Wall clock time and date at job start Wed Apr 15 2020 11:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31422 * 1 3 3 Si 1.86795 * 120.00299 * 2 1 4 4 H 1.48503 * 109.47078 * 269.99868 * 3 2 1 5 5 H 1.48505 * 109.47296 * 29.99442 * 3 2 1 6 6 H 1.48497 * 109.47304 * 149.99866 * 3 2 1 7 7 C 1.38891 * 119.99904 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00024 * 325.38470 * 7 2 1 9 9 N 1.37140 * 119.99687 * 145.37366 * 7 2 1 10 10 C 1.34777 * 120.00184 * 241.40701 * 9 7 2 11 11 O 1.21275 * 120.00132 * 0.03909 * 10 9 7 12 12 C 1.50700 * 119.99905 * 180.02562 * 10 9 7 13 13 F 1.39904 * 110.98851 * 43.43462 * 12 10 9 14 14 C 1.55303 * 111.12796 * 279.23402 * 12 10 9 15 15 C 1.54375 * 102.25694 * 207.90603 * 14 12 10 16 16 O 1.43241 * 107.58745 * 21.35713 * 15 14 12 17 17 C 1.43651 * 109.97118 * 1.71214 * 16 15 14 18 18 C 1.39791 * 119.99694 * 61.41789 * 9 7 2 19 19 C 1.38956 * 120.08214 * 90.97487 * 18 9 7 20 20 C 1.38080 * 119.92121 * 179.74419 * 19 18 9 21 21 C 1.38308 * 120.08008 * 0.55214 * 20 19 18 22 22 C 1.38310 * 120.15257 * 359.70077 * 21 20 19 23 23 C 1.38082 * 120.07974 * 0.02562 * 22 21 20 24 24 H 0.96998 * 119.99472 * 4.61428 * 1 2 3 25 25 H 1.09011 * 110.84285 * 89.71534 * 14 12 10 26 26 H 1.08998 * 111.02381 * 326.17981 * 14 12 10 27 27 H 1.08999 * 109.83085 * 261.85009 * 15 14 12 28 28 H 1.08998 * 109.83240 * 140.86868 * 15 14 12 29 29 H 1.08998 * 110.30478 * 94.48664 * 17 16 15 30 30 H 1.08995 * 110.30697 * 216.65504 * 17 16 15 31 31 H 1.08002 * 120.03679 * 359.97438 * 19 18 9 32 32 H 1.08001 * 119.96009 * 180.25129 * 20 19 18 33 33 H 1.08001 * 119.92394 * 179.72081 * 21 20 19 34 34 H 1.07997 * 119.95905 * 179.97438 * 22 21 20 35 35 H 1.08000 * 120.04290 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2483 1.6176 0.0000 4 1 2.4958 2.0463 -1.4001 5 1 1.4457 2.6527 0.6999 6 1 3.5458 1.4401 0.7000 7 6 2.0087 -1.2028 0.0005 8 1 1.6120 -2.0551 0.5322 9 7 3.1979 -1.3083 -0.6743 10 6 3.3208 -2.1854 -1.6902 11 8 2.3796 -2.8810 -2.0080 12 6 4.6278 -2.3016 -2.4313 13 9 5.7091 -2.3011 -1.5435 14 6 4.7727 -1.1752 -3.4906 15 6 5.6850 -1.8344 -4.5472 16 8 5.5817 -3.2536 -4.3833 17 6 4.6482 -3.5599 -3.3353 18 6 4.2826 -0.5061 -0.3083 19 6 5.1985 -0.9602 0.6329 20 6 6.2717 -0.1673 0.9881 21 6 6.4294 1.0823 0.4166 22 6 5.5169 1.5397 -0.5166 23 6 4.4444 0.7498 -0.8807 24 1 -0.4849 0.8373 -0.0676 25 1 5.2514 -0.2961 -3.0589 26 1 3.8053 -0.9161 -3.9207 27 1 6.7169 -1.5186 -4.3936 28 1 5.3558 -1.5528 -5.5474 29 1 3.6578 -3.7422 -3.7524 30 1 4.9866 -4.4274 -2.7688 31 1 5.0730 -1.9338 1.0833 32 1 6.9861 -0.5213 1.7165 33 1 7.2673 1.7023 0.6996 34 1 5.6428 2.5161 -0.9605 35 1 3.7324 1.1074 -1.6099 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001342900082.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:41 Heat of formation + Delta-G solvation = -48.566968 kcal Electronic energy + Delta-G solvation = -23219.834252 eV Core-core repulsion = 19713.505011 eV Total energy + Delta-G solvation = -3506.329242 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.106 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -47.49589 -39.86834 -38.84307 -37.66220 -34.84817 -32.43382 -31.61268 -30.72981 -29.13201 -29.06764 -25.68643 -22.99093 -22.43145 -22.11489 -21.84223 -19.30661 -18.13764 -17.37478 -16.64831 -16.26243 -15.55847 -15.35512 -15.11294 -14.96882 -14.74245 -14.29060 -13.75585 -13.56954 -13.45607 -13.22614 -12.88575 -12.84318 -12.75853 -12.31246 -11.77002 -11.57443 -11.46789 -11.39059 -11.05953 -10.94067 -10.63048 -10.31665 -9.89363 -9.49527 -9.00413 -8.79506 -8.21826 -7.90265 -7.78598 -6.55121 -4.33332 1.71643 1.79836 2.93658 3.17259 3.23518 3.26647 3.73765 3.96745 4.07171 4.19008 4.38338 4.67212 4.73326 4.81960 4.95294 5.19174 5.28759 5.30418 5.32874 5.47513 5.68380 5.79281 5.81794 5.91287 5.95181 5.97441 6.15493 6.28304 6.41113 6.74396 6.87221 6.95135 7.02459 7.29964 7.54137 8.19739 8.27659 8.71866 9.07343 9.51255 10.44604 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.016983 B = 0.009989 C = 0.007689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.327023 B = 2802.283087 C = 3640.512217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.090 3.910 3 Si 0.850 3.150 4 H -0.278 1.278 5 H -0.293 1.293 6 H -0.219 1.219 7 C -0.354 4.354 8 H 0.098 0.902 9 N -0.420 5.420 10 C 0.483 3.517 11 O -0.525 6.525 12 C 0.069 3.931 13 F -0.181 7.181 14 C -0.170 4.170 15 C 0.055 3.945 16 O -0.380 6.380 17 C 0.050 3.950 18 C 0.137 3.863 19 C -0.092 4.092 20 C -0.118 4.118 21 C -0.127 4.127 22 C -0.123 4.123 23 C -0.152 4.152 24 H 0.277 0.723 25 H 0.100 0.900 26 H 0.098 0.902 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.121 0.879 32 H 0.118 0.882 33 H 0.116 0.884 34 H 0.117 0.883 35 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.556 2.442 -3.579 13.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.124 4.124 3 Si 0.680 3.320 4 H -0.205 1.205 5 H -0.221 1.221 6 H -0.143 1.143 7 C -0.478 4.478 8 H 0.115 0.885 9 N -0.140 5.140 10 C 0.269 3.731 11 O -0.402 6.402 12 C 0.046 3.954 13 F -0.162 7.162 14 C -0.208 4.208 15 C -0.021 4.021 16 O -0.299 6.299 17 C -0.027 4.027 18 C 0.048 3.952 19 C -0.112 4.112 20 C -0.137 4.137 21 C -0.146 4.146 22 C -0.142 4.142 23 C -0.171 4.171 24 H 0.087 0.913 25 H 0.119 0.881 26 H 0.117 0.883 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.115 0.885 30 H 0.116 0.884 31 H 0.139 0.861 32 H 0.136 0.864 33 H 0.134 0.866 34 H 0.135 0.865 35 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 11.948 2.002 -3.742 12.679 hybrid contribution 0.223 1.317 0.394 1.392 sum 12.171 3.319 -3.348 13.052 Atomic orbital electron populations 1.69978 1.07056 1.28690 1.39635 1.25414 0.94398 0.99557 0.92990 0.87760 0.81990 0.83347 0.78937 1.20540 1.22145 1.14258 1.18525 0.94022 1.00060 1.35170 0.88466 1.41020 1.09435 1.35080 1.28446 1.20230 0.87773 0.84458 0.80660 1.90622 1.39836 1.44440 1.65320 1.22800 0.84503 0.98373 0.89682 1.92906 1.56312 1.97340 1.69601 1.23723 1.02701 0.98780 0.95580 1.23125 0.99592 0.80900 0.98514 1.88385 1.63943 1.22122 1.55486 1.23821 0.95407 0.95867 0.87601 1.18145 0.89065 0.92216 0.95814 1.21298 0.93725 0.99749 0.96406 1.20936 0.97933 0.94566 1.00271 1.20977 0.99347 0.96357 0.97875 1.20817 0.95279 0.99254 0.98854 1.21616 0.99040 0.94871 1.01597 0.91270 0.88136 0.88322 0.90846 0.90813 0.88489 0.88381 0.86098 0.86368 0.86609 0.86498 0.84842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -23.54 13.95 55.49 0.77 -22.77 16 2 C 0.09 2.45 5.49 -17.49 -0.10 2.35 16 3 Si 0.85 19.52 23.36 -169.99 -3.97 15.55 16 4 H -0.28 -6.09 5.88 56.52 0.33 -5.76 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.22 -4.76 4.42 56.52 0.25 -4.51 16 7 C -0.35 -9.83 9.06 -14.94 -0.14 -9.96 16 8 H 0.10 2.97 8.06 -52.49 -0.42 2.54 16 9 N -0.42 -10.17 2.46 -58.98 -0.15 -10.31 16 10 C 0.48 11.27 6.77 -10.99 -0.07 11.20 16 11 O -0.52 -13.88 15.66 5.56 0.09 -13.79 16 12 C 0.07 1.29 1.05 -89.52 -0.09 1.19 16 13 F -0.18 -3.39 13.79 2.25 0.03 -3.35 16 14 C -0.17 -2.69 5.88 -24.79 -0.15 -2.83 16 15 C 0.06 0.76 7.79 37.88 0.30 1.05 16 16 O -0.38 -6.15 11.36 -35.23 -0.40 -6.55 16 17 C 0.05 0.85 6.85 38.19 0.26 1.12 16 18 C 0.14 2.88 1.95 -83.69 -0.16 2.71 16 19 C -0.09 -1.74 8.09 -39.37 -0.32 -2.06 16 20 C -0.12 -1.86 10.04 -39.61 -0.40 -2.26 16 21 C -0.13 -1.89 10.04 -39.53 -0.40 -2.29 16 22 C -0.12 -2.00 9.05 -39.61 -0.36 -2.36 16 23 C -0.15 -2.94 3.68 -39.37 -0.14 -3.09 16 24 H 0.28 7.28 8.31 -40.82 -0.34 6.94 16 25 H 0.10 1.52 6.67 -51.92 -0.35 1.18 16 26 H 0.10 1.57 8.03 -51.93 -0.42 1.16 16 27 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.10 1.70 7.23 -51.93 -0.38 1.33 16 30 H 0.10 1.55 8.14 -51.93 -0.42 1.13 16 31 H 0.12 2.24 8.06 -52.49 -0.42 1.82 16 32 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 33 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 34 H 0.12 1.57 8.06 -52.49 -0.42 1.14 16 35 H 0.13 2.70 4.87 -52.49 -0.26 2.44 16 LS Contribution 283.56 15.07 4.27 4.27 Total: -1.00 -31.06 283.56 -5.25 -36.31 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -4.13 Total: 5.86 kcal Atomic # 6 Polarization: -3.46 SS G_CDS: -1.77 Total: -5.22 kcal Atomic # 7 Polarization: -33.71 SS G_CDS: 0.63 Total: -33.08 kcal Atomic # 8 Polarization: -20.03 SS G_CDS: -0.31 Total: -20.34 kcal Atomic # 9 Polarization: -3.39 SS G_CDS: 0.03 Total: -3.35 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -3.97 Total: 15.55 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -31.06 -5.25 -36.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342900082.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.259 kcal (2) G-P(sol) polarization free energy of solvation -31.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds