Wall clock time and date at job start Wed Apr 15 2020 11:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 C 1.81402 * 103.00069 * 2 1 4 4 C 1.53004 * 115.54899 * 298.70592 * 3 2 1 5 5 N 1.46499 * 109.46925 * 269.85712 * 4 3 2 6 6 C 1.39671 * 120.00000 * 175.68868 * 5 4 3 7 7 C 1.39011 * 120.03520 * 0.02562 * 6 5 4 8 8 C 1.38151 * 120.05691 * 180.02562 * 7 6 5 9 9 C 1.38169 * 120.14645 * 0.23511 * 8 7 6 10 10 C 1.38922 * 120.07878 * 359.48929 * 9 8 7 11 11 O 1.35740 * 120.03275 * 180.25650 * 10 9 8 12 12 C 1.34835 * 117.00257 * 186.43713 * 11 10 9 13 13 H 1.08006 * 119.99699 * 5.39527 * 12 11 10 14 14 C 1.38648 * 120.00597 * 185.39330 * 12 11 10 15 15 N 1.31567 * 119.99666 * 0.02562 * 14 12 11 16 16 Si 1.86793 * 120.00258 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47249 * 60.00665 * 16 14 12 18 18 H 1.48497 * 109.47161 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47130 * 300.00146 * 16 14 12 20 20 C 1.38744 * 120.04306 * 180.02562 * 6 5 4 21 21 C 1.53006 * 117.51646 * 84.40505 * 3 2 1 22 22 C 1.53004 * 117.50014 * 153.03770 * 3 2 1 23 23 H 1.08997 * 109.47218 * 177.31575 * 1 2 3 24 24 H 1.09000 * 109.47128 * 297.31827 * 1 2 3 25 25 H 1.09002 * 109.46861 * 57.32044 * 1 2 3 26 26 H 1.09001 * 109.46954 * 149.86306 * 4 3 2 27 27 H 1.08998 * 109.47279 * 29.86190 * 4 3 2 28 28 H 0.96996 * 120.00398 * 355.68854 * 5 4 3 29 29 H 1.07994 * 119.97155 * 0.02562 * 7 6 5 30 30 H 1.08006 * 119.92788 * 179.97438 * 8 7 6 31 31 H 1.07997 * 119.96267 * 179.72334 * 9 8 7 32 32 H 0.96997 * 119.99714 * 179.97438 * 15 14 12 33 33 H 1.08003 * 120.06974 * 359.95918 * 20 6 5 34 34 H 1.08994 * 117.49739 * 214.96985 * 21 3 2 35 35 H 1.08998 * 117.49529 * 359.97438 * 21 3 2 36 36 H 1.09000 * 117.49779 * 359.97438 * 22 3 2 37 37 H 1.08997 * 117.50151 * 144.97987 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 1.7245 2.5597 -1.2108 5 7 2.7475 2.5428 -2.2593 6 6 2.4847 3.1262 -3.5008 7 6 1.2529 3.7236 -3.7421 8 6 0.9923 4.3003 -4.9701 9 6 1.9525 4.2812 -5.9635 10 6 3.1876 3.6909 -5.7268 11 8 4.1321 3.6772 -6.7016 12 6 5.2560 2.9742 -6.4553 13 1 5.3373 2.3842 -5.5543 14 6 6.3073 3.0087 -7.3585 15 7 6.2085 3.7278 -8.4558 16 14 7.8646 2.0354 -7.0167 17 1 7.5325 0.5922 -6.9080 18 1 8.8295 2.2394 -8.1269 19 1 8.4702 2.5014 -5.7434 20 6 3.4527 3.1103 -4.4946 21 6 2.2522 2.4861 1.3505 22 6 3.5596 2.1838 0.6153 23 1 -0.3633 -1.0265 -0.0481 24 1 -0.3633 0.4716 0.9130 25 1 -0.3633 0.5549 -0.8650 26 1 1.5251 3.5894 -0.9142 27 1 0.8082 2.1068 -1.5897 28 1 3.6073 2.1264 -2.0914 29 1 0.4990 3.7368 -2.9690 30 1 0.0344 4.7635 -5.1555 31 1 1.7440 4.7290 -6.9239 32 1 6.9442 3.7523 -9.0875 33 1 4.4108 2.6474 -4.3095 34 1 1.9176 3.5230 1.3764 35 1 2.0263 1.8968 2.2392 36 1 4.1942 1.3956 1.0206 37 1 4.0852 3.0217 0.1575 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000289373619.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:52 Heat of formation + Delta-G solvation = 9.805722 kcal Electronic energy + Delta-G solvation = -18826.393273 eV Core-core repulsion = 15888.808437 eV Total energy + Delta-G solvation = -2937.584836 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.103 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.79360 -39.33606 -38.09195 -35.41508 -34.17087 -31.16703 -30.09740 -29.73057 -27.42756 -27.06089 -23.63265 -23.35043 -22.55746 -21.63610 -19.74687 -19.05012 -17.86964 -17.07646 -16.74602 -16.31785 -16.08494 -15.85949 -15.72058 -15.46954 -14.99540 -14.54593 -14.41443 -14.17567 -14.15019 -13.91589 -13.48785 -13.06746 -12.99738 -12.61858 -12.49403 -12.46477 -12.23425 -12.08348 -11.93657 -11.41413 -11.32353 -10.97984 -10.74686 -10.57250 -9.10545 -8.68046 -8.45167 -8.24313 -6.13511 0.69624 0.76529 0.91839 1.34022 1.45598 1.50362 1.54110 2.18740 2.31183 2.86026 2.89485 3.27335 3.49658 3.58316 3.60731 3.90545 4.20949 4.28170 4.34774 4.40194 4.49175 4.58009 4.61570 4.63942 4.67941 4.74946 4.90305 4.92596 5.04946 5.12236 5.14558 5.15553 5.44971 5.75423 5.80036 6.03105 6.11353 6.58164 6.81287 7.00053 7.83219 8.78245 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.018190 B = 0.004220 C = 0.003704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.908811 B = 6633.733033 C = 7557.400180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 S -0.248 6.248 3 C -0.137 4.137 4 C 0.173 3.827 5 N -0.738 5.738 6 C 0.257 3.743 7 C -0.265 4.265 8 C -0.025 4.025 9 C -0.261 4.261 10 C 0.153 3.847 11 O -0.232 6.232 12 C -0.411 4.411 13 H 0.097 0.903 14 C -0.022 4.022 15 N -0.921 5.921 16 Si 1.017 2.983 17 H -0.259 1.259 18 H -0.270 1.270 19 H -0.258 1.258 20 C -0.316 4.316 21 C -0.123 4.123 22 C -0.138 4.138 23 H 0.109 0.891 24 H 0.093 0.907 25 H 0.078 0.922 26 H 0.075 0.925 27 H 0.063 0.937 28 H 0.397 0.603 29 H 0.140 0.860 30 H 0.153 0.847 31 H 0.107 0.893 32 H 0.272 0.728 33 H 0.111 0.889 34 H 0.118 0.882 35 H 0.117 0.883 36 H 0.105 0.895 37 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.555 -4.310 21.800 24.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.285 4.285 2 S -0.018 6.018 3 C -0.247 4.247 4 C 0.047 3.953 5 N -0.368 5.368 6 C 0.153 3.847 7 C -0.287 4.287 8 C -0.044 4.044 9 C -0.282 4.282 10 C 0.101 3.899 11 O -0.138 6.138 12 C -0.487 4.487 13 H 0.114 0.886 14 C -0.219 4.219 15 N -0.560 5.560 16 Si 0.836 3.164 17 H -0.184 1.184 18 H -0.194 1.194 19 H -0.182 1.182 20 C -0.340 4.340 21 C -0.163 4.163 22 C -0.177 4.177 23 H 0.128 0.872 24 H 0.112 0.888 25 H 0.096 0.904 26 H 0.093 0.907 27 H 0.081 0.919 28 H 0.232 0.768 29 H 0.158 0.842 30 H 0.171 0.829 31 H 0.125 0.875 32 H 0.081 0.919 33 H 0.129 0.871 34 H 0.136 0.864 35 H 0.136 0.864 36 H 0.124 0.876 37 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -9.950 -5.068 21.527 24.250 hybrid contribution 0.444 0.438 -0.507 0.804 sum -9.505 -4.630 21.020 23.529 Atomic orbital electron populations 1.23469 0.91982 1.07171 1.05895 1.86775 1.10094 1.07431 1.97543 1.23649 1.08656 0.94234 0.98174 1.20950 0.90614 0.98901 0.84828 1.44607 1.17969 1.63789 1.10450 1.17530 0.92661 0.89822 0.84687 1.20520 0.97029 1.11456 0.99734 1.20824 0.97694 0.94648 0.91189 1.20268 0.93260 1.12731 1.01980 1.19652 0.89727 0.92640 0.87839 1.83951 1.26227 1.65151 1.38485 1.21716 0.92086 1.25903 1.08991 0.88601 1.26555 1.02170 0.98608 0.94615 1.70184 1.34019 1.40699 1.11078 0.84683 0.75043 0.78040 0.78661 1.18381 1.19412 1.18194 1.20497 1.01797 1.16714 0.94967 1.23445 0.99007 1.01780 0.92110 1.23002 0.89798 1.03147 1.01735 0.87246 0.88800 0.90351 0.90713 0.91901 0.76795 0.84187 0.82940 0.87501 0.91863 0.87143 0.86431 0.86442 0.87621 0.87546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.60 10.56 113.37 1.20 -0.40 16 2 S -0.25 -4.94 22.27 -56.49 -1.26 -6.19 16 3 C -0.14 -2.40 2.14 -10.79 -0.02 -2.42 16 4 C 0.17 3.58 4.97 86.38 0.43 4.01 16 5 N -0.74 -20.94 5.63 -339.47 -1.91 -22.85 16 6 C 0.26 9.37 6.65 38.20 0.25 9.62 16 7 C -0.26 -8.60 9.29 22.43 0.21 -8.39 16 8 C -0.03 -0.87 10.03 22.23 0.22 -0.64 16 9 C -0.26 -11.73 9.99 22.42 0.22 -11.50 16 10 C 0.15 8.00 6.64 22.56 0.15 8.15 16 11 O -0.23 -14.54 9.76 -22.68 -0.22 -14.76 16 12 C -0.41 -24.83 9.44 67.92 0.64 -24.18 16 13 H 0.10 5.39 5.30 -2.91 -0.02 5.37 16 14 C -0.02 -1.30 5.49 84.83 0.47 -0.83 16 15 N -0.92 -57.94 13.67 21.61 0.30 -57.64 16 16 Si 1.02 44.14 29.55 68.60 2.03 46.17 16 17 H -0.26 -10.66 7.11 99.48 0.71 -9.96 16 18 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 19 H -0.26 -10.48 7.11 99.48 0.71 -9.78 16 20 C -0.32 -14.55 8.97 22.52 0.20 -14.35 16 21 C -0.12 -1.51 9.94 30.60 0.30 -1.20 16 22 C -0.14 -2.20 9.44 30.60 0.29 -1.91 16 23 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 24 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 25 H 0.08 1.11 7.02 -2.39 -0.02 1.09 16 26 H 0.07 1.39 7.84 -2.39 -0.02 1.37 16 27 H 0.06 1.32 6.32 -2.39 -0.02 1.30 16 28 H 0.40 11.33 8.08 -92.71 -0.75 10.58 16 29 H 0.14 3.51 6.72 -2.91 -0.02 3.49 16 30 H 0.15 3.97 8.06 -2.91 -0.02 3.94 16 31 H 0.11 4.77 8.06 -2.91 -0.02 4.75 16 32 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 33 H 0.11 5.26 5.72 -2.91 -0.02 5.25 16 34 H 0.12 1.14 8.03 -2.39 -0.02 1.12 16 35 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -73.35 325.92 3.83 -69.52 By element: Atomic # 1 Polarization: 29.49 SS G_CDS: 0.34 Total: 29.83 kcal Atomic # 6 Polarization: -48.63 SS G_CDS: 4.56 Total: -44.07 kcal Atomic # 7 Polarization: -78.88 SS G_CDS: -1.61 Total: -80.49 kcal Atomic # 8 Polarization: -14.54 SS G_CDS: -0.22 Total: -14.76 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Atomic # 16 Polarization: -4.94 SS G_CDS: -1.26 Total: -6.19 kcal Total: -73.35 3.83 -69.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289373619.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.323 kcal (2) G-P(sol) polarization free energy of solvation -73.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds