Wall clock time and date at job start Wed Apr 15 2020 11:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86799 * 120.00128 * 2 1 4 4 H 1.48499 * 109.47120 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47415 * 300.00145 * 3 2 1 6 6 H 1.48497 * 109.47085 * 60.00004 * 3 2 1 7 7 C 1.38954 * 119.99996 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00161 * 179.97438 * 7 2 1 9 9 N 1.37095 * 120.00022 * 359.97438 * 7 2 1 10 10 C 1.34775 * 120.00440 * 180.02562 * 9 7 2 11 11 O 1.21299 * 119.99563 * 359.97438 * 10 9 7 12 12 C 1.50700 * 120.00183 * 179.97438 * 10 9 7 13 13 S 1.81401 * 109.46696 * 179.97438 * 12 10 9 14 14 C 1.81408 * 102.99615 * 180.02562 * 13 12 10 15 15 C 1.52997 * 109.46973 * 180.02562 * 14 13 12 16 16 C 1.52995 * 109.47085 * 179.97438 * 15 14 13 17 17 C 1.50707 * 109.47301 * 179.97438 * 16 15 14 18 18 C 1.38238 * 119.99792 * 90.00016 * 17 16 15 19 19 C 1.38235 * 119.99712 * 179.97438 * 18 17 16 20 20 C 1.38234 * 120.00220 * 359.97124 * 19 18 17 21 21 C 1.38233 * 120.00037 * 0.28719 * 20 19 18 22 22 C 1.38234 * 120.00179 * 269.97953 * 17 16 15 23 23 H 0.97002 * 120.00105 * 359.97438 * 1 2 3 24 24 H 0.97006 * 119.99958 * 0.02562 * 9 7 2 25 25 H 1.09006 * 109.46916 * 60.00251 * 12 10 9 26 26 H 1.08994 * 109.47036 * 299.99568 * 12 10 9 27 27 H 1.08992 * 109.47499 * 60.00165 * 14 13 12 28 28 H 1.08999 * 109.46513 * 299.99835 * 14 13 12 29 29 H 1.08995 * 109.47671 * 59.99598 * 15 14 13 30 30 H 1.09004 * 109.46984 * 299.99614 * 15 14 13 31 31 H 1.09005 * 109.47610 * 59.99944 * 16 15 14 32 32 H 1.09000 * 109.47256 * 299.99285 * 16 15 14 33 33 H 1.08005 * 120.00068 * 359.97438 * 18 17 16 34 34 H 1.07999 * 119.99770 * 179.97438 * 19 18 17 35 35 H 1.08002 * 119.99744 * 180.02562 * 20 19 18 36 36 H 1.07998 * 120.00395 * 179.72811 * 21 20 19 37 37 H 1.07999 * 119.99968 * 359.97438 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3463 -0.0006 5 1 1.8894 2.3965 -1.2124 6 1 1.8894 2.3964 1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0010 9 7 1.3234 -2.3907 -0.0005 10 6 1.9972 -3.5579 -0.0005 11 8 3.2102 -3.5579 -0.0010 12 6 1.2436 -4.8630 0.0000 13 16 2.4225 -6.2417 -0.0009 14 6 1.3441 -7.7005 -0.0008 15 6 2.2009 -8.9680 -0.0009 16 6 1.2915 -10.1983 -0.0002 17 6 2.1354 -11.4469 -0.0010 18 6 2.5234 -12.0196 1.1959 19 6 3.2970 -13.1652 1.1952 20 6 3.6822 -13.7384 -0.0022 21 6 3.2987 -13.1628 -1.1991 22 6 2.5211 -12.0198 -1.1984 23 1 -0.4850 0.8401 0.0004 24 1 0.3533 -2.3906 -0.0005 25 1 0.6166 -4.9209 -0.8898 26 1 0.6174 -4.9205 0.8903 27 1 0.7146 -7.6870 -0.8905 28 1 0.7154 -7.6874 0.8895 29 1 2.8302 -8.9814 0.8889 30 1 2.8300 -8.9813 -0.8910 31 1 0.6618 -10.1853 -0.8899 32 1 0.6628 -10.1850 0.8901 33 1 2.2221 -11.5720 2.1315 34 1 3.6005 -13.6124 2.1303 35 1 4.2863 -14.6337 -0.0027 36 1 3.6033 -13.6081 -2.1346 37 1 2.2174 -11.5728 -2.1335 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126755005.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:06 Heat of formation + Delta-G solvation = -50.640130 kcal Electronic energy + Delta-G solvation = -17539.203334 eV Core-core repulsion = 14598.997370 eV Total energy + Delta-G solvation = -2940.205964 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.103 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.15531 -40.08312 -36.12900 -36.01539 -33.41394 -32.01000 -31.72397 -30.87976 -27.45132 -26.64278 -23.42045 -23.33634 -21.72267 -21.31253 -20.02838 -17.91623 -17.67072 -17.13850 -16.67277 -16.47771 -16.17590 -16.01883 -15.76467 -15.42944 -14.86674 -14.54775 -14.25373 -14.23005 -13.78485 -13.67251 -13.44960 -13.13002 -12.89809 -12.85144 -12.49870 -12.38832 -12.11031 -11.98149 -11.68336 -11.58133 -11.56990 -10.78172 -10.54669 -10.09408 -9.78028 -9.55587 -8.61906 -8.52174 -6.01650 0.42201 0.54101 0.65164 1.34183 1.41183 1.55713 1.73474 1.92884 2.27975 2.91916 3.11343 3.13955 3.73135 3.90808 4.10318 4.18337 4.20016 4.20198 4.27001 4.35653 4.41975 4.44526 4.47901 4.65770 4.71897 4.76931 4.86729 5.09269 5.19210 5.24385 5.33015 5.37093 5.61988 5.66843 5.77579 5.91030 6.17595 6.49972 7.04685 7.44012 7.99312 8.65238 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.062094 B = 0.002256 C = 0.002233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 450.820383 B =12407.216120 C =12537.642437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.010 4.010 3 Si 0.996 3.004 4 H -0.274 1.274 5 H -0.269 1.269 6 H -0.269 1.269 7 C -0.336 4.336 8 H 0.079 0.921 9 N -0.563 5.563 10 C 0.448 3.552 11 O -0.619 6.619 12 C -0.093 4.093 13 S -0.255 6.255 14 C -0.088 4.088 15 C -0.087 4.087 16 C -0.068 4.068 17 C -0.093 4.093 18 C -0.131 4.131 19 C -0.130 4.130 20 C -0.136 4.136 21 C -0.130 4.130 22 C -0.131 4.131 23 H 0.280 0.720 24 H 0.399 0.601 25 H 0.119 0.881 26 H 0.119 0.881 27 H 0.095 0.905 28 H 0.095 0.905 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.131 0.869 34 H 0.137 0.863 35 H 0.138 0.862 36 H 0.137 0.863 37 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.878 -25.005 0.002 25.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.211 4.211 3 Si 0.819 3.181 4 H -0.199 1.199 5 H -0.194 1.194 6 H -0.194 1.194 7 C -0.466 4.466 8 H 0.097 0.903 9 N -0.199 5.199 10 C 0.234 3.766 11 O -0.507 6.507 12 C -0.244 4.244 13 S -0.029 6.029 14 C -0.236 4.236 15 C -0.126 4.126 16 C -0.107 4.107 17 C -0.093 4.093 18 C -0.149 4.149 19 C -0.148 4.148 20 C -0.154 4.154 21 C -0.148 4.148 22 C -0.149 4.149 23 H 0.089 0.911 24 H 0.233 0.767 25 H 0.137 0.863 26 H 0.137 0.863 27 H 0.114 0.886 28 H 0.114 0.886 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.104 0.896 32 H 0.104 0.896 33 H 0.148 0.852 34 H 0.154 0.846 35 H 0.155 0.845 36 H 0.154 0.846 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -0.131 -24.762 0.001 24.762 hybrid contribution -1.368 0.985 0.001 1.685 sum -1.499 -23.777 0.002 23.824 Atomic orbital electron populations 1.69668 1.06814 1.29498 1.49692 1.26084 0.96614 1.02475 0.95910 0.84834 0.77975 0.76816 0.78487 1.19873 1.19386 1.19373 1.19723 0.92760 0.83781 1.50334 0.90280 1.41821 1.09416 1.04346 1.64357 1.20002 0.87897 0.85461 0.83212 1.90536 1.15628 1.87575 1.56914 1.23222 1.00292 0.93079 1.07786 1.87674 1.16710 1.00246 1.98238 1.23559 1.00274 0.93509 1.06265 1.21177 0.97625 0.90956 1.02871 1.20565 0.96371 0.89395 1.04325 1.20066 0.98859 0.96856 0.93504 1.21334 0.98880 0.96547 0.98138 1.21448 0.98108 0.96179 0.99034 1.21460 1.00513 1.00832 0.92600 1.21449 0.98085 0.96195 0.99041 1.21333 0.98857 0.96578 0.98129 0.91066 0.76651 0.86263 0.86259 0.88631 0.88637 0.91831 0.91829 0.89618 0.89613 0.85157 0.84560 0.84460 0.84560 0.85158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.02 13.05 21.66 0.28 -48.74 16 2 C -0.01 -0.56 5.50 84.93 0.47 -0.09 16 3 Si 1.00 42.89 29.55 68.60 2.03 44.92 16 4 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 5 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 6 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 7 C -0.34 -19.29 9.68 84.04 0.81 -18.47 16 8 H 0.08 4.87 7.16 -2.91 -0.02 4.85 16 9 N -0.56 -29.20 5.29 -306.98 -1.62 -30.83 16 10 C 0.45 22.04 7.80 87.66 0.68 22.72 16 11 O -0.62 -35.98 15.44 -3.09 -0.05 -36.03 16 12 C -0.09 -3.27 6.42 71.24 0.46 -2.81 16 13 S -0.26 -8.75 20.87 -56.49 -1.18 -9.93 16 14 C -0.09 -1.86 5.94 71.98 0.43 -1.43 16 15 C -0.09 -1.69 5.20 30.59 0.16 -1.53 16 16 C -0.07 -0.99 5.34 29.85 0.16 -0.83 16 17 C -0.09 -1.58 5.13 -19.86 -0.10 -1.68 16 18 C -0.13 -2.17 9.70 22.27 0.22 -1.96 16 19 C -0.13 -1.98 10.05 22.27 0.22 -1.76 16 20 C -0.14 -2.00 10.05 22.27 0.22 -1.78 16 21 C -0.13 -1.98 10.05 22.27 0.22 -1.76 16 22 C -0.13 -2.17 9.70 22.27 0.22 -1.96 16 23 H 0.28 13.91 8.31 -92.71 -0.77 13.14 16 24 H 0.40 19.35 7.90 -92.70 -0.73 18.62 16 25 H 0.12 3.57 8.14 -2.39 -0.02 3.55 16 26 H 0.12 3.57 8.14 -2.39 -0.02 3.55 16 27 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 31 H 0.09 1.07 8.09 -2.38 -0.02 1.06 16 32 H 0.09 1.08 8.09 -2.39 -0.02 1.06 16 33 H 0.13 1.81 8.06 -2.91 -0.02 1.79 16 34 H 0.14 1.52 8.06 -2.91 -0.02 1.50 16 35 H 0.14 1.40 8.06 -2.91 -0.02 1.38 16 36 H 0.14 1.52 8.06 -2.91 -0.02 1.50 16 37 H 0.13 1.81 8.06 -2.91 -0.02 1.79 16 Total: -1.00 -69.97 334.77 3.95 -66.01 By element: Atomic # 1 Polarization: 27.60 SS G_CDS: 0.32 Total: 27.92 kcal Atomic # 6 Polarization: -17.50 SS G_CDS: 4.17 Total: -13.33 kcal Atomic # 7 Polarization: -78.23 SS G_CDS: -1.34 Total: -79.57 kcal Atomic # 8 Polarization: -35.98 SS G_CDS: -0.05 Total: -36.03 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal Atomic # 16 Polarization: -8.75 SS G_CDS: -1.18 Total: -9.93 kcal Total: -69.97 3.95 -66.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126755005.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.371 kcal (2) G-P(sol) polarization free energy of solvation -69.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds