Wall clock time and date at job start Wed Apr 15 2020 11:44:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.43192 * 179.97438 * 2 1 4 4 C 1.39719 * 120.19081 * 316.24956 * 3 2 1 5 5 C 1.37829 * 119.89838 * 180.02562 * 4 3 2 6 6 C 1.38513 * 120.29875 * 359.97438 * 5 4 3 7 7 C 1.38114 * 120.38832 * 359.72647 * 6 5 4 8 8 C 1.38644 * 120.09171 * 0.55380 * 7 6 5 9 9 O 1.35705 * 120.14711 * 179.72774 * 8 7 6 10 10 C 1.42900 * 117.00260 * 7.10246 * 9 8 7 11 11 H 1.08995 * 109.47054 * 37.40553 * 10 9 8 12 12 C 1.50710 * 109.47072 * 277.41485 * 10 9 8 13 13 H 1.07996 * 120.00029 * 125.60442 * 12 10 9 14 14 C 1.37880 * 119.99627 * 305.60383 * 12 10 9 15 15 N 1.31512 * 120.00084 * 9.54499 * 14 12 10 16 16 Si 1.86799 * 119.99609 * 189.54493 * 14 12 10 17 17 H 1.48500 * 109.47415 * 90.00227 * 16 14 12 18 18 H 1.48498 * 109.46895 * 209.99991 * 16 14 12 19 19 H 1.48503 * 109.47082 * 329.99478 * 16 14 12 20 20 C 1.50699 * 109.47320 * 157.41367 * 10 9 8 21 21 C 1.38236 * 119.99978 * 29.70356 * 20 10 9 22 22 C 1.38231 * 120.00054 * 179.97438 * 21 20 10 23 23 C 1.38234 * 119.99849 * 359.97438 * 22 21 20 24 24 C 1.38242 * 120.00190 * 0.06913 * 23 22 21 25 25 C 1.38231 * 119.99906 * 359.89112 * 24 23 22 26 26 H 1.07995 * 120.04970 * 0.04387 * 4 3 2 27 27 H 1.07995 * 119.84836 * 179.97438 * 5 4 3 28 28 H 1.07994 * 119.80545 * 180.02562 * 6 5 4 29 29 H 1.08001 * 119.95381 * 180.30030 * 7 6 5 30 30 H 0.96999 * 119.99806 * 180.02562 * 15 14 12 31 31 H 1.07998 * 119.99959 * 359.97438 * 21 20 10 32 32 H 1.08003 * 120.00254 * 179.72179 * 22 21 20 33 33 H 1.08002 * 120.00263 * 179.97438 * 23 22 21 34 34 H 1.08004 * 119.99771 * 179.97438 * 24 23 22 35 35 H 1.08001 * 120.00110 * 180.11408 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2710 -0.8714 0.8351 5 6 4.6493 -0.8653 0.8306 6 6 5.3416 0.0014 0.0012 7 6 4.6589 0.8642 -0.8337 8 6 3.2725 0.8758 -0.8380 9 8 2.6006 1.7270 -1.6539 10 6 3.3765 2.4728 -2.5940 11 1 4.1840 1.8480 -2.9755 12 6 3.9582 3.6860 -1.9149 13 1 5.0227 3.8651 -1.9482 14 6 3.1313 4.5673 -1.2512 15 7 1.8692 4.2587 -1.0478 16 14 3.8037 6.1998 -0.6409 17 1 3.6394 7.2293 -1.6984 18 1 3.0615 6.6171 0.5757 19 1 5.2448 6.0506 -0.3147 20 6 2.4968 2.9102 -3.7367 21 6 1.1509 3.1425 -3.5232 22 6 0.3441 3.5443 -4.5713 23 6 0.8833 3.7141 -5.8328 24 6 2.2290 3.4809 -6.0465 25 6 3.0360 3.0800 -4.9982 26 1 2.7352 -1.5494 1.4829 27 1 5.1918 -1.5395 1.4768 28 1 6.4215 -0.0008 0.0038 29 1 5.2058 1.5337 -1.4811 30 1 1.2874 4.8789 -0.5811 31 1 0.7298 3.0102 -2.5376 32 1 -0.7083 3.7214 -4.4055 33 1 0.2529 4.0276 -6.6518 34 1 2.6501 3.6133 -7.0322 35 1 4.0877 2.8996 -5.1648 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055021578.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:12 Heat of formation + Delta-G solvation = 45.496474 kcal Electronic energy + Delta-G solvation = -20867.894247 eV Core-core repulsion = 17796.413127 eV Total energy + Delta-G solvation = -3071.481120 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.100 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.57133 -38.28535 -36.59860 -35.62209 -33.10908 -31.06652 -30.66083 -29.97363 -29.13541 -27.08509 -23.58299 -23.26374 -21.91271 -21.45246 -20.17572 -18.52126 -17.31053 -16.28892 -16.00959 -15.18954 -15.05646 -14.53588 -14.18520 -13.99081 -13.82296 -13.52029 -13.09769 -12.86035 -12.49866 -12.46767 -12.08631 -12.01162 -11.87925 -11.73020 -11.25861 -11.11315 -11.03397 -10.74908 -10.58072 -10.53302 -10.18844 -9.63143 -9.43681 -8.79444 -8.50822 -8.02598 -7.72448 -7.40086 -6.26075 -4.47810 1.37109 2.00859 2.24626 2.36009 3.16845 3.25266 3.25609 3.40267 3.60475 4.17809 4.21847 4.47465 4.63205 4.75746 5.04130 5.29338 5.44101 5.64507 5.65751 5.73581 5.81099 5.89969 6.06585 6.13313 6.28219 6.32392 6.45850 6.60542 6.67922 6.82592 6.87233 6.93765 7.02934 7.23528 7.30412 7.45807 7.58542 7.71119 7.75940 7.98666 8.19938 8.34556 8.70197 9.26460 10.71012 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.013444 B = 0.007424 C = 0.006198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2082.275748 B = 3770.879122 C = 4516.565159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C 0.280 3.720 3 C -0.099 4.099 4 C -0.039 4.039 5 C -0.190 4.190 6 C -0.057 4.057 7 C -0.205 4.205 8 C 0.227 3.773 9 O -0.276 6.276 10 C 0.238 3.762 11 H 0.039 0.961 12 C -0.559 4.559 13 H 0.071 0.929 14 C 0.088 3.912 15 N -0.834 5.834 16 Si 0.891 3.109 17 H -0.277 1.277 18 H -0.284 1.284 19 H -0.271 1.271 20 C -0.038 4.038 21 C -0.069 4.069 22 C -0.140 4.140 23 C -0.145 4.145 24 C -0.138 4.138 25 C -0.124 4.124 26 H 0.125 0.875 27 H 0.121 0.879 28 H 0.120 0.880 29 H 0.144 0.856 30 H 0.266 0.734 31 H 0.148 0.852 32 H 0.106 0.894 33 H 0.104 0.896 34 H 0.108 0.892 35 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.301 -5.864 -1.545 8.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.122 5.122 2 C -0.034 4.034 3 C -0.104 4.104 4 C -0.059 4.059 5 C -0.208 4.208 6 C -0.076 4.076 7 C -0.224 4.224 8 C 0.174 3.826 9 O -0.185 6.185 10 C 0.185 3.815 11 H 0.057 0.943 12 C -0.595 4.595 13 H 0.089 0.911 14 C -0.121 4.121 15 N -0.467 5.467 16 Si 0.718 3.282 17 H -0.203 1.203 18 H -0.210 1.210 19 H -0.195 1.195 20 C -0.039 4.039 21 C -0.088 4.088 22 C -0.158 4.158 23 C -0.163 4.163 24 C -0.156 4.156 25 C -0.142 4.142 26 H 0.143 0.857 27 H 0.139 0.861 28 H 0.138 0.862 29 H 0.162 0.838 30 H 0.077 0.923 31 H 0.165 0.835 32 H 0.124 0.876 33 H 0.123 0.877 34 H 0.126 0.874 35 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 3.134 -5.725 -1.510 6.699 hybrid contribution 0.944 1.381 0.303 1.700 sum 4.079 -4.344 -1.206 6.080 Atomic orbital electron populations 1.81089 1.12230 1.09523 1.09388 1.25371 0.92413 0.92674 0.92920 1.15386 0.84567 1.04338 1.06061 1.20787 0.94138 0.95623 0.95369 1.20696 0.93458 1.03121 1.03545 1.21101 0.99585 0.93303 0.93562 1.21423 0.93153 1.03198 1.04580 1.19038 0.90484 0.85354 0.87758 1.86277 1.37976 1.49069 1.45176 1.19078 0.87579 0.90464 0.84382 0.94304 1.21276 0.94256 1.08003 1.35955 0.91107 1.24986 0.94717 0.97973 0.94459 1.69974 1.04986 1.35057 1.36680 0.86597 0.79399 0.83758 0.78427 1.20290 1.20961 1.19516 1.19892 0.94164 0.97210 0.92594 1.21491 0.93279 0.94704 0.99284 1.21144 0.99291 1.01892 0.93481 1.20874 0.95316 1.03280 0.96832 1.20792 0.94074 1.02629 0.98103 1.20737 0.99023 1.02032 0.92444 0.85700 0.86120 0.86163 0.83823 0.92345 0.83455 0.87593 0.87750 0.87436 0.87135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -9.73 18.54 41.84 0.78 -8.96 16 2 C 0.28 5.73 14.87 -22.47 -0.33 5.39 16 3 C -0.10 -1.83 5.75 -106.70 -0.61 -2.44 16 4 C -0.04 -0.56 9.76 -39.18 -0.38 -0.94 16 5 C -0.19 -2.47 10.02 -39.63 -0.40 -2.86 16 6 C -0.06 -0.79 10.03 -39.53 -0.40 -1.19 16 7 C -0.20 -3.58 8.63 -39.48 -0.34 -3.92 16 8 C 0.23 4.57 6.58 -38.71 -0.25 4.32 16 9 O -0.28 -6.39 7.06 -18.82 -0.13 -6.52 16 10 C 0.24 5.36 2.10 -29.03 -0.06 5.30 16 11 H 0.04 0.80 6.50 -51.93 -0.34 0.46 16 12 C -0.56 -13.49 7.61 -34.43 -0.26 -13.75 16 13 H 0.07 1.67 7.83 -52.49 -0.41 1.25 16 14 C 0.09 2.22 5.22 -17.82 -0.09 2.12 16 15 N -0.83 -21.79 9.57 55.43 0.53 -21.26 16 16 Si 0.89 19.90 29.55 -169.99 -5.02 14.88 16 17 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 18 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 19 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 20 C -0.04 -0.85 4.83 -104.62 -0.51 -1.36 16 21 C -0.07 -1.59 8.12 -39.58 -0.32 -1.91 16 22 C -0.14 -2.82 10.05 -39.59 -0.40 -3.22 16 23 C -0.14 -2.62 10.05 -39.58 -0.40 -3.02 16 24 C -0.14 -2.47 10.05 -39.58 -0.40 -2.86 16 25 C -0.12 -2.44 9.70 -39.58 -0.38 -2.83 16 26 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 27 H 0.12 1.20 8.06 -52.49 -0.42 0.77 16 28 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 29 H 0.14 2.55 5.62 -52.49 -0.29 2.26 16 30 H 0.27 6.81 8.31 -40.82 -0.34 6.48 16 31 H 0.15 3.76 5.98 -52.49 -0.31 3.44 16 32 H 0.11 1.92 8.06 -52.48 -0.42 1.50 16 33 H 0.10 1.58 8.06 -52.49 -0.42 1.16 16 34 H 0.11 1.59 8.06 -52.48 -0.42 1.16 16 35 H 0.11 1.93 8.06 -52.49 -0.42 1.51 16 LS Contribution 310.04 15.07 4.67 4.67 Total: -1.00 -27.62 310.04 -8.17 -35.78 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -3.45 Total: 4.57 kcal Atomic # 6 Polarization: -17.63 SS G_CDS: -5.54 Total: -23.17 kcal Atomic # 7 Polarization: -31.53 SS G_CDS: 1.31 Total: -30.22 kcal Atomic # 8 Polarization: -6.39 SS G_CDS: -0.13 Total: -6.52 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.02 Total: 14.88 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -27.62 -8.17 -35.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055021578.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.281 kcal (2) G-P(sol) polarization free energy of solvation -27.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds