Wall clock time and date at job start Wed Apr 15 2020 11:44:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31086 * 1 3 3 Si 1.86790 * 120.00013 * 2 1 4 4 H 1.48508 * 109.47485 * 270.00020 * 3 2 1 5 5 H 1.48500 * 109.47613 * 29.99847 * 3 2 1 6 6 H 1.48499 * 109.47462 * 150.00079 * 3 2 1 7 7 C 1.39684 * 119.99710 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99400 * 179.97438 * 7 2 1 9 9 C 1.40959 * 119.99957 * 0.02562 * 7 2 1 10 10 C 1.38995 * 126.93549 * 0.02602 * 9 7 2 11 11 N 1.35594 * 109.24028 * 179.73742 * 10 9 7 12 12 H 0.96995 * 124.70469 * 180.02562 * 11 10 9 13 13 C 1.38178 * 110.58991 * 0.02562 * 11 10 9 14 14 C 1.39174 * 132.73105 * 180.02562 * 13 11 10 15 15 C 1.38006 * 120.24287 * 179.97438 * 14 13 11 16 16 C 1.38352 * 120.77638 * 0.02562 * 15 14 13 17 17 C 1.39166 * 120.10210 * 359.97438 * 16 15 14 18 18 C 1.48122 * 120.28468 * 180.02562 * 17 16 15 19 19 C 1.39402 * 120.16513 * 64.97317 * 18 17 16 20 20 C 1.37968 * 119.92522 * 179.97438 * 19 18 17 21 21 C 1.38413 * 120.25021 * 359.97438 * 20 19 18 22 22 C 1.38192 * 120.32290 * 0.02562 * 21 20 19 23 23 C 1.38560 * 120.06951 * 359.74226 * 22 21 20 24 24 O 1.35842 * 120.12245 * 180.27775 * 23 22 21 25 25 C 1.40213 * 107.89142 * 359.97438 * 13 11 10 26 26 H 0.96993 * 120.00259 * 0.02562 * 1 2 3 27 27 H 1.08001 * 125.37520 * 359.76843 * 10 9 7 28 28 H 1.07997 * 119.88046 * 359.96934 * 14 13 11 29 29 H 1.07998 * 119.61182 * 179.97438 * 15 14 13 30 30 H 1.08004 * 119.95197 * 179.97438 * 16 15 14 31 31 H 1.08000 * 120.03297 * 0.02562 * 19 18 17 32 32 H 1.08008 * 119.87676 * 179.97438 * 20 19 18 33 33 H 1.08003 * 119.83757 * 179.97438 * 21 20 19 34 34 H 1.08000 * 119.95919 * 180.02562 * 22 21 20 35 35 H 0.96699 * 114.00105 * 270.23025 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3109 0.0000 0.0000 3 14 2.2448 1.6176 0.0000 4 1 2.4924 2.0464 -1.4001 5 1 1.4423 2.6527 0.7000 6 1 3.5424 1.4402 0.7000 7 6 2.0092 -1.2097 0.0005 8 1 3.0892 -1.2097 0.0001 9 6 1.3044 -2.4304 0.0005 10 6 -0.0754 -2.5982 -0.0005 11 7 -0.3645 -3.9230 -0.0060 12 1 -1.2613 -4.2925 -0.0080 13 6 0.7957 -4.6735 -0.0082 14 6 1.0334 -6.0447 -0.0140 15 6 2.3268 -6.5260 -0.0154 16 6 3.4048 -5.6588 -0.0107 17 6 3.1941 -4.2832 -0.0049 18 6 4.3452 -3.3512 -0.0003 19 6 5.2110 -3.3019 -1.0918 20 6 6.2814 -2.4315 -1.0825 21 6 6.4993 -1.6057 0.0067 22 6 5.6475 -1.6460 1.0942 23 6 4.5656 -2.5117 1.0969 24 8 3.7244 -2.5482 2.1630 25 6 1.8821 -3.7871 -0.0045 26 1 -0.4850 0.8400 -0.0004 27 1 -0.8024 -1.7995 0.0022 28 1 0.2026 -6.7348 -0.0173 29 1 2.4995 -7.5921 -0.0195 30 1 4.4116 -6.0500 -0.0115 31 1 5.0435 -3.9439 -1.9440 32 1 6.9519 -2.3943 -1.9285 33 1 7.3395 -0.9272 0.0071 34 1 5.8228 -0.9988 1.9408 35 1 3.9835 -3.1807 2.8469 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241020667.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:28 Heat of formation + Delta-G solvation = 17.774457 kcal Electronic energy + Delta-G solvation = -21327.836688 eV Core-core repulsion = 18255.153451 eV Total energy + Delta-G solvation = -3072.683237 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.100 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.50236 -40.27172 -37.46034 -37.17555 -35.33906 -33.35665 -31.37305 -30.50800 -29.59328 -29.03349 -26.53539 -24.19382 -23.30862 -22.14367 -22.05275 -21.15846 -19.23762 -18.61005 -17.63140 -17.14386 -16.63871 -16.33558 -16.14791 -15.94055 -15.51137 -14.84381 -14.68724 -14.52448 -14.30692 -14.23882 -13.20914 -13.09007 -12.95266 -12.87615 -12.80401 -12.51399 -12.46012 -12.12307 -11.91834 -11.53278 -11.47244 -11.20218 -11.01150 -10.07686 -9.61835 -9.22369 -8.67538 -8.31889 -8.27969 -5.83594 0.23848 0.52776 0.76919 1.06604 1.36091 1.36805 1.49680 2.32373 2.37074 2.85036 2.97130 3.17638 3.50680 3.77581 3.92104 4.15089 4.26966 4.34037 4.50206 4.59019 4.67263 4.71762 4.88739 5.05054 5.06635 5.17076 5.31896 5.41504 5.47016 5.58249 5.65647 5.68236 5.76827 5.90181 6.04326 6.09710 6.12136 6.34593 6.62874 6.91212 7.08195 7.25703 7.34228 7.48811 8.67224 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.012643 B = 0.010573 C = 0.006412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2214.187616 B = 2647.604886 C = 4365.843662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.004 3.996 3 Si 0.966 3.034 4 H -0.270 1.270 5 H -0.274 1.274 6 H -0.264 1.264 7 C -0.415 4.415 8 H 0.074 0.926 9 C -0.007 4.007 10 C -0.121 4.121 11 N -0.589 5.589 12 H 0.408 0.592 13 C 0.068 3.932 14 C -0.154 4.154 15 C -0.104 4.104 16 C -0.171 4.171 17 C -0.009 4.009 18 C -0.075 4.075 19 C -0.106 4.106 20 C -0.134 4.134 21 C -0.109 4.109 22 C -0.169 4.169 23 C 0.125 3.875 24 O -0.496 6.496 25 C -0.136 4.136 26 H 0.272 0.728 27 H 0.174 0.826 28 H 0.132 0.868 29 H 0.152 0.848 30 H 0.133 0.867 31 H 0.130 0.870 32 H 0.154 0.846 33 H 0.153 0.847 34 H 0.132 0.868 35 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.630 -7.242 0.407 12.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.201 4.201 3 Si 0.790 3.210 4 H -0.195 1.195 5 H -0.199 1.199 6 H -0.188 1.188 7 C -0.449 4.449 8 H 0.092 0.908 9 C -0.012 4.012 10 C -0.245 4.245 11 N -0.193 5.193 12 H 0.244 0.756 13 C -0.042 4.042 14 C -0.176 4.176 15 C -0.123 4.123 16 C -0.191 4.191 17 C -0.009 4.009 18 C -0.075 4.075 19 C -0.124 4.124 20 C -0.152 4.152 21 C -0.127 4.127 22 C -0.187 4.187 23 C 0.081 3.919 24 O -0.306 6.306 25 C -0.142 4.142 26 H 0.083 0.917 27 H 0.191 0.809 28 H 0.149 0.851 29 H 0.169 0.831 30 H 0.151 0.849 31 H 0.148 0.852 32 H 0.171 0.829 33 H 0.171 0.829 34 H 0.150 0.850 35 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 9.009 -6.555 0.109 11.142 hybrid contribution -0.551 0.574 0.422 0.900 sum 8.458 -5.981 0.531 10.373 Atomic orbital electron populations 1.69572 1.08034 1.28114 1.44021 1.26384 0.95602 1.03359 0.94751 0.85391 0.79077 0.77758 0.78761 1.19539 1.19947 1.18817 1.19084 0.94282 0.89691 1.41796 0.90811 1.18375 0.91150 0.90674 1.01012 1.23153 0.97998 0.83214 1.20173 1.41349 1.06027 1.05547 1.66368 0.75629 1.18660 0.86808 0.93284 1.05478 1.20254 0.98430 0.90343 1.08561 1.20826 0.90732 1.00050 1.00718 1.20942 0.99480 0.90799 1.07888 1.18208 0.89906 0.93029 0.99766 1.19335 0.95151 0.97260 0.95767 1.21310 0.94539 0.99779 0.96811 1.21338 0.98108 0.96278 0.99446 1.21345 0.99563 0.99109 0.92676 1.21557 0.95114 1.00631 1.01412 1.18631 0.89331 0.95168 0.88780 1.85027 1.50767 1.64161 1.30620 1.19578 0.92357 0.94035 1.08275 0.91737 0.80907 0.85055 0.83055 0.84932 0.85233 0.82851 0.82921 0.84971 0.75450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -48.67 10.33 21.79 0.23 -48.45 16 2 C 0.00 0.24 5.49 85.15 0.47 0.71 16 3 Si 0.97 43.55 29.56 68.60 2.03 45.57 16 4 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 5 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 6 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 7 C -0.42 -23.99 8.25 23.29 0.19 -23.80 16 8 H 0.07 4.20 4.70 -2.91 -0.01 4.18 16 9 C -0.01 -0.38 6.10 -20.00 -0.12 -0.50 16 10 C -0.12 -6.61 10.89 84.29 0.92 -5.69 16 11 N -0.59 -26.94 5.99 -184.94 -1.11 -28.04 16 12 H 0.41 15.23 8.96 -92.71 -0.83 14.40 16 13 C 0.07 3.09 7.23 38.85 0.28 3.37 16 14 C -0.15 -5.56 10.06 22.44 0.23 -5.33 16 15 C -0.10 -3.33 10.00 22.24 0.22 -3.11 16 16 C -0.17 -5.99 9.73 22.52 0.22 -5.77 16 17 C -0.01 -0.37 4.96 -19.94 -0.10 -0.47 16 18 C -0.07 -2.99 4.34 -19.97 -0.09 -3.08 16 19 C -0.11 -3.63 9.74 22.49 0.22 -3.41 16 20 C -0.13 -3.79 10.03 22.25 0.22 -3.57 16 21 C -0.11 -3.10 10.03 22.30 0.22 -2.87 16 22 C -0.17 -5.71 9.98 22.34 0.22 -5.49 16 23 C 0.13 4.98 4.31 22.75 0.10 5.08 16 24 O -0.50 -20.69 12.19 -91.78 -1.12 -21.81 16 25 C -0.14 -6.82 5.87 -19.88 -0.12 -6.94 16 26 H 0.27 14.20 8.30 -92.71 -0.77 13.43 16 27 H 0.17 9.93 5.68 -2.91 -0.02 9.91 16 28 H 0.13 3.84 8.06 -2.91 -0.02 3.81 16 29 H 0.15 3.51 8.06 -2.91 -0.02 3.49 16 30 H 0.13 3.85 8.06 -2.91 -0.02 3.83 16 31 H 0.13 4.03 8.06 -2.91 -0.02 4.01 16 32 H 0.15 3.17 8.06 -2.91 -0.02 3.15 16 33 H 0.15 3.18 8.06 -2.91 -0.02 3.16 16 34 H 0.13 4.04 8.06 -2.91 -0.02 4.02 16 35 H 0.39 12.07 9.06 -74.06 -0.67 11.40 16 Total: -1.00 -70.77 299.50 2.77 -68.00 By element: Atomic # 1 Polarization: 45.94 SS G_CDS: -0.35 Total: 45.59 kcal Atomic # 6 Polarization: -63.95 SS G_CDS: 3.09 Total: -60.86 kcal Atomic # 7 Polarization: -75.61 SS G_CDS: -0.88 Total: -76.49 kcal Atomic # 8 Polarization: -20.69 SS G_CDS: -1.12 Total: -21.81 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.57 kcal Total: -70.77 2.77 -68.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241020667.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.771 kcal (2) G-P(sol) polarization free energy of solvation -70.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds