Wall clock time and date at job start Wed Apr 15 2020 11:44:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31567 * 1 3 3 Si 1.86799 * 120.00016 * 2 1 4 4 H 1.48504 * 109.47120 * 270.00577 * 3 2 1 5 5 H 1.48494 * 109.46977 * 30.00289 * 3 2 1 6 6 H 1.48503 * 109.47070 * 150.00309 * 3 2 1 7 7 C 1.38641 * 120.00168 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00109 * 179.97438 * 7 2 1 9 9 O 1.34814 * 119.99937 * 359.97438 * 7 2 1 10 10 C 1.35663 * 117.00066 * 185.06401 * 9 7 2 11 11 C 1.38742 * 120.13624 * 354.40864 * 10 9 7 12 12 C 1.38123 * 120.05265 * 180.02562 * 11 10 9 13 13 C 1.38455 * 120.32802 * 359.94867 * 12 11 10 14 14 C 1.37995 * 120.27664 * 0.02977 * 13 12 11 15 15 C 1.39324 * 119.94419 * 359.97438 * 14 13 12 16 16 C 1.48220 * 120.16319 * 179.73096 * 15 14 13 17 17 C 1.39972 * 119.80866 * 130.00292 * 16 15 14 18 18 C 1.36346 * 120.39940 * 179.97438 * 17 16 15 19 19 C 1.39792 * 119.93602 * 359.97438 * 18 17 16 20 20 C 1.46442 * 133.84644 * 179.97438 * 19 18 17 21 21 C 1.34302 * 107.02788 * 180.02562 * 20 19 18 22 22 N 1.36815 * 109.94376 * 359.97438 * 21 20 19 23 23 H 0.96996 * 125.07582 * 179.97438 * 22 21 20 24 24 C 1.37770 * 109.85317 * 0.02562 * 22 21 20 25 25 C 1.38879 * 133.38098 * 180.30124 * 24 22 21 26 26 H 0.96995 * 119.99973 * 359.97438 * 1 2 3 27 27 H 1.08003 * 119.97478 * 0.02562 * 11 10 9 28 28 H 1.07999 * 119.83235 * 179.97438 * 12 11 10 29 29 H 1.07999 * 119.85769 * 180.02562 * 13 12 11 30 30 H 1.08002 * 120.02846 * 180.02562 * 14 13 12 31 31 H 1.07992 * 119.80061 * 359.94983 * 17 16 15 32 32 H 1.08000 * 120.02762 * 179.97438 * 18 17 16 33 33 H 1.08001 * 126.48374 * 0.02562 * 20 19 18 34 34 H 1.08002 * 125.02564 * 180.02562 * 21 20 19 35 35 H 1.07996 * 120.15644 * 359.93791 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 2.4971 2.0465 -1.4001 5 1 1.4472 2.6526 0.7001 6 1 3.5473 1.4401 0.7000 7 6 2.0089 -1.2006 -0.0005 8 1 3.0889 -1.2006 -0.0010 9 8 1.3349 -2.3682 -0.0005 10 6 2.0697 -3.5036 0.1056 11 6 3.4556 -3.4403 0.0913 12 6 4.2021 -4.5974 0.1989 13 6 3.5744 -5.8253 0.3227 14 6 2.1968 -5.9040 0.3389 15 6 1.4327 -4.7440 0.2310 16 6 -0.0474 -4.8235 0.2419 17 6 -0.7822 -3.9971 1.0999 18 6 -2.1441 -4.0598 1.1195 19 6 -2.8134 -4.9534 0.2783 20 6 -4.2253 -5.2695 0.0516 21 6 -4.2678 -6.2268 -0.8894 22 7 -2.9983 -6.5495 -1.2846 23 1 -2.7751 -7.2152 -1.9538 24 6 -2.0842 -5.7886 -0.5893 25 6 -0.6976 -5.7124 -0.6055 26 1 -0.4850 0.8400 0.0004 27 1 3.9512 -2.4854 -0.0041 28 1 5.2807 -4.5440 0.1870 29 1 4.1655 -6.7253 0.4068 30 1 1.7114 -6.8639 0.4360 31 1 -0.2674 -3.3059 1.7507 32 1 -2.7052 -3.4197 1.7842 33 1 -5.0720 -4.8182 0.5474 34 1 -5.1706 -6.6750 -1.2774 35 1 -0.1273 -6.3445 -1.2699 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240799219.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:25 Heat of formation + Delta-G solvation = 38.310451 kcal Electronic energy + Delta-G solvation = -20425.225556 eV Core-core repulsion = 17353.432827 eV Total energy + Delta-G solvation = -3071.792729 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.100 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.00953 -40.76743 -38.31728 -37.45739 -34.26140 -33.34454 -31.78846 -30.69350 -30.13630 -28.61320 -27.27574 -24.30334 -23.46129 -22.86144 -21.64101 -21.41158 -19.77367 -19.06258 -18.36752 -17.15999 -16.73889 -16.34524 -16.08961 -15.60551 -15.29750 -15.22536 -15.09512 -14.85917 -14.61208 -14.33041 -13.88444 -13.62190 -13.52092 -13.06156 -12.72048 -12.59285 -12.44401 -12.30470 -12.18558 -12.09679 -11.73249 -11.13523 -10.78310 -10.63882 -9.76398 -9.12963 -8.82486 -8.43032 -8.39489 -6.09019 0.05431 0.55581 0.76325 0.94548 1.34740 1.43999 1.51604 1.90917 2.18446 2.32752 2.84025 3.01521 3.25629 3.53551 3.83961 3.97000 4.08784 4.22362 4.30187 4.40082 4.49881 4.52896 4.60381 4.69852 4.84119 4.89769 5.09103 5.11598 5.17319 5.18557 5.29528 5.55965 5.65031 5.70550 5.77814 5.81844 5.88287 5.92172 6.06179 6.26058 6.31190 6.83709 7.01411 7.83994 8.79327 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.014591 B = 0.006190 C = 0.004545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.480070 B = 4522.240036 C = 6158.943282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C -0.018 4.018 3 Si 1.014 2.986 4 H -0.265 1.265 5 H -0.273 1.273 6 H -0.254 1.254 7 C -0.416 4.416 8 H 0.099 0.901 9 O -0.209 6.209 10 C 0.123 3.877 11 C -0.250 4.250 12 C -0.069 4.069 13 C -0.191 4.191 14 C -0.061 4.061 15 C -0.140 4.140 16 C -0.016 4.016 17 C -0.122 4.122 18 C -0.090 4.090 19 C -0.135 4.135 20 C -0.237 4.237 21 C 0.072 3.928 22 N -0.586 5.586 23 H 0.430 0.570 24 C 0.078 3.922 25 C -0.126 4.126 26 H 0.270 0.730 27 H 0.119 0.881 28 H 0.145 0.855 29 H 0.153 0.847 30 H 0.144 0.856 31 H 0.088 0.912 32 H 0.120 0.880 33 H 0.158 0.842 34 H 0.220 0.780 35 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.719 -13.695 -1.783 14.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.217 4.217 3 Si 0.834 3.166 4 H -0.190 1.190 5 H -0.198 1.198 6 H -0.178 1.178 7 C -0.493 4.493 8 H 0.116 0.884 9 O -0.115 6.115 10 C 0.072 3.928 11 C -0.269 4.269 12 C -0.087 4.087 13 C -0.210 4.210 14 C -0.079 4.079 15 C -0.142 4.142 16 C -0.017 4.017 17 C -0.142 4.142 18 C -0.109 4.109 19 C -0.140 4.140 20 C -0.261 4.261 21 C -0.055 4.055 22 N -0.191 5.191 23 H 0.270 0.730 24 C -0.029 4.029 25 C -0.147 4.147 26 H 0.079 0.921 27 H 0.137 0.863 28 H 0.163 0.837 29 H 0.171 0.829 30 H 0.162 0.838 31 H 0.106 0.894 32 H 0.138 0.862 33 H 0.176 0.824 34 H 0.236 0.764 35 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -3.139 -13.612 -1.902 14.098 hybrid contribution 0.521 1.215 -0.087 1.325 sum -2.617 -12.397 -1.990 12.826 Atomic orbital electron populations 1.70224 1.07788 1.28421 1.48232 1.26480 0.96769 1.02413 0.95999 0.84654 0.77867 0.75029 0.79080 1.19029 1.19753 1.17774 1.21801 0.92418 0.81731 1.53309 0.88403 1.83998 1.35126 1.11979 1.80366 1.19945 0.91346 0.87655 0.93892 1.21267 0.92911 1.00375 1.12338 1.21239 1.00292 0.91471 0.95725 1.21100 0.93987 0.98178 1.07705 1.21148 0.94065 0.96037 0.96661 1.18257 0.91966 0.91406 1.12539 1.18355 0.91718 0.95805 0.95868 1.20555 0.94223 0.98881 1.00495 1.20229 0.93370 0.98035 0.99236 1.19610 0.95281 0.99391 0.99685 1.21983 0.93691 1.04715 1.05751 1.22485 0.87941 0.97971 0.97085 1.41769 1.04536 1.35901 1.36909 0.73044 1.18143 0.91067 0.96561 0.97092 1.20063 0.90598 1.02329 1.01701 0.92117 0.86323 0.83690 0.82900 0.83784 0.89415 0.86247 0.82421 0.76396 0.84483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.43 13.67 21.61 0.30 -56.13 16 2 C -0.02 -1.04 5.49 84.83 0.47 -0.58 16 3 Si 1.01 43.72 29.55 68.60 2.03 45.74 16 4 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 5 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 6 H -0.25 -10.20 7.11 99.48 0.71 -9.49 16 7 C -0.42 -24.52 9.49 67.92 0.64 -23.87 16 8 H 0.10 5.32 5.21 -2.91 -0.02 5.30 16 9 O -0.21 -12.65 8.10 -21.62 -0.18 -12.82 16 10 C 0.12 6.28 6.55 22.82 0.15 6.43 16 11 C -0.25 -11.07 9.16 22.36 0.20 -10.87 16 12 C -0.07 -2.38 10.03 22.29 0.22 -2.16 16 13 C -0.19 -5.91 10.03 22.26 0.22 -5.69 16 14 C -0.06 -2.13 9.49 22.47 0.21 -1.91 16 15 C -0.14 -6.23 5.47 -19.93 -0.11 -6.34 16 16 C -0.02 -0.72 5.28 -20.03 -0.11 -0.82 16 17 C -0.12 -5.87 8.70 22.25 0.19 -5.67 16 18 C -0.09 -3.87 10.04 22.20 0.22 -3.64 16 19 C -0.13 -5.05 6.37 -20.14 -0.13 -5.18 16 20 C -0.24 -6.62 11.08 23.51 0.26 -6.36 16 21 C 0.07 1.46 11.82 83.02 0.98 2.45 16 22 N -0.59 -13.69 6.07 -187.62 -1.14 -14.83 16 23 H 0.43 6.68 8.96 -92.71 -0.83 5.85 16 24 C 0.08 2.68 7.26 38.98 0.28 2.96 16 25 C -0.13 -4.69 9.52 22.60 0.22 -4.47 16 26 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 27 H 0.12 5.34 5.64 -2.91 -0.02 5.32 16 28 H 0.15 3.85 8.06 -2.91 -0.02 3.83 16 29 H 0.15 3.41 8.06 -2.91 -0.02 3.39 16 30 H 0.14 4.05 8.04 -2.91 -0.02 4.02 16 31 H 0.09 4.72 7.67 -2.91 -0.02 4.70 16 32 H 0.12 4.78 8.06 -2.91 -0.02 4.75 16 33 H 0.16 3.71 8.06 -2.91 -0.02 3.69 16 34 H 0.22 2.04 8.06 -2.91 -0.02 2.01 16 35 H 0.14 4.27 8.03 -2.91 -0.02 4.24 16 Total: -1.00 -77.58 306.65 5.25 -72.33 By element: Atomic # 1 Polarization: 31.14 SS G_CDS: 0.30 Total: 31.44 kcal Atomic # 6 Polarization: -69.67 SS G_CDS: 3.94 Total: -65.73 kcal Atomic # 7 Polarization: -70.12 SS G_CDS: -0.84 Total: -70.96 kcal Atomic # 8 Polarization: -12.65 SS G_CDS: -0.18 Total: -12.82 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.74 kcal Total: -77.58 5.25 -72.33 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240799219.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.640 kcal (2) G-P(sol) polarization free energy of solvation -77.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.329 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds