * 109.47120 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47415 * 300.00145 * 3 2 1 6 6 H 1.48497 * 109.47085 * 60.00004 * 3 2 1 7 7 C 1.38954 * 119.99996 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00161 * 179.97438 * 7 2 1 9 9 N 1.37095 * 120.00022 * 359.97438 * 7 2 1 10 10 C 1.34775 * 120.00440 * 180.02562 * 9 7 2 11 11 O 1.21299 * 119.99563 * 359.97438 * 10 9 7 12 12 C 1.50700 * 120.00183 * 179.97438 * 10 9 7 13 13 S 1.81401 * 109.46696 * 179.97438 * 12 10 9 14 14 C 1.81408 * 102.99615 * 180.02562 * 13 12 10 15 15 C 1.52997 * 109.46973 * 180.02562 * 14 13 12 16 16 C 1.52995 * 109.47085 * 179.97438 * 15 14 13 17 17 C 1.50707 * 109.47301 * 179.97438 * 16 15 14 18 18 C 1.38238 * 119.99792 * 90.00016 * 17 16 15 19 19 C 1.38235 * 119.99712 * 179.97438 * 18 17 16 20 20 C 1.38234 * 120.00220 * 359.97124 * 19 18 17 21 21 C 1.38233 * 120.00037 * 0.28719 * 20 19 18 22 22 C 1.38234 * 120.00179 * 269.97953 * 17 16 15 23 23 H 0.97002 * 120.00105 * 359.97438 * 1 2 3 24 24 H 0.97006 * 119.99958 * 0.02562 * 9 7 2 25 25 H 1.09006 * 109.46916 * 60.00251 * 12 10 9 26 26 H 1.08994 * 109.47036 * 299.99568 * 12 10 9 27 27 H 1.08992 * 109.47499 * 60.00165 * 14 13 12 28 28 H 1.08999 * 109.46513 * 299.99835 * 14 13 12 29 29 H 1.08995 * 109.47671 * 59.99598 * 15 14 13 30 30 H 1.09004 * 109.46984 * 299.99614 * 15 14 13 31 31 H 1.09005 * 109.47610 * 59.99944 * 16 15 14 32 32 H 1.09000 * 109.47256 * 299.99285 * 16 15 14 33 33 H 1.08005 * 120.00068 * 359.97438 * 18 17 16 34 34 H 1.07999 * 119.99770 * 179.97438 * 19 18 17 35 35 H 1.08002 * 119.99744 * 180.02562 * 20 19 18 36 36 H 1.07998 * 120.00395 * 179.72811 * 21 20 19 37 37 H 1.07999 * 119.99968 * 359.97438 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3463 -0.0006 5 1 1.8894 2.3965 -1.2124 6 1 1.8894 2.3964 1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0010 9 7 1.3234 -2.3907 -0.0005 10 6 1.9972 -3.5579 -0.0005 11 8 3.2102 -3.5579 -0.0010 12 6 1.2436 -4.8630 0.0000 13 16 2.4225 -6.2417 -0.0009 14 6 1.3441 -7.7005 -0.0008 15 6 2.2009 -8.9680 -0.0009 16 6 1.2915 -10.1983 -0.0002 17 6 2.1354 -11.4469 -0.0010 18 6 2.5234 -12.0196 1.1959 19 6 3.2970 -13.1652 1.1952 20 6 3.6822 -13.7384 -0.0022 21 6 3.2987 -13.1628 -1.1991 22 6 2.5211 -12.0198 -1.1984 23 1 -0.4850 0.8401 0.0004 24 1 0.3533 -2.3906 -0.0005 25 1 0.6166 -4.9209 -0.8898 26 1 0.6174 -4.9205 0.8903 27 1 0.7146 -7.6870 -0.8905 28 1 0.7154 -7.6874 0.8895 29 1 2.8302 -8.9814 0.8889 30 1 2.8300 -8.9813 -0.8910 31 1 0.6618 -10.1853 -0.8899 32 1 0.6628 -10.1850 0.8901 33 1 2.2221 -11.5720 2.1315 34 1 3.6005 -13.6124 2.1303 35 1 4.2863 -14.6337 -0.0027 36 1 3.6033 -13.6081 -2.1346 37 1 2.2174 -11.5728 -2.1335 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126755005.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:07 Heat of formation + Delta-G solvation = -32.843455 kcal Electronic energy + Delta-G solvation = -17538.431612 eV Core-core repulsion = 14598.997370 eV Total energy + Delta-G solvation = -2939.434243 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.103 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.53953 -38.11324 -35.32021 -34.01046 -31.40390 -31.24109 -31.12198 -29.23823 -26.67214 -24.65270 -22.81069 -22.50235 -21.00371 -19.46653 -17.98568 -17.07342 -16.06394 -15.87256 -15.79063 -15.25411 -14.88385 -14.52263 -14.32525 -14.21727 -13.79173 -13.63645 -13.49385 -12.76377 -12.59900 -12.56382 -12.04234 -11.90846 -11.70677 -11.42412 -11.32468 -11.10137 -10.94373 -10.83909 -10.36475 -10.25875 -9.58212 -9.54330 -9.15799 -8.91274 -8.54517 -8.04370 -7.25499 -6.47114 -3.88230 1.10390 1.16380 1.88932 2.96256 3.13740 3.25180 3.33077 3.54976 3.80086 4.14630 4.45486 4.57217 4.76050 4.84513 4.87238 4.89635 5.06738 5.15928 5.17233 5.19183 5.28100 5.41360 5.54296 5.59371 5.66257 5.69528 5.77802 5.81902 5.93477 6.11059 6.20051 6.22998 6.27576 6.41613 6.77261 7.51088 7.97737 8.52127 9.10851 9.44851 9.95326 10.70472 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.062094 B = 0.002256 C = 0.002233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 450.820383 B =12407.216120 C =12537.642437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.023 3.977 3 Si 0.932 3.068 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.300 4.300 8 H 0.106 0.894 9 N -0.556 5.556 10 C 0.454 3.546 11 O -0.575 6.575 12 C -0.110 4.110 13 S -0.186 6.186 14 C -0.113 4.113 15 C -0.093 4.093 16 C -0.077 4.077 17 C -0.078 4.078 18 C -0.117 4.117 19 C -0.119 4.119 20 C -0.128 4.128 21 C -0.119 4.119 22 C -0.117 4.117 23 H 0.272 0.728 24 H 0.393 0.607 25 H 0.093 0.907 26 H 0.093 0.907 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.122 0.878 34 H 0.120 0.880 35 H 0.119 0.881 36 H 0.120 0.880 37 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.720 -24.118 0.001 24.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.179 4.179 3 Si 0.759 3.241 4 H -0.191 1.191 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.429 4.429 8 H 0.123 0.877 9 N -0.192 5.192 10 C 0.238 3.762 11 O -0.460 6.460 12 C -0.261 4.261 13 S 0.041 5.959 14 C -0.262 4.262 15 C -0.132 4.132 16 C -0.116 4.116 17 C -0.078 4.078 18 C -0.135 4.135 19 C -0.137 4.137 20 C -0.146 4.146 21 C -0.137 4.137 22 C -0.135 4.135 23 H 0.082 0.918 24 H 0.227 0.773 25 H 0.111 0.889 26 H 0.111 0.889 27 H 0.096 0.904 28 H 0.095 0.905 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.140 0.860 34 H 0.138 0.862 35 H 0.137 0.863 36 H 0.138 0.862 37 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 1.062 -23.869 0.000 23.892 hybrid contribution -1.736 0.837 0.001 1.927 sum -0.674 -23.032 0.001 23.042 Atomic orbital electron populations 1.69619 1.05985 1.28227 1.50251 1.25299 0.95680 0.99838 0.97093 0.85760 0.79757 0.80861 0.77751 1.19104 1.20673 1.20669 1.19792 0.93490 0.81968 1.47687 0.87667 1.41780 1.09237 1.04287 1.63898 1.19022 0.88026 0.83880 0.85287 1.90567 1.13341 1.86515 1.55539 1.23428 1.00877 0.96504 1.05332 1.87425 1.13327 0.97164 1.97991 1.23509 1.01284 0.96851 1.04513 1.21229 0.97543 0.90625 1.03799 1.20641 0.96829 0.90954 1.03199 1.19918 0.98299 0.96390 0.93223 1.21098 0.98572 0.96102 0.97728 1.21154 0.98285 0.96206 0.98084 1.21144 1.00540 1.00210 0.92698 1.21154 0.98260 0.96222 0.98090 1.21097 0.98548 0.96135 0.97720 0.91803 0.77315 0.88867 0.88863 0.90448 0.90453 0.90822 0.90819 0.90756 0.90751 0.86013 0.86165 0.86295 0.86163 0.86015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.39 13.05 55.50 0.72 -23.66 16 2 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 3 Si 0.93 21.03 29.55 -169.99 -5.02 16.01 16 4 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 5 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 6 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.30 -8.41 9.68 -14.93 -0.14 -8.56 16 8 H 0.11 3.10 7.16 -52.49 -0.38 2.73 16 9 N -0.56 -14.24 5.29 -10.96 -0.06 -14.30 16 10 C 0.45 11.04 7.80 -10.99 -0.09 10.95 16 11 O -0.58 -16.20 15.44 5.54 0.09 -16.11 16 12 C -0.11 -2.00 6.42 36.01 0.23 -1.77 16 13 S -0.19 -3.24 20.87 -107.50 -2.24 -5.48 16 14 C -0.11 -1.33 5.94 37.16 0.22 -1.11 16 15 C -0.09 -0.97 5.20 -26.74 -0.14 -1.11 16 16 C -0.08 -0.65 5.34 -27.88 -0.15 -0.80 16 17 C -0.08 -0.72 5.13 -104.62 -0.54 -1.26 16 18 C -0.12 -1.04 9.70 -39.58 -0.38 -1.42 16 19 C -0.12 -0.99 10.05 -39.58 -0.40 -1.38 16 20 C -0.13 -1.03 10.05 -39.58 -0.40 -1.43 16 21 C -0.12 -0.99 10.05 -39.58 -0.40 -1.38 16 22 C -0.12 -1.04 9.70 -39.58 -0.38 -1.42 16 23 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 24 H 0.39 9.53 7.90 -40.82 -0.32 9.21 16 25 H 0.09 1.50 8.14 -51.92 -0.42 1.08 16 26 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 27 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.08 0.83 8.14 -51.92 -0.42 0.41 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.07 0.57 8.09 -51.93 -0.42 0.15 16 32 H 0.07 0.57 8.09 -51.93 -0.42 0.15 16 33 H 0.12 0.92 8.06 -52.48 -0.42 0.50 16 34 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 35 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 36 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 37 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 LS Contribution 334.77 15.07 5.04 5.04 Total: -1.00 -31.95 334.77 -9.45 -41.40 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: -5.32 Total: 7.28 kcal Atomic # 6 Polarization: -7.52 SS G_CDS: -2.66 Total: -10.18 kcal Atomic # 7 Polarization: -38.63 SS G_CDS: 0.67 Total: -37.96 kcal Atomic # 8 Polarization: -16.20 SS G_CDS: 0.09 Total: -16.11 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Atomic # 16 Polarization: -3.24 SS G_CDS: -2.24 Total: -5.48 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.95 -9.45 -41.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126755005.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.560 kcal (2) G-P(sol) polarization free energy of solvation -31.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds