Wall clock time and date at job start Wed Apr 15 2020 11:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31567 * 1 3 3 Si 1.86799 * 120.00016 * 2 1 4 4 H 1.48504 * 109.47120 * 270.00577 * 3 2 1 5 5 H 1.48494 * 109.46977 * 30.00289 * 3 2 1 6 6 H 1.48503 * 109.47070 * 150.00309 * 3 2 1 7 7 C 1.38641 * 120.00168 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00109 * 179.97438 * 7 2 1 9 9 O 1.34814 * 119.99937 * 359.97438 * 7 2 1 10 10 C 1.35663 * 117.00066 * 185.06401 * 9 7 2 11 11 C 1.38742 * 120.13624 * 354.40864 * 10 9 7 12 12 C 1.38123 * 120.05265 * 180.02562 * 11 10 9 13 13 C 1.38455 * 120.32802 * 359.94867 * 12 11 10 14 14 C 1.37995 * 120.27664 * 0.02977 * 13 12 11 15 15 C 1.39324 * 119.94419 * 359.97438 * 14 13 12 16 16 C 1.48220 * 120.16319 * 179.73096 * 15 14 13 17 17 C 1.39972 * 119.80866 * 130.00292 * 16 15 14 18 18 C 1.36346 * 120.39940 * 179.97438 * 17 16 15 19 19 C 1.39792 * 119.93602 * 359.97438 * 18 17 16 20 20 C 1.46442 * 133.84644 * 179.97438 * 19 18 17 21 21 C 1.34302 * 107.02788 * 180.02562 * 20 19 18 22 22 N 1.36815 * 109.94376 * 359.97438 * 21 20 19 23 23 H 0.96996 * 125.07582 * 179.97438 * 22 21 20 24 24 C 1.37770 * 109.85317 * 0.02562 * 22 21 20 25 25 C 1.38879 * 133.38098 * 180.30124 * 24 22 21 26 26 H 0.96995 * 119.99973 * 359.97438 * 1 2 3 27 27 H 1.08003 * 119.97478 * 0.02562 * 11 10 9 28 28 H 1.07999 * 119.83235 * 179.97438 * 12 11 10 29 29 H 1.07999 * 119.85769 * 180.02562 * 13 12 11 30 30 H 1.08002 * 120.02846 * 180.02562 * 14 13 12 31 31 H 1.07992 * 119.80061 * 359.94983 * 17 16 15 32 32 H 1.08000 * 120.02762 * 179.97438 * 18 17 16 33 33 H 1.08001 * 126.48374 * 0.02562 * 20 19 18 34 34 H 1.08002 * 125.02564 * 180.02562 * 21 20 19 35 35 H 1.07996 * 120.15644 * 359.93791 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 2.4971 2.0465 -1.4001 5 1 1.4472 2.6526 0.7001 6 1 3.5473 1.4401 0.7000 7 6 2.0089 -1.2006 -0.0005 8 1 3.0889 -1.2006 -0.0010 9 8 1.3349 -2.3682 -0.0005 10 6 2.0697 -3.5036 0.1056 11 6 3.4556 -3.4403 0.0913 12 6 4.2021 -4.5974 0.1989 13 6 3.5744 -5.8253 0.3227 14 6 2.1968 -5.9040 0.3389 15 6 1.4327 -4.7440 0.2310 16 6 -0.0474 -4.8235 0.2419 17 6 -0.7822 -3.9971 1.0999 18 6 -2.1441 -4.0598 1.1195 19 6 -2.8134 -4.9534 0.2783 20 6 -4.2253 -5.2695 0.0516 21 6 -4.2678 -6.2268 -0.8894 22 7 -2.9983 -6.5495 -1.2846 23 1 -2.7751 -7.2152 -1.9538 24 6 -2.0842 -5.7886 -0.5893 25 6 -0.6976 -5.7124 -0.6055 26 1 -0.4850 0.8400 0.0004 27 1 3.9512 -2.4854 -0.0041 28 1 5.2807 -4.5440 0.1870 29 1 4.1655 -6.7253 0.4068 30 1 1.7114 -6.8639 0.4360 31 1 -0.2674 -3.3059 1.7507 32 1 -2.7052 -3.4197 1.7842 33 1 -5.0720 -4.8182 0.5474 34 1 -5.1706 -6.6750 -1.2774 35 1 -0.1273 -6.3445 -1.2699 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240799219.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:26 Heat of formation + Delta-G solvation = 56.541499 kcal Electronic energy + Delta-G solvation = -20424.434999 eV Core-core repulsion = 17353.432827 eV Total energy + Delta-G solvation = -3071.002172 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.100 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.71437 -39.10234 -36.66746 -35.95112 -32.30881 -31.88789 -30.39549 -29.11781 -28.70777 -27.16274 -25.33032 -22.85005 -21.93209 -21.23216 -20.31571 -20.06313 -17.95020 -17.60851 -16.80727 -15.70461 -15.17473 -14.60902 -14.41019 -14.05634 -13.90784 -13.77522 -13.49716 -13.36303 -13.10660 -12.76869 -12.57030 -12.22019 -11.68092 -11.43401 -11.22682 -11.06029 -10.86846 -10.67784 -10.64860 -10.42449 -10.25829 -9.34725 -9.27590 -8.83836 -8.27223 -7.58478 -7.33481 -6.95240 -6.43297 -4.01937 1.50223 2.08693 2.36825 2.44522 3.10743 3.13508 3.14426 3.18912 3.46041 3.96641 4.43918 4.67106 5.09904 5.10513 5.24384 5.25663 5.42863 5.65881 5.67381 5.80347 5.83611 5.98011 6.05536 6.13425 6.25000 6.34288 6.45110 6.58137 6.69899 6.82297 7.02226 7.09873 7.14388 7.21051 7.29187 7.32243 7.37311 7.50497 7.73988 7.81452 7.86737 8.00023 9.00934 9.70522 10.72966 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.014591 B = 0.006190 C = 0.004545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.480070 B = 4522.240036 C = 6158.943282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.852 5.852 2 C 0.043 3.957 3 Si 0.938 3.062 4 H -0.274 1.274 5 H -0.277 1.277 6 H -0.268 1.268 7 C -0.396 4.396 8 H 0.091 0.909 9 O -0.161 6.161 10 C 0.165 3.835 11 C -0.235 4.235 12 C -0.070 4.070 13 C -0.217 4.217 14 C -0.061 4.061 15 C -0.133 4.133 16 C 0.016 3.984 17 C -0.097 4.097 18 C -0.074 4.074 19 C -0.116 4.116 20 C -0.203 4.203 21 C 0.034 3.966 22 N -0.602 5.602 23 H 0.410 0.590 24 C 0.092 3.908 25 C -0.136 4.136 26 H 0.270 0.730 27 H 0.128 0.872 28 H 0.107 0.893 29 H 0.106 0.894 30 H 0.112 0.888 31 H 0.126 0.874 32 H 0.117 0.883 33 H 0.140 0.860 34 H 0.163 0.837 35 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.046 -10.476 -0.507 10.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.486 5.486 2 C -0.163 4.163 3 Si 0.763 3.237 4 H -0.200 1.200 5 H -0.203 1.203 6 H -0.192 1.192 7 C -0.472 4.472 8 H 0.109 0.891 9 O -0.063 6.063 10 C 0.110 3.890 11 C -0.254 4.254 12 C -0.089 4.089 13 C -0.236 4.236 14 C -0.079 4.079 15 C -0.134 4.134 16 C 0.015 3.985 17 C -0.116 4.116 18 C -0.092 4.092 19 C -0.121 4.121 20 C -0.229 4.229 21 C -0.092 4.092 22 N -0.206 5.206 23 H 0.245 0.755 24 C -0.014 4.014 25 C -0.157 4.157 26 H 0.080 0.920 27 H 0.146 0.854 28 H 0.125 0.875 29 H 0.124 0.876 30 H 0.130 0.870 31 H 0.144 0.856 32 H 0.135 0.865 33 H 0.158 0.842 34 H 0.180 0.820 35 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -3.504 -10.318 -0.612 10.914 hybrid contribution 0.648 0.607 -0.469 1.004 sum -2.856 -9.711 -1.081 10.180 Atomic orbital electron populations 1.70059 1.05793 1.27609 1.45144 1.25258 0.95815 0.98686 0.96510 0.85756 0.78978 0.80284 0.78680 1.19959 1.20263 1.19221 1.21333 0.91804 0.80900 1.53144 0.89142 1.84007 1.33911 1.11135 1.77285 1.19325 0.89992 0.87508 0.92169 1.21115 0.93550 0.99099 1.11627 1.20810 0.98468 0.92403 0.97191 1.20508 0.94161 0.96966 1.11944 1.20717 0.93396 0.95950 0.97820 1.17857 0.91167 0.91173 1.13204 1.18261 0.91576 0.94283 0.94370 1.20748 0.93233 0.98244 0.99393 1.20128 0.93904 0.97012 0.98196 1.19194 0.92850 0.99875 1.00147 1.21653 0.95038 1.02678 1.03554 1.21636 0.87061 1.00574 0.99924 1.41693 1.04910 1.36519 1.37428 0.75464 1.18088 0.90945 0.95831 0.96491 1.19922 0.89741 1.03295 1.02713 0.92029 0.85404 0.87517 0.87571 0.86980 0.85607 0.86480 0.84215 0.82002 0.86828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.51 13.67 55.48 0.76 -23.75 16 2 C 0.04 1.15 5.49 -17.52 -0.10 1.05 16 3 Si 0.94 20.33 29.55 -169.99 -5.02 15.30 16 4 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 5 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 6 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 7 C -0.40 -10.84 9.49 30.88 0.29 -10.55 16 8 H 0.09 2.31 5.21 -52.49 -0.27 2.03 16 9 O -0.16 -4.47 8.10 0.36 0.00 -4.47 16 10 C 0.17 3.98 6.55 -38.73 -0.25 3.72 16 11 C -0.23 -5.09 9.16 -39.44 -0.36 -5.45 16 12 C -0.07 -1.29 10.03 -39.54 -0.40 -1.69 16 13 C -0.22 -3.77 10.03 -39.59 -0.40 -4.17 16 14 C -0.06 -1.12 9.49 -39.27 -0.37 -1.49 16 15 C -0.13 -2.86 5.47 -104.73 -0.57 -3.43 16 16 C 0.02 0.35 5.28 -104.88 -0.55 -0.21 16 17 C -0.10 -2.12 8.70 -39.61 -0.34 -2.46 16 18 C -0.07 -1.46 10.04 -39.68 -0.40 -1.86 16 19 C -0.12 -2.16 6.37 -105.05 -0.67 -2.83 16 20 C -0.20 -3.05 11.08 -37.67 -0.42 -3.47 16 21 C 0.03 0.42 11.82 -16.72 -0.20 0.22 16 22 N -0.60 -8.15 6.07 -10.65 -0.06 -8.21 16 23 H 0.41 4.13 8.96 -40.82 -0.37 3.76 16 24 C 0.09 1.63 7.26 -84.00 -0.61 1.02 16 25 C -0.14 -2.54 9.52 -39.08 -0.37 -2.91 16 26 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 27 H 0.13 2.75 5.64 -52.48 -0.30 2.46 16 28 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 29 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 30 H 0.11 1.77 8.04 -52.49 -0.42 1.35 16 31 H 0.13 2.93 7.67 -52.49 -0.40 2.53 16 32 H 0.12 2.10 8.06 -52.49 -0.42 1.68 16 33 H 0.14 1.78 8.06 -52.49 -0.42 1.35 16 34 H 0.16 1.33 8.06 -52.49 -0.42 0.90 16 35 H 0.11 1.88 8.03 -52.49 -0.42 1.46 16 LS Contribution 306.65 15.07 4.62 4.62 Total: -1.00 -31.57 306.65 -8.86 -40.43 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -3.43 Total: 10.57 kcal Atomic # 6 Polarization: -28.78 SS G_CDS: -5.72 Total: -34.50 kcal Atomic # 7 Polarization: -32.65 SS G_CDS: 0.69 Total: -31.96 kcal Atomic # 8 Polarization: -4.47 SS G_CDS: 0.00 Total: -4.47 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -31.57 -8.86 -40.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240799219.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.970 kcal (2) G-P(sol) polarization free energy of solvation -31.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds