Wall clock time and date at job start Wed Apr 15 2020 11:44:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31086 * 1 3 3 Si 1.86790 * 120.00013 * 2 1 4 4 H 1.48508 * 109.47485 * 270.00020 * 3 2 1 5 5 H 1.48500 * 109.47613 * 29.99847 * 3 2 1 6 6 H 1.48499 * 109.47462 * 150.00079 * 3 2 1 7 7 C 1.39684 * 119.99710 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99400 * 179.97438 * 7 2 1 9 9 C 1.40959 * 119.99957 * 0.02562 * 7 2 1 10 10 C 1.38995 * 126.93549 * 0.02602 * 9 7 2 11 11 N 1.35594 * 109.24028 * 179.73742 * 10 9 7 12 12 H 0.96995 * 124.70469 * 180.02562 * 11 10 9 13 13 C 1.38178 * 110.58991 * 0.02562 * 11 10 9 14 14 C 1.39174 * 132.73105 * 180.02562 * 13 11 10 15 15 C 1.38006 * 120.24287 * 179.97438 * 14 13 11 16 16 C 1.38352 * 120.77638 * 0.02562 * 15 14 13 17 17 C 1.39166 * 120.10210 * 359.97438 * 16 15 14 18 18 C 1.48122 * 120.28468 * 180.02562 * 17 16 15 19 19 C 1.39402 * 120.16513 * 64.97317 * 18 17 16 20 20 C 1.37968 * 119.92522 * 179.97438 * 19 18 17 21 21 C 1.38413 * 120.25021 * 359.97438 * 20 19 18 22 22 C 1.38192 * 120.32290 * 0.02562 * 21 20 19 23 23 C 1.38560 * 120.06951 * 359.74226 * 22 21 20 24 24 O 1.35842 * 120.12245 * 180.27775 * 23 22 21 25 25 C 1.40213 * 107.89142 * 359.97438 * 13 11 10 26 26 H 0.96993 * 120.00259 * 0.02562 * 1 2 3 27 27 H 1.08001 * 125.37520 * 359.76843 * 10 9 7 28 28 H 1.07997 * 119.88046 * 359.96934 * 14 13 11 29 29 H 1.07998 * 119.61182 * 179.97438 * 15 14 13 30 30 H 1.08004 * 119.95197 * 179.97438 * 16 15 14 31 31 H 1.08000 * 120.03297 * 0.02562 * 19 18 17 32 32 H 1.08008 * 119.87676 * 179.97438 * 20 19 18 33 33 H 1.08003 * 119.83757 * 179.97438 * 21 20 19 34 34 H 1.08000 * 119.95919 * 180.02562 * 22 21 20 35 35 H 0.96699 * 114.00105 * 270.23025 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3109 0.0000 0.0000 3 14 2.2448 1.6176 0.0000 4 1 2.4924 2.0464 -1.4001 5 1 1.4423 2.6527 0.7000 6 1 3.5424 1.4402 0.7000 7 6 2.0092 -1.2097 0.0005 8 1 3.0892 -1.2097 0.0001 9 6 1.3044 -2.4304 0.0005 10 6 -0.0754 -2.5982 -0.0005 11 7 -0.3645 -3.9230 -0.0060 12 1 -1.2613 -4.2925 -0.0080 13 6 0.7957 -4.6735 -0.0082 14 6 1.0334 -6.0447 -0.0140 15 6 2.3268 -6.5260 -0.0154 16 6 3.4048 -5.6588 -0.0107 17 6 3.1941 -4.2832 -0.0049 18 6 4.3452 -3.3512 -0.0003 19 6 5.2110 -3.3019 -1.0918 20 6 6.2814 -2.4315 -1.0825 21 6 6.4993 -1.6057 0.0067 22 6 5.6475 -1.6460 1.0942 23 6 4.5656 -2.5117 1.0969 24 8 3.7244 -2.5482 2.1630 25 6 1.8821 -3.7871 -0.0045 26 1 -0.4850 0.8400 -0.0004 27 1 -0.8024 -1.7995 0.0022 28 1 0.2026 -6.7348 -0.0173 29 1 2.4995 -7.5921 -0.0195 30 1 4.4116 -6.0500 -0.0115 31 1 5.0435 -3.9439 -1.9440 32 1 6.9519 -2.3943 -1.9285 33 1 7.3395 -0.9272 0.0071 34 1 5.8228 -0.9988 1.9408 35 1 3.9835 -3.1807 2.8469 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241020667.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:28 Heat of formation + Delta-G solvation = 36.751612 kcal Electronic energy + Delta-G solvation = -21327.013777 eV Core-core repulsion = 18255.153451 eV Total energy + Delta-G solvation = -3071.860325 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.100 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.88808 -38.81895 -35.97929 -35.64722 -33.43813 -31.84201 -29.80675 -29.01448 -28.00944 -27.36772 -24.65812 -22.73526 -21.93994 -20.60258 -20.42762 -19.32049 -17.77346 -17.02513 -15.74014 -15.57118 -15.13732 -14.95455 -14.64546 -14.26624 -13.99906 -13.41178 -13.03996 -12.93337 -12.83161 -12.42610 -11.74834 -11.69034 -11.32199 -11.20995 -11.12623 -10.98574 -10.79955 -10.53995 -10.34948 -9.87312 -9.62573 -9.46982 -9.28975 -8.50905 -8.18622 -7.78200 -7.00667 -6.47741 -6.36708 -3.83570 1.65764 1.84698 2.27733 2.65383 3.16546 3.23559 3.30712 4.17417 4.20503 4.30550 4.62382 4.79883 4.84886 5.31844 5.42553 5.44284 5.72454 5.74171 5.81107 5.98491 6.02898 6.09170 6.37703 6.45362 6.50686 6.67644 6.78486 6.88248 6.94706 7.05289 7.22435 7.27530 7.32104 7.44305 7.55910 7.71033 7.95911 8.14011 8.38010 8.43193 8.80583 9.14797 9.28743 9.33241 10.61696 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.012643 B = 0.010573 C = 0.006412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2214.187616 B = 2647.604886 C = 4365.843662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C 0.052 3.948 3 Si 0.907 3.093 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.264 1.264 7 C -0.392 4.392 8 H 0.078 0.922 9 C 0.028 3.972 10 C -0.101 4.101 11 N -0.591 5.591 12 H 0.393 0.607 13 C 0.081 3.919 14 C -0.150 4.150 15 C -0.119 4.119 16 C -0.178 4.178 17 C 0.004 3.996 18 C -0.045 4.045 19 C -0.095 4.095 20 C -0.139 4.139 21 C -0.115 4.115 22 C -0.156 4.156 23 C 0.146 3.854 24 O -0.469 6.469 25 C -0.098 4.098 26 H 0.270 0.730 27 H 0.191 0.809 28 H 0.099 0.901 29 H 0.106 0.894 30 H 0.104 0.896 31 H 0.121 0.879 32 H 0.117 0.883 33 H 0.117 0.883 34 H 0.122 0.878 35 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.363 -5.838 0.956 9.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C -0.157 4.157 3 Si 0.734 3.266 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.189 1.189 7 C -0.425 4.425 8 H 0.096 0.904 9 C 0.023 3.977 10 C -0.225 4.225 11 N -0.192 5.192 12 H 0.226 0.774 13 C -0.031 4.031 14 C -0.172 4.172 15 C -0.138 4.138 16 C -0.198 4.198 17 C 0.003 3.997 18 C -0.046 4.046 19 C -0.114 4.114 20 C -0.157 4.157 21 C -0.133 4.133 22 C -0.174 4.174 23 C 0.101 3.899 24 O -0.277 6.277 25 C -0.105 4.105 26 H 0.080 0.920 27 H 0.207 0.793 28 H 0.117 0.883 29 H 0.124 0.876 30 H 0.122 0.878 31 H 0.139 0.861 32 H 0.135 0.865 33 H 0.135 0.865 34 H 0.140 0.860 35 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 6.749 -5.110 0.653 8.490 hybrid contribution 0.047 0.347 0.244 0.427 sum 6.796 -4.763 0.897 8.347 Atomic orbital electron populations 1.69463 1.07081 1.27452 1.42996 1.25602 0.94713 1.00481 0.94879 0.86287 0.80328 0.81384 0.78621 1.20178 1.20799 1.18867 1.18894 0.94319 0.88690 1.40611 0.90378 1.18000 0.90264 0.89217 1.00219 1.23403 0.98316 0.81836 1.18931 1.41560 1.05044 1.06750 1.65857 0.77433 1.18186 0.87346 0.91892 1.05631 1.19832 0.96483 0.91544 1.09344 1.20259 0.91813 0.97864 1.03881 1.20509 0.97580 0.91790 1.09954 1.17884 0.90405 0.91390 1.00007 1.19194 0.94611 0.96248 0.94536 1.21073 0.94144 0.98898 0.97237 1.20922 0.98635 0.97694 0.98459 1.20893 0.99373 0.99269 0.93746 1.21302 0.95223 1.00844 1.00072 1.18382 0.88534 0.94174 0.88809 1.85081 1.49589 1.63295 1.29730 1.19314 0.90293 0.94766 1.06086 0.91964 0.79271 0.88264 0.87564 0.87764 0.86102 0.86467 0.86517 0.86036 0.77180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.58 10.33 55.54 0.57 -22.01 16 2 C 0.05 1.39 5.49 -17.33 -0.10 1.30 16 3 Si 0.91 20.78 29.56 -169.99 -5.02 15.76 16 4 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 6 H -0.26 -6.04 7.11 56.52 0.40 -5.63 16 7 C -0.39 -10.88 8.25 -38.01 -0.31 -11.20 16 8 H 0.08 2.14 4.70 -52.48 -0.25 1.90 16 9 C 0.03 0.77 6.10 -104.83 -0.64 0.13 16 10 C -0.10 -2.62 10.89 -15.61 -0.17 -2.79 16 11 N -0.59 -13.16 5.99 -9.81 -0.06 -13.22 16 12 H 0.39 7.19 8.96 -40.82 -0.37 6.82 16 13 C 0.08 1.83 7.23 -83.91 -0.61 1.23 16 14 C -0.15 -2.90 10.06 -39.32 -0.40 -3.29 16 15 C -0.12 -2.13 10.00 -39.62 -0.40 -2.52 16 16 C -0.18 -3.34 9.73 -39.20 -0.38 -3.73 16 17 C 0.00 0.08 4.96 -104.74 -0.52 -0.44 16 18 C -0.05 -0.91 4.34 -104.78 -0.45 -1.37 16 19 C -0.10 -1.70 9.74 -39.25 -0.38 -2.08 16 20 C -0.14 -2.17 10.03 -39.62 -0.40 -2.57 16 21 C -0.11 -1.79 10.03 -39.53 -0.40 -2.18 16 22 C -0.16 -2.72 9.98 -39.48 -0.39 -3.11 16 23 C 0.15 2.88 4.31 -38.84 -0.17 2.71 16 24 O -0.47 -9.45 12.19 -19.25 -0.23 -9.69 16 25 C -0.10 -2.40 5.87 -104.64 -0.61 -3.02 16 26 H 0.27 6.76 8.30 -40.82 -0.34 6.42 16 27 H 0.19 5.10 5.68 -52.49 -0.30 4.80 16 28 H 0.10 1.63 8.06 -52.49 -0.42 1.21 16 29 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 30 H 0.10 1.71 8.06 -52.48 -0.42 1.28 16 31 H 0.12 1.98 8.06 -52.49 -0.42 1.56 16 32 H 0.12 1.47 8.06 -52.48 -0.42 1.05 16 33 H 0.12 1.47 8.06 -52.48 -0.42 1.04 16 34 H 0.12 1.91 8.06 -52.49 -0.42 1.49 16 35 H 0.37 5.53 9.06 45.56 0.41 5.95 16 LS Contribution 299.50 15.07 4.51 4.51 Total: -1.00 -31.20 299.50 -9.15 -40.34 By element: Atomic # 1 Polarization: 19.84 SS G_CDS: -2.59 Total: 17.25 kcal Atomic # 6 Polarization: -26.62 SS G_CDS: -6.32 Total: -32.94 kcal Atomic # 7 Polarization: -35.75 SS G_CDS: 0.52 Total: -35.23 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: -0.23 Total: -9.69 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -31.20 -9.15 -40.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241020667.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.094 kcal (2) G-P(sol) polarization free energy of solvation -31.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds