Wall clock time and date at job start Wed Apr 15 2020 11:44:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86798 * 120.00062 * 2 1 4 4 H 1.48506 * 109.47074 * 269.99345 * 3 2 1 5 5 H 1.48494 * 109.47433 * 29.99720 * 3 2 1 6 6 H 1.48504 * 109.47062 * 149.99942 * 3 2 1 7 7 C 1.38722 * 119.99793 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00221 * 0.02562 * 7 2 1 9 9 O 1.34789 * 119.99786 * 180.02562 * 7 2 1 10 10 C 1.35572 * 116.99596 * 185.06048 * 9 7 2 11 11 C 1.39178 * 119.90257 * 354.35676 * 10 9 7 12 12 C 1.37588 * 120.10114 * 179.97438 * 11 10 9 13 13 C 1.40030 * 119.90025 * 0.02562 * 12 11 10 14 14 C 1.46964 * 120.09989 * 179.97438 * 13 12 11 15 15 C 1.35017 * 119.99619 * 136.68065 * 14 13 12 16 16 C 1.46256 * 120.00525 * 348.68509 * 15 14 13 17 17 O 1.21720 * 119.99475 * 353.21132 * 16 15 14 18 18 N 1.34771 * 120.00535 * 172.93861 * 16 15 14 19 19 C 1.46502 * 120.00464 * 180.27636 * 18 16 15 20 20 C 1.52998 * 109.47169 * 179.97438 * 19 18 16 21 21 F 1.39902 * 109.46746 * 179.97438 * 20 19 18 22 22 C 1.40023 * 119.79516 * 0.27227 * 13 12 11 23 23 C 1.37594 * 119.89817 * 359.44840 * 22 13 12 24 24 H 0.96996 * 119.99888 * 0.02562 * 1 2 3 25 25 H 1.08003 * 119.94478 * 359.96046 * 11 10 9 26 26 H 1.08005 * 120.05207 * 180.02562 * 12 11 10 27 27 H 1.08001 * 120.00166 * 316.67749 * 14 13 12 28 28 H 1.08006 * 120.00014 * 168.68163 * 15 14 13 29 29 H 0.97002 * 119.99760 * 0.26557 * 18 16 15 30 30 H 1.09004 * 109.46441 * 299.99989 * 19 18 16 31 31 H 1.08997 * 109.46936 * 59.99116 * 19 18 16 32 32 H 1.09002 * 109.47083 * 300.00006 * 20 19 18 33 33 H 1.09003 * 109.47256 * 59.99984 * 20 19 18 34 34 H 1.07999 * 120.04562 * 179.72530 * 22 13 12 35 35 H 1.07998 * 119.94783 * 180.25484 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5466 1.4401 0.7001 7 6 2.0086 -1.2014 0.0005 8 1 1.4686 -2.1367 0.0005 9 8 3.3565 -1.2014 0.0011 10 6 3.9719 -2.4047 -0.1050 11 6 3.2171 -3.5739 -0.0894 12 6 3.8374 -4.7972 -0.1973 13 6 5.2304 -4.8649 -0.3224 14 6 5.8976 -6.1693 -0.4373 15 6 6.8885 -6.3437 -1.3378 16 6 7.1334 -5.3283 -2.3616 17 8 6.3698 -4.3880 -2.4809 18 7 8.2074 -5.4309 -3.1692 19 6 8.4560 -4.4106 -4.1907 20 6 9.7291 -4.7620 -4.9632 21 9 9.9661 -3.7879 -5.9391 22 6 5.9863 -3.6863 -0.3312 23 6 5.3568 -2.4670 -0.2286 24 1 -0.4850 0.8400 -0.0004 25 1 2.1427 -3.5207 0.0077 26 1 3.2508 -5.7040 -0.1856 27 1 5.5954 -6.9884 0.1985 28 1 7.5003 -7.2330 -1.3020 29 1 8.8160 -6.1803 -3.0739 30 1 7.6117 -4.3725 -4.8790 31 1 8.5784 -3.4392 -3.7117 32 1 10.5732 -4.7999 -4.2746 33 1 9.6070 -5.7335 -5.4422 34 1 7.0613 -3.7339 -0.4230 35 1 5.9387 -1.5573 -0.2395 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493470403.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:13 Heat of formation + Delta-G solvation = -84.160820 kcal Electronic energy + Delta-G solvation = -20612.019364 eV Core-core repulsion = 17104.146657 eV Total energy + Delta-G solvation = -3507.872707 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.106 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -48.67964 -41.17077 -40.47945 -38.35558 -36.12084 -34.65802 -34.10106 -31.86607 -31.11423 -29.45396 -27.32924 -24.99011 -23.67590 -23.40982 -22.33121 -20.59812 -19.72238 -19.15360 -18.19305 -17.48872 -17.40604 -16.66148 -16.30933 -16.14442 -16.01703 -15.71362 -15.65877 -15.28778 -14.91878 -14.65523 -14.30281 -14.26453 -14.19423 -13.87143 -13.72874 -13.11669 -12.68244 -12.50995 -12.29470 -12.21292 -11.96903 -11.88621 -11.34869 -11.05265 -10.76486 -10.46163 -10.11909 -9.61888 -8.62225 -8.53231 -6.24230 -0.04423 0.67020 1.07726 1.27545 1.33835 1.48828 2.20767 2.25636 2.45087 2.78740 3.03609 3.21917 3.56847 3.85718 3.95978 4.03671 4.09608 4.12896 4.18786 4.35503 4.52421 4.58626 4.65823 4.77418 4.90370 4.95111 5.18103 5.21187 5.39671 5.42065 5.45241 5.66799 5.76939 5.81768 5.89469 6.25396 6.66415 6.80973 7.40769 7.56803 8.58455 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.018910 B = 0.003976 C = 0.003430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.350917 B = 7040.136659 C = 8161.467487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.012 3.988 3 Si 0.969 3.031 4 H -0.268 1.268 5 H -0.261 1.261 6 H -0.265 1.265 7 C -0.402 4.402 8 H 0.082 0.918 9 O -0.245 6.245 10 C 0.132 3.868 11 C -0.253 4.253 12 C -0.053 4.053 13 C -0.152 4.152 14 C 0.001 3.999 15 C -0.224 4.224 16 C 0.526 3.474 17 O -0.568 6.568 18 N -0.711 5.711 19 C 0.087 3.913 20 C 0.061 3.939 21 F -0.229 7.229 22 C 0.009 3.991 23 C -0.211 4.211 24 H 0.286 0.714 25 H 0.109 0.891 26 H 0.144 0.856 27 H 0.170 0.830 28 H 0.180 0.820 29 H 0.421 0.579 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.108 0.892 33 H 0.108 0.892 34 H 0.127 0.873 35 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.887 -16.982 -4.900 28.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.187 4.187 3 Si 0.791 3.209 4 H -0.193 1.193 5 H -0.186 1.186 6 H -0.189 1.189 7 C -0.478 4.478 8 H 0.100 0.900 9 O -0.152 6.152 10 C 0.083 3.917 11 C -0.272 4.272 12 C -0.071 4.071 13 C -0.153 4.153 14 C -0.018 4.018 15 C -0.244 4.244 16 C 0.316 3.684 17 O -0.448 6.448 18 N -0.366 5.366 19 C -0.039 4.039 20 C 0.006 3.994 21 F -0.210 7.210 22 C -0.009 4.009 23 C -0.230 4.230 24 H 0.096 0.904 25 H 0.127 0.873 26 H 0.162 0.838 27 H 0.187 0.813 28 H 0.198 0.802 29 H 0.259 0.741 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.126 0.874 33 H 0.126 0.874 34 H 0.145 0.855 35 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 21.271 -15.944 -5.013 27.052 hybrid contribution -0.376 0.803 -0.207 0.910 sum 20.895 -15.141 -5.219 26.327 Atomic orbital electron populations 1.69698 1.06819 1.29668 1.49906 1.25276 0.95904 1.02052 0.95435 0.85246 0.78828 0.77561 0.79228 1.19329 1.18566 1.18935 1.20769 0.78046 0.96259 1.52744 0.90024 1.83452 1.21418 1.27747 1.82582 1.19757 0.92884 0.85130 0.93953 1.21123 1.00033 0.93205 1.12857 1.21174 0.94169 0.96366 0.95375 1.18961 0.92880 0.94305 1.09124 1.22599 0.90750 0.93793 0.94636 1.23059 1.02885 1.01501 0.96963 1.19159 0.80463 0.86038 0.82700 1.91021 1.47308 1.35033 1.71444 1.45511 1.27686 1.28088 1.35274 1.21738 0.98376 0.92661 0.91088 1.22197 0.97426 0.90618 0.89158 1.92765 1.95596 1.66915 1.65736 1.20756 0.98766 0.90286 0.91076 1.20258 0.90752 0.99393 1.12606 0.90447 0.87316 0.83841 0.81310 0.80245 0.74055 0.92592 0.92416 0.87369 0.87422 0.85540 0.86579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.70 13.96 21.62 0.30 -56.40 16 2 C 0.01 0.72 5.49 84.86 0.47 1.19 16 3 Si 0.97 47.65 28.62 68.60 1.96 49.62 16 4 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16 5 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 6 H -0.26 -13.10 7.11 99.48 0.71 -12.39 16 7 C -0.40 -25.03 9.94 67.94 0.68 -24.35 16 8 H 0.08 5.30 5.41 -2.91 -0.02 5.28 16 9 O -0.24 -14.36 8.57 -20.36 -0.17 -14.54 16 10 C 0.13 6.84 6.66 22.72 0.15 6.99 16 11 C -0.25 -12.08 9.14 22.34 0.20 -11.88 16 12 C -0.05 -1.97 9.78 22.55 0.22 -1.75 16 13 C -0.15 -4.97 4.54 -20.12 -0.09 -5.06 16 14 C 0.00 0.03 9.80 23.82 0.23 0.26 16 15 C -0.22 -3.58 9.90 23.61 0.23 -3.35 16 16 C 0.53 12.05 6.77 86.33 0.58 12.63 16 17 O -0.57 -20.11 12.18 -4.41 -0.05 -20.16 16 18 N -0.71 -10.14 5.55 -467.50 -2.60 -12.74 16 19 C 0.09 1.48 6.13 86.38 0.53 2.01 16 20 C 0.06 0.59 7.67 71.98 0.55 1.14 16 21 F -0.23 -4.11 17.36 44.97 0.78 -3.33 16 22 C 0.01 0.34 6.60 22.55 0.15 0.49 16 23 C -0.21 -9.37 9.97 22.34 0.22 -9.15 16 24 H 0.29 16.07 8.31 -92.71 -0.77 15.30 16 25 H 0.11 5.61 5.62 -2.91 -0.02 5.59 16 26 H 0.14 4.26 8.06 -2.91 -0.02 4.23 16 27 H 0.17 2.09 8.06 -2.91 -0.02 2.07 16 28 H 0.18 0.98 8.06 -2.91 -0.02 0.96 16 29 H 0.42 2.04 8.45 -92.71 -0.78 1.26 16 30 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 31 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.11 0.48 8.14 -2.39 -0.02 0.46 16 34 H 0.13 3.95 7.02 -2.91 -0.02 3.93 16 35 H 0.12 4.93 8.06 -2.91 -0.02 4.91 16 Total: -1.00 -81.74 309.58 4.70 -77.04 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: 0.34 Total: 11.33 kcal Atomic # 6 Polarization: -34.95 SS G_CDS: 4.13 Total: -30.82 kcal Atomic # 7 Polarization: -66.85 SS G_CDS: -2.29 Total: -69.14 kcal Atomic # 8 Polarization: -34.47 SS G_CDS: -0.23 Total: -34.70 kcal Atomic # 9 Polarization: -4.11 SS G_CDS: 0.78 Total: -3.33 kcal Atomic # 14 Polarization: 47.65 SS G_CDS: 1.96 Total: 49.62 kcal Total: -81.74 4.70 -77.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493470403.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.119 kcal (2) G-P(sol) polarization free energy of solvation -81.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds