Wall clock time and date at job start Wed Apr 15 2020 11:44:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.43192 * 179.97438 * 2 1 4 4 C 1.39719 * 120.19081 * 316.24956 * 3 2 1 5 5 C 1.37829 * 119.89838 * 180.02562 * 4 3 2 6 6 C 1.38513 * 120.29875 * 359.97438 * 5 4 3 7 7 C 1.38114 * 120.38832 * 359.72647 * 6 5 4 8 8 C 1.38644 * 120.09171 * 0.55380 * 7 6 5 9 9 O 1.35705 * 120.14711 * 179.72774 * 8 7 6 10 10 C 1.42900 * 117.00260 * 7.10246 * 9 8 7 11 11 H 1.08995 * 109.47054 * 37.40553 * 10 9 8 12 12 C 1.50710 * 109.47072 * 277.41485 * 10 9 8 13 13 H 1.07996 * 120.00029 * 125.60442 * 12 10 9 14 14 C 1.37880 * 119.99627 * 305.60383 * 12 10 9 15 15 N 1.31512 * 120.00084 * 9.54499 * 14 12 10 16 16 Si 1.86799 * 119.99609 * 189.54493 * 14 12 10 17 17 H 1.48500 * 109.47415 * 90.00227 * 16 14 12 18 18 H 1.48498 * 109.46895 * 209.99991 * 16 14 12 19 19 H 1.48503 * 109.47082 * 329.99478 * 16 14 12 20 20 C 1.50699 * 109.47320 * 157.41367 * 10 9 8 21 21 C 1.38236 * 119.99978 * 29.70356 * 20 10 9 22 22 C 1.38231 * 120.00054 * 179.97438 * 21 20 10 23 23 C 1.38234 * 119.99849 * 359.97438 * 22 21 20 24 24 C 1.38242 * 120.00190 * 0.06913 * 23 22 21 25 25 C 1.38231 * 119.99906 * 359.89112 * 24 23 22 26 26 H 1.07995 * 120.04970 * 0.04387 * 4 3 2 27 27 H 1.07995 * 119.84836 * 179.97438 * 5 4 3 28 28 H 1.07994 * 119.80545 * 180.02562 * 6 5 4 29 29 H 1.08001 * 119.95381 * 180.30030 * 7 6 5 30 30 H 0.96999 * 119.99806 * 180.02562 * 15 14 12 31 31 H 1.07998 * 119.99959 * 359.97438 * 21 20 10 32 32 H 1.08003 * 120.00254 * 179.72179 * 22 21 20 33 33 H 1.08002 * 120.00263 * 179.97438 * 23 22 21 34 34 H 1.08004 * 119.99771 * 179.97438 * 24 23 22 35 35 H 1.08001 * 120.00110 * 180.11408 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2710 -0.8714 0.8351 5 6 4.6493 -0.8653 0.8306 6 6 5.3416 0.0014 0.0012 7 6 4.6589 0.8642 -0.8337 8 6 3.2725 0.8758 -0.8380 9 8 2.6006 1.7270 -1.6539 10 6 3.3765 2.4728 -2.5940 11 1 4.1840 1.8480 -2.9755 12 6 3.9582 3.6860 -1.9149 13 1 5.0227 3.8651 -1.9482 14 6 3.1313 4.5673 -1.2512 15 7 1.8692 4.2587 -1.0478 16 14 3.8037 6.1998 -0.6409 17 1 3.6394 7.2293 -1.6984 18 1 3.0615 6.6171 0.5757 19 1 5.2448 6.0506 -0.3147 20 6 2.4968 2.9102 -3.7367 21 6 1.1509 3.1425 -3.5232 22 6 0.3441 3.5443 -4.5713 23 6 0.8833 3.7141 -5.8328 24 6 2.2290 3.4809 -6.0465 25 6 3.0360 3.0800 -4.9982 26 1 2.7352 -1.5494 1.4829 27 1 5.1918 -1.5395 1.4768 28 1 6.4215 -0.0008 0.0038 29 1 5.2058 1.5337 -1.4811 30 1 1.2874 4.8789 -0.5811 31 1 0.7298 3.0102 -2.5376 32 1 -0.7083 3.7214 -4.4055 33 1 0.2529 4.0276 -6.6518 34 1 2.6501 3.6133 -7.0322 35 1 4.0877 2.8996 -5.1648 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000055021578.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:11 Heat of formation + Delta-G solvation = 32.855205 kcal Electronic energy + Delta-G solvation = -20868.442414 eV Core-core repulsion = 17796.413127 eV Total energy + Delta-G solvation = -3072.029286 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.100 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.01239 -39.76685 -38.08518 -37.18999 -34.87139 -32.64018 -32.01804 -31.50140 -30.46883 -28.79839 -25.27377 -24.58689 -23.37183 -22.90746 -21.71450 -19.95315 -18.91199 -17.82143 -17.52340 -16.85749 -16.55483 -15.81753 -15.74194 -15.59101 -15.23685 -14.94544 -14.73770 -14.36077 -14.02000 -13.94963 -13.72679 -13.55806 -13.44492 -13.30205 -12.86495 -12.74171 -12.42771 -12.27844 -12.16815 -11.92815 -11.76669 -11.24671 -11.07148 -10.66284 -9.78491 -9.57079 -9.30693 -8.82331 -8.10490 -6.37207 0.06221 0.69285 0.75381 0.81810 1.37457 1.41015 1.47553 1.80668 2.14040 2.36375 2.69983 3.10186 3.16979 3.22241 3.22567 4.14439 4.22728 4.27575 4.29988 4.39436 4.50953 4.62226 4.63556 4.68387 4.79820 4.96789 5.04455 5.11136 5.32936 5.47747 5.51388 5.59279 5.62878 5.70690 5.76910 5.89895 5.95115 6.04099 6.17709 6.39237 6.55140 6.65026 7.05989 7.39992 8.82857 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.013444 B = 0.007424 C = 0.006198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2082.275748 B = 3770.879122 C = 4516.565159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.487 5.487 2 C 0.289 3.711 3 C -0.124 4.124 4 C -0.030 4.030 5 C -0.170 4.170 6 C -0.042 4.042 7 C -0.221 4.221 8 C 0.188 3.812 9 O -0.305 6.305 10 C 0.240 3.760 11 H 0.048 0.952 12 C -0.560 4.560 13 H 0.072 0.928 14 C 0.047 3.953 15 N -0.860 5.860 16 Si 0.940 3.060 17 H -0.281 1.281 18 H -0.291 1.291 19 H -0.260 1.260 20 C -0.065 4.065 21 C -0.096 4.096 22 C -0.153 4.153 23 C -0.139 4.139 24 C -0.130 4.130 25 C -0.132 4.132 26 H 0.155 0.845 27 H 0.169 0.831 28 H 0.159 0.841 29 H 0.134 0.866 30 H 0.257 0.743 31 H 0.110 0.890 32 H 0.116 0.884 33 H 0.142 0.858 34 H 0.149 0.851 35 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.778 -6.814 -2.048 10.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.165 5.165 2 C -0.023 4.023 3 C -0.128 4.128 4 C -0.050 4.050 5 C -0.187 4.187 6 C -0.060 4.060 7 C -0.239 4.239 8 C 0.136 3.864 9 O -0.216 6.216 10 C 0.186 3.814 11 H 0.066 0.934 12 C -0.597 4.597 13 H 0.090 0.910 14 C -0.159 4.159 15 N -0.494 5.494 16 Si 0.766 3.234 17 H -0.207 1.207 18 H -0.218 1.218 19 H -0.184 1.184 20 C -0.066 4.066 21 C -0.114 4.114 22 C -0.171 4.171 23 C -0.157 4.157 24 C -0.148 4.148 25 C -0.150 4.150 26 H 0.173 0.827 27 H 0.186 0.814 28 H 0.177 0.823 29 H 0.152 0.848 30 H 0.066 0.934 31 H 0.128 0.872 32 H 0.134 0.866 33 H 0.160 0.840 34 H 0.167 0.833 35 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 5.633 -6.689 -2.007 8.973 hybrid contribution 0.273 1.543 0.458 1.632 sum 5.906 -5.147 -1.549 7.986 Atomic orbital electron populations 1.81061 1.13403 1.11084 1.10969 1.25911 0.93070 0.91556 0.91810 1.15741 0.83505 1.05924 1.07660 1.21216 0.95135 0.94472 0.94157 1.21244 0.92730 1.02291 1.02480 1.21569 1.01511 0.91402 0.91549 1.21456 0.92032 1.04534 1.05917 1.19476 0.91895 0.86251 0.88742 1.86215 1.38764 1.50375 1.46246 1.19033 0.87903 0.90017 0.84452 0.93420 1.21511 0.94178 1.08509 1.35461 0.91012 1.25593 0.94914 1.00334 0.95096 1.70169 1.05875 1.35367 1.38016 0.85836 0.79226 0.80889 0.77417 1.20669 1.21764 1.18350 1.20104 0.94133 0.98400 0.93942 1.21264 0.94329 0.97244 0.98608 1.21348 0.99744 1.01978 0.94017 1.21286 0.96076 1.01672 0.96660 1.21274 0.93786 1.00438 0.99300 1.21056 1.00358 1.01752 0.91866 0.82715 0.81395 0.82330 0.84822 0.93400 0.87220 0.86575 0.84019 0.83340 0.85187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -22.44 18.54 19.00 0.35 -22.09 16 2 C 0.29 12.34 14.87 88.33 1.31 13.66 16 3 C -0.12 -4.60 5.75 -21.21 -0.12 -4.72 16 4 C -0.03 -0.78 9.76 22.53 0.22 -0.56 16 5 C -0.17 -3.63 10.02 22.24 0.22 -3.40 16 6 C -0.04 -1.02 10.03 22.31 0.22 -0.80 16 7 C -0.22 -7.57 8.63 22.34 0.19 -7.38 16 8 C 0.19 7.79 6.58 22.83 0.15 7.94 16 9 O -0.31 -14.95 7.06 -90.26 -0.64 -15.59 16 10 C 0.24 11.19 2.10 29.10 0.06 11.26 16 11 H 0.05 2.03 6.50 -2.39 -0.02 2.02 16 12 C -0.56 -27.74 7.61 25.60 0.19 -27.55 16 13 H 0.07 3.42 7.83 -2.91 -0.02 3.39 16 14 C 0.05 2.42 5.22 84.66 0.44 2.87 16 15 N -0.86 -47.56 9.57 21.45 0.21 -47.35 16 16 Si 0.94 41.73 29.55 68.60 2.03 43.76 16 17 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 18 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 19 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 20 C -0.07 -3.01 4.83 -19.87 -0.10 -3.11 16 21 C -0.10 -4.63 8.12 22.27 0.18 -4.45 16 22 C -0.15 -6.24 10.05 22.27 0.22 -6.02 16 23 C -0.14 -4.75 10.05 22.27 0.22 -4.53 16 24 C -0.13 -4.32 10.05 22.27 0.22 -4.09 16 25 C -0.13 -5.09 9.70 22.27 0.22 -4.88 16 26 H 0.16 3.13 8.06 -2.91 -0.02 3.10 16 27 H 0.17 2.15 8.06 -2.91 -0.02 2.13 16 28 H 0.16 2.69 8.06 -2.91 -0.02 2.66 16 29 H 0.13 4.77 5.62 -2.91 -0.02 4.76 16 30 H 0.26 14.02 8.31 -92.71 -0.77 13.24 16 31 H 0.11 6.10 5.98 -2.91 -0.02 6.08 16 32 H 0.12 4.33 8.06 -2.91 -0.02 4.30 16 33 H 0.14 3.75 8.06 -2.91 -0.02 3.73 16 34 H 0.15 3.69 8.06 -2.91 -0.02 3.67 16 35 H 0.13 4.36 8.06 -2.91 -0.02 4.34 16 Total: -1.00 -64.98 310.04 6.93 -58.05 By element: Atomic # 1 Polarization: 17.89 SS G_CDS: 1.11 Total: 19.00 kcal Atomic # 6 Polarization: -39.65 SS G_CDS: 3.87 Total: -35.77 kcal Atomic # 7 Polarization: -70.00 SS G_CDS: 0.56 Total: -69.44 kcal Atomic # 8 Polarization: -14.95 SS G_CDS: -0.64 Total: -15.59 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 2.03 Total: 43.76 kcal Total: -64.98 6.93 -58.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055021578.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.901 kcal (2) G-P(sol) polarization free energy of solvation -64.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds