Wall clock time and date at job start Wed Apr 15 2020 11:44:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 C 1.81402 * 103.00069 * 2 1 4 4 C 1.53004 * 115.54899 * 298.70592 * 3 2 1 5 5 N 1.46499 * 109.46925 * 269.85712 * 4 3 2 6 6 C 1.39671 * 120.00000 * 175.68868 * 5 4 3 7 7 C 1.39011 * 120.03520 * 0.02562 * 6 5 4 8 8 C 1.38151 * 120.05691 * 180.02562 * 7 6 5 9 9 C 1.38169 * 120.14645 * 0.23511 * 8 7 6 10 10 C 1.38922 * 120.07878 * 359.48929 * 9 8 7 11 11 O 1.35740 * 120.03275 * 180.25650 * 10 9 8 12 12 C 1.34835 * 117.00257 * 186.43713 * 11 10 9 13 13 H 1.08006 * 119.99699 * 5.39527 * 12 11 10 14 14 C 1.38648 * 120.00597 * 185.39330 * 12 11 10 15 15 N 1.31567 * 119.99666 * 0.02562 * 14 12 11 16 16 Si 1.86793 * 120.00258 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47249 * 60.00665 * 16 14 12 18 18 H 1.48497 * 109.47161 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47130 * 300.00146 * 16 14 12 20 20 C 1.38744 * 120.04306 * 180.02562 * 6 5 4 21 21 C 1.53006 * 117.51646 * 84.40505 * 3 2 1 22 22 C 1.53004 * 117.50014 * 153.03770 * 3 2 1 23 23 H 1.08997 * 109.47218 * 177.31575 * 1 2 3 24 24 H 1.09000 * 109.47128 * 297.31827 * 1 2 3 25 25 H 1.09002 * 109.46861 * 57.32044 * 1 2 3 26 26 H 1.09001 * 109.46954 * 149.86306 * 4 3 2 27 27 H 1.08998 * 109.47279 * 29.86190 * 4 3 2 28 28 H 0.96996 * 120.00398 * 355.68854 * 5 4 3 29 29 H 1.07994 * 119.97155 * 0.02562 * 7 6 5 30 30 H 1.08006 * 119.92788 * 179.97438 * 8 7 6 31 31 H 1.07997 * 119.96267 * 179.72334 * 9 8 7 32 32 H 0.96997 * 119.99714 * 179.97438 * 15 14 12 33 33 H 1.08003 * 120.06974 * 359.95918 * 20 6 5 34 34 H 1.08994 * 117.49739 * 214.96985 * 21 3 2 35 35 H 1.08998 * 117.49529 * 359.97438 * 21 3 2 36 36 H 1.09000 * 117.49779 * 359.97438 * 22 3 2 37 37 H 1.08997 * 117.50151 * 144.97987 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 1.7245 2.5597 -1.2108 5 7 2.7475 2.5428 -2.2593 6 6 2.4847 3.1262 -3.5008 7 6 1.2529 3.7236 -3.7421 8 6 0.9923 4.3003 -4.9701 9 6 1.9525 4.2812 -5.9635 10 6 3.1876 3.6909 -5.7268 11 8 4.1321 3.6772 -6.7016 12 6 5.2560 2.9742 -6.4553 13 1 5.3373 2.3842 -5.5543 14 6 6.3073 3.0087 -7.3585 15 7 6.2085 3.7278 -8.4558 16 14 7.8646 2.0354 -7.0167 17 1 7.5325 0.5922 -6.9080 18 1 8.8295 2.2394 -8.1269 19 1 8.4702 2.5014 -5.7434 20 6 3.4527 3.1103 -4.4946 21 6 2.2522 2.4861 1.3505 22 6 3.5596 2.1838 0.6153 23 1 -0.3633 -1.0265 -0.0481 24 1 -0.3633 0.4716 0.9130 25 1 -0.3633 0.5549 -0.8650 26 1 1.5251 3.5894 -0.9142 27 1 0.8082 2.1068 -1.5897 28 1 3.6073 2.1264 -2.0914 29 1 0.4990 3.7368 -2.9690 30 1 0.0344 4.7635 -5.1555 31 1 1.7440 4.7290 -6.9239 32 1 6.9442 3.7523 -9.0875 33 1 4.4108 2.6474 -4.3095 34 1 1.9176 3.5230 1.3764 35 1 2.0263 1.8968 2.2392 36 1 4.1942 1.3956 1.0206 37 1 4.0852 3.0217 0.1575 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000289373619.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:53 Heat of formation + Delta-G solvation = 28.796746 kcal Electronic energy + Delta-G solvation = -18825.569760 eV Core-core repulsion = 15888.808437 eV Total energy + Delta-G solvation = -2936.761323 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.103 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.14422 -38.16639 -36.57727 -34.02735 -32.13972 -29.74449 -29.08459 -28.36148 -26.07687 -25.19656 -22.82329 -21.89112 -21.28743 -20.28775 -17.86727 -17.49398 -16.73754 -15.85771 -15.28718 -15.04334 -14.78444 -14.40738 -14.16765 -13.91287 -13.61119 -13.52273 -13.30643 -13.18074 -12.81356 -12.34265 -12.19661 -11.82106 -11.59941 -11.44058 -11.24121 -10.94485 -10.78716 -10.65580 -10.50624 -10.37287 -9.99764 -9.41305 -9.32798 -8.72361 -7.85270 -7.31836 -6.74705 -6.37827 -3.96934 1.44282 2.26399 2.41282 2.59915 3.17188 3.18585 3.20483 3.20948 3.91302 4.03027 4.28508 4.42186 4.62387 4.73579 4.91746 4.93267 5.19651 5.25956 5.29313 5.38432 5.41449 5.53315 5.55470 5.64389 5.72618 5.78199 6.00424 6.30492 6.40010 6.65683 6.68372 7.06650 7.18643 7.41194 7.51672 7.70177 8.04351 8.08447 8.23522 9.08353 9.81008 10.80529 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.018190 B = 0.004220 C = 0.003704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.908811 B = 6633.733033 C = 7557.400180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 S -0.198 6.198 3 C -0.132 4.132 4 C 0.176 3.824 5 N -0.747 5.747 6 C 0.250 3.750 7 C -0.281 4.281 8 C -0.040 4.040 9 C -0.237 4.237 10 C 0.190 3.810 11 O -0.178 6.178 12 C -0.388 4.388 13 H 0.090 0.910 14 C 0.039 3.961 15 N -0.865 5.865 16 Si 0.939 3.061 17 H -0.270 1.270 18 H -0.278 1.278 19 H -0.271 1.271 20 C -0.300 4.300 21 C -0.148 4.148 22 C -0.132 4.132 23 H 0.100 0.900 24 H 0.076 0.924 25 H 0.079 0.921 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.396 0.604 29 H 0.100 0.900 30 H 0.109 0.891 31 H 0.113 0.887 32 H 0.269 0.731 33 H 0.124 0.876 34 H 0.103 0.897 35 H 0.106 0.894 36 H 0.105 0.895 37 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.932 -3.914 18.551 20.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.296 4.296 2 S 0.031 5.969 3 C -0.243 4.243 4 C 0.049 3.951 5 N -0.379 5.379 6 C 0.149 3.851 7 C -0.304 4.304 8 C -0.059 4.059 9 C -0.257 4.257 10 C 0.135 3.865 11 O -0.081 6.081 12 C -0.465 4.465 13 H 0.107 0.893 14 C -0.165 4.165 15 N -0.500 5.500 16 Si 0.764 3.236 17 H -0.195 1.195 18 H -0.203 1.203 19 H -0.196 1.196 20 C -0.324 4.324 21 C -0.188 4.188 22 C -0.171 4.171 23 H 0.119 0.881 24 H 0.095 0.905 25 H 0.098 0.902 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.231 0.769 29 H 0.118 0.882 30 H 0.127 0.873 31 H 0.131 0.869 32 H 0.079 0.921 33 H 0.142 0.858 34 H 0.121 0.879 35 H 0.124 0.876 36 H 0.123 0.877 37 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -8.280 -4.659 18.199 20.529 hybrid contribution 0.234 0.303 0.255 0.461 sum -8.045 -4.355 18.454 20.597 Atomic orbital electron populations 1.23434 0.94708 1.06342 1.05143 1.86573 1.06960 1.05927 1.97418 1.23784 1.07589 0.95184 0.97694 1.20745 0.91578 0.97659 0.85168 1.44441 1.17051 1.65306 1.11128 1.17445 0.93088 0.90406 0.84140 1.20035 0.97113 1.14051 0.99231 1.20359 0.97131 0.96157 0.92238 1.20031 0.93191 1.11743 1.00758 1.19079 0.89297 0.90910 0.87215 1.83997 1.24983 1.63081 1.36058 1.21248 0.91612 1.25226 1.08395 0.89273 1.25261 0.98606 0.97498 0.95150 1.70036 1.32492 1.38011 1.09503 0.85815 0.80052 0.79530 0.78226 1.19545 1.20326 1.19621 1.20496 1.01169 1.16182 0.94544 1.23342 1.01031 1.01234 0.93233 1.22962 0.89556 1.03191 1.01345 0.88127 0.90511 0.90159 0.92239 0.92166 0.76901 0.88158 0.87270 0.86933 0.92087 0.85816 0.87903 0.87609 0.87687 0.87157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.07 10.56 101.05 1.07 0.00 16 2 S -0.20 -2.18 22.27 -107.50 -2.39 -4.57 16 3 C -0.13 -1.35 2.14 -90.61 -0.19 -1.55 16 4 C 0.18 2.14 4.97 -4.04 -0.02 2.12 16 5 N -0.75 -11.43 5.63 -58.65 -0.33 -11.76 16 6 C 0.25 4.78 6.65 -83.81 -0.56 4.22 16 7 C -0.28 -5.09 9.29 -39.33 -0.37 -5.46 16 8 C -0.04 -0.75 10.03 -39.64 -0.40 -1.14 16 9 C -0.24 -5.24 9.99 -39.35 -0.39 -5.63 16 10 C 0.19 4.76 6.64 -39.13 -0.26 4.50 16 11 O -0.18 -5.23 9.76 0.07 0.00 -5.23 16 12 C -0.39 -11.12 9.44 30.88 0.29 -10.83 16 13 H 0.09 2.38 5.30 -52.48 -0.28 2.10 16 14 C 0.04 1.08 5.49 -17.51 -0.10 0.99 16 15 N -0.87 -25.84 13.67 55.48 0.76 -25.08 16 16 Si 0.94 20.95 29.55 -169.99 -5.02 15.93 16 17 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 18 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 19 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 20 C -0.30 -6.77 8.97 -39.20 -0.35 -7.12 16 21 C -0.15 -1.18 9.94 -26.72 -0.27 -1.45 16 22 C -0.13 -1.21 9.44 -26.72 -0.25 -1.46 16 23 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 24 H 0.08 0.53 8.14 -51.92 -0.42 0.11 16 25 H 0.08 0.70 7.02 -51.92 -0.36 0.33 16 26 H 0.06 0.70 7.84 -51.93 -0.41 0.29 16 27 H 0.06 0.76 6.32 -51.93 -0.33 0.43 16 28 H 0.40 5.91 8.08 -40.82 -0.33 5.58 16 29 H 0.10 1.56 6.72 -52.49 -0.35 1.21 16 30 H 0.11 1.68 8.06 -52.48 -0.42 1.26 16 31 H 0.11 2.41 8.06 -52.49 -0.42 1.99 16 32 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 33 H 0.12 2.82 5.72 -52.48 -0.30 2.52 16 34 H 0.10 0.74 8.03 -51.93 -0.42 0.32 16 35 H 0.11 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.11 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 325.92 15.07 4.91 4.91 Total: -1.00 -31.48 325.92 -8.74 -40.22 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: -4.87 Total: 8.40 kcal Atomic # 6 Polarization: -21.02 SS G_CDS: -1.79 Total: -22.81 kcal Atomic # 7 Polarization: -37.27 SS G_CDS: 0.43 Total: -36.85 kcal Atomic # 8 Polarization: -5.23 SS G_CDS: 0.00 Total: -5.23 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Atomic # 16 Polarization: -2.18 SS G_CDS: -2.39 Total: -4.57 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -31.48 -8.74 -40.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289373619.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.017 kcal (2) G-P(sol) polarization free energy of solvation -31.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds